RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
W

Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
DNM1	1	-0.280	0.150		1.049	-1.435	1.593	1.013
AP3B1	1			0.283			0.568	0.447
AP2B1	0	0.890	-0.970
AP2B1	0	0.890	-0.970	-0.267	0.203	0.287	0.311	0.233
NCAPD2	0	-0.870	0.320	-0.142			-0.071	-0.184
AP2S1	0	-0.210	0.500	-0.049	0.539	0.830	0.375
AP3D1	0	-0.770	1.000
AP3D1	0	-0.770	1.000	-3.722			0.111	0.159
AP1B1	0	-0.890	1.670
AP1B1	0	-0.890	1.670	-0.267	0.203	0.287	0.311	0.233
AP1B1	0	-0.890	1.670				-1.575	-0.671
AP1B1	0	-0.890	1.670	0.931	0.543	0.034	0.611	0.276
COPZ1	0				0.462	-0.105	-0.741
COPA	0			0.225	0.454	0.171	0.017	-0.104
COPB1	0			1.105	-0.061	-0.030	-0.190	-0.163
CLTC	0	0.350	-0.220	-0.538	-0.243	-0.478	0.375	0.284
AP3S2	0	-0.930	0.720
COPG2	0			-1.032	0.310	-0.500	-0.204	0.149
SYNJ1	0	0.310	-0.210
AP1G1	0	-0.070	-0.460	-0.071			0.366	0.385
AP3S1	0	1.210	-1.210	-1.064			-0.141
COPG1	0			-1.084	0.565	0.191	-0.761	-0.214
AP1S2	0	1.190	-0.690	-1.049
AP2A2	0	-1.330	2.130	1.006	0.165	0.468	0.244	0.392
COPB2	0			0.442	0.456	0.355	-0.100	-0.317
AP2A1	0	0.510	-1.060	0.414	0.086	0.168	-0.002	0.179
AP1G2	0	0.560	-0.680				0.454	1.062
C15orf38-A	0

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
AP1B1	Ubiquitylation	K5	0.232	0.554	_(ac)TDSK(gl)YFTTTK_
AP1B1	Ubiquitylation	K12	0.255		_K(gl)GEIFELK_
AP1B1	Ubiquitylation	K117	-0.547		_VDK(gl)ITEYLCEPLRK_
AP1B1	Ubiquitylation	K131	0.324	-0.027	_CLK(gl)DEDPYVRK_
AP1B1	Ubiquitylation	K860		-2.206	_LQSSNIFTVAK(gl)R_
AP1B1	Ubiquitylation	K899	-0.222	-0.751	_IQPGNPSCTLSLK(gl)CR_
AP1G1	Ubiquitylation	K385	1.119	0.748	_DLDVSIK(gl)R_
AP1G1	Ubiquitylation	K595	-0.570	-0.014	_AVEYNALFKK(gl)_
AP1G2	Ubiquitylation	K30		-0.209	_EVIQK(gl)ECAHIR_
AP2A1	Phosphorylation	S655		-1.574	_DPSSNDINGGM(ox)EPTPSTVSTPS(ph)PSADLLGLR_
AP2A1	Ubiquitylation	K880	-0.136		_WK(gl)QLSLPQQEAQK_
AP2A2	Ubiquitylation	K6	-0.477	0.972	_PAVSK(gl)GDGMR_
AP2A2	Ubiquitylation	K616	-0.123		_ESSILAKLK(gl)_
AP2A2	Ubiquitylation	K631	-0.267	-0.317	_KGPSTVTDLEDTK(gl)R_
AP2B1	Ubiquitylation	K5	0.145	0.310	_(ac)TDSK(gl)YFTTNK_
AP2B1	Ubiquitylation	K12	0.255		_K(gl)GEIFELK_
AP2B1	Ubiquitylation	K117	-0.547		_VDK(gl)ITEYLCEPLRK_
AP2B1	Ubiquitylation	K131	0.324	-0.027	_CLK(gl)DEDPYVRK_
AP2B1	Ubiquitylation	K733		-0.273	_AVWLPAVK(gl)AK_
AP2B1	Ubiquitylation	K735	-0.839	-0.273	_AVWLPAVKAK(gl)_
AP2S1	Ubiquitylation	K45	-1.058	-0.297	_DAK(gl)HTNFVEFR_
AP2S1	Ubiquitylation	K130	-1.793	0.099	_ETSQTK(gl)VLK_
AP3B1	Ubiquitylation	K74		3.486	_IVGM(ox)IAKGK(gl)_
AP3B1	Phosphorylation	S276	0.667	0.762	_NFYES(ph)DDDQKEK_
AP3D1	Ubiquitylation	K7	0.529	0.464	_MVK(gl)GSIDR_
AP3D1	Phosphorylation	S9		0.952	_MVKGS(ph)IDR_
AP3D1	Ubiquitylation	K379	0.803	0.640	_NLMEIVKK(gl)_
AP3D1	Phosphorylation	T735	0.260	-0.981	_NTET(ph)SKSPEKDVPM(ox)VEK_
AP3D1	Phosphorylation	S736	-0.691	-0.892	_NTETS(ph)KSPEKDVPM(ox)VEK_
AP3D1	Phosphorylation	S738	-0.194	-0.008	_NTETSKS(ph)PEKDVPMVEK_
AP3S1	Ubiquitylation	K18	-0.109	0.558	_LSK(gl)FYQPYSEDTQQQIIR_
AP3S1	Ubiquitylation	K166	-0.248		_AVSAVK(gl)NMNLPEIPR_
AP3S1	Ubiquitylation	K193	-0.977		_VPNLPSFK(gl)_
AP3S2	Ubiquitylation	K350		0.204	_LEK(gl)SEGGLSAAPAR_
AP3S2	Ubiquitylation	K367	-1.289	-0.624	_AVSAVK(gl)NINLPEIPR_
C15orf38-AP3S2	Ubiquitylation	K182		0.119	_LEAGTVTK(gl)CNFTGDGK_
C15orf38-AP3S2	Ubiquitylation	K350		0.204	_LEK(gl)SEGGLSAAPAR_
C15orf38-AP3S2	Ubiquitylation	K367	-1.289	-0.624	_AVSAVK(gl)NINLPEIPR_
CLTC	Ubiquitylation	K83	0.714		_VIALK(gl)AGK_
CLTC	Ubiquitylation	K86		0.631	_VIALKAGK(gl)_
CLTC	Ubiquitylation	K389	-1.051	-0.085	_VAANAPK(gl)GILR_
CLTC	Phosphorylation	T394	-0.123	0.181	_GILRT(ph)PDTIRR_
CLTC	Ubiquitylation	K506		0.267	_IVLYAK(gl)K_
CLTC	Ubiquitylation	K507	0.050	0.267	_IVLYAKK(gl)_
CLTC	Ubiquitylation	K619	-0.177	0.475	_AHIAQLCEK(gl)AGLLQR_
CLTC	Ubiquitylation	K737	-0.435	-0.298	_YIQAACK(gl)TGQIK_
CLTC	Ubiquitylation	K742	0.005	0.082	_TGQIK(gl)EVER_
CLTC	Ubiquitylation	K851		-0.859	_GQFSTDELVAEVEK(gl)R_
CLTC	Ubiquitylation	K911	-1.282		_YCEK(gl)RDPHLACVAYER_
CLTC	Ubiquitylation	K1118	-0.674	-0.765	_AQLQK(gl)GMVK_
CLTC	Ubiquitylation	K1209		-0.791	_CYDEK(gl)MYDAAK_
CLTC	Ubiquitylation	K1443	-2.089	-0.019	_VK(gl)QLPLVKPYLR_
CLTC	Ubiquitylation	K1449		-2.307	_QLPLVK(gl)PYLR_
CLTC	Ubiquitylation	K1516		-0.990	_IAAYLFK(gl)GNNR_
CLTC	Ubiquitylation	K1609	-0.714		_EYLTK(gl)VDKLDASESLR_
COPA	Ubiquitylation	K4	0.360		_MLTK(gl)FETK_
COPA	Ubiquitylation	K46	-0.135		_MCTLIDK(gl)FDEHDGPVR_
COPA	Ubiquitylation	K169	-0.613		_K(gl)KNLSPGAVESDVR_
COPA	Ubiquitylation	K170	-0.613		_K(gl)KNLSPGAVESDVR_
COPA	Phosphorylation	S173	0.372	0.591	_NLS(ph)PGAVESDVR_
COPA	Ubiquitylation	K238	-0.248	0.174	_M(ox)NESK(gl)AWEVDTCR_
COPA	Ubiquitylation	K280		0.440	_VWDMSK(gl)R_
COPA	Ubiquitylation	K350	-0.803	-0.295	_QLDFNSSK(gl)DVAVMQLR_
COPA	Ubiquitylation	K411		-2.140	_DADSQNPDAPEGK(gl)R_
COPA	Ubiquitylation	K441	-1.204	-0.477	_NLK(gl)NEITK_
COPA	Ubiquitylation	K446	-1.464		_NLKNEITK(gl)K_
COPA	Ubiquitylation	K574	-0.649	0.517	_VK(gl)GNNVYCLDR_
COPA	Ubiquitylation	K598		0.427	_VLTIDPTEFK(gl)FK_
COPA	Ubiquitylation	K600	0.188		_VLTIDPTEFKFK(gl)_
COPA	Ubiquitylation	K721	-0.198		_MMK(gl)IAEIR_
COPA	Ubiquitylation	K825	-0.187		_GFFEGTIASK(gl)GK_
COPA	Ubiquitylation	K827	-0.512	0.105	_GFFEGTIASKGK(gl)_
COPA	Ubiquitylation	K988		-0.943	_NWK(gl)DAGLK_
COPA	Ubiquitylation	K993	0.298	-1.064	_DAGLK(gl)NGVPAVGLK_
COPA	Ubiquitylation	K1082		-0.397	_ETLEQQK(gl)R_
COPA	Ubiquitylation	K1184	-0.952	-1.020	_GKPVEK(gl)CPLSGACYSPEFK_
COPB1	Ubiquitylation	K107	-1.160		_K(gl)DLQHPNEFIR_
COPB1	Ubiquitylation	K712		-1.218	_EAADPLASK(gl)LNK_
COPB1	Ubiquitylation	K715	-1.285		_EAADPLASKLNK(gl)_
COPB1	Ubiquitylation	K876		-0.398	_STNMK(gl)CLTPEK_
COPB2	Phosphorylation	S859	-0.448	-0.489	_STAQQELDGKPAS(ph)PTPVIVASHTANKEEK_
COPB2	Phosphorylation	T861	-0.735	-0.376	_STAQQELDGKPASPT(ph)PVIVASHTANKEEK_
COPG1	Ubiquitylation	K213	0.375		_LAVNK(gl)MISK_
COPG1	Ubiquitylation	K600	-1.517		_TESTPITAVK(gl)QPEK_
COPG2	Ubiquitylation	K599	-1.112	-0.988	_AEITLVATK(gl)PEK_
COPZ1	Ubiquitylation	K39	-0.856	0.058	_YYDDTYPSVK(gl)EQK_
COPZ1	Ubiquitylation	K42	-1.066	1.228	_YYDDTYPSVKEQK(gl)_
COPZ1	Ubiquitylation	K46	-1.607	0.461	_AFEK(gl)NIFNK_
COPZ1	Ubiquitylation	K51	-0.475	-1.280	_NIFNK(gl)THR_
COPZ1	Ubiquitylation	K193	-0.631	-0.012	_EQIK(gl)WSLLR_
DNM1	Ubiquitylation	K393	0.542		_EISYAIK(gl)NIHGVR_
DNM1	Phosphorylation	S764	-2.106	-1.205	_EALNIIGDISTSTVSTPVPPPVDDTWLQSASSHS(ph)PTPQR_
NCAPD2	Ubiquitylation	K285		-0.722	_EIGQK(gl)CPQELSR_
NCAPD2	Ubiquitylation	K395		-0.161	_IVQQK(gl)ALPLTR_
NCAPD2	Ubiquitylation	K416		-0.459	_LADK(gl)SVLVCK_
NCAPD2	Ubiquitylation	K452	-1.412	-0.541	_LSDADLAGPLQK(gl)ETQK_
NCAPD2	Ubiquitylation	K456		0.266	_ETQK(gl)LQEMR_
NCAPD2	Phosphorylation	T586		0.016	_NPREST(ph)GNMVTGQTVCK_
NCAPD2	Ubiquitylation	K685		-1.049	_MLPLIWSK(gl)EPGVR_
NCAPD2	Ubiquitylation	K705	-1.261	-0.612	_QLYLNPK(gl)GDSAR_
NCAPD2	Ubiquitylation	K763		-0.693	_ATEK(gl)VACCPLER_
NCAPD2	Ubiquitylation	K904		-0.421	_QALEKLEEK(gl)R_
NCAPD2	Ubiquitylation	K1201		0.002	_DK(gl)QTESLVEK_
NCAPD2	Ubiquitylation	K1301		0.530	_GLDGIK(gl)ELEIGQAGSQR_
NCAPD2	Phosphorylation	S1333		0.844	_YQPLASTAS(ph)DNDFVTPEPR_
NCAPD2	Phosphorylation	T1339		-1.293	_YQPLASTASDNDFVT(ph)PEPR_
SYNJ1	Phosphorylation	T1220	-0.313	-0.087	_ASAGRLT(ph)PESQSK_
SYNJ1	Phosphorylation	S1391	-1.402	-0.873	_S(ph)SPNPFITGLTR_
SYNJ1	Phosphorylation	S1392	-0.543	-0.378	_SS(ph)PNPFITGLTR_
SYNJ1	Phosphorylation	S1565	0.717	0.918	_AS(ph)PTLDFTER_