RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
W

Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
VPS45	2	-1.960	4.060
VPS45	2	-1.960	4.060				0.939	1.074
STXBP2	1	2.660	-1.280					-0.501
VTI1B	1	0.710	-0.320
VPS33A	1	1.740	-0.870					0.283
VPS33B	1	0.750	-0.120
VAMP3	0	-0.800	0.690				0.418
VAMP3	0	-0.800	0.690
SCFD1	0	-0.210	0.810	-0.210	0.253	0.724	0.114	0.376
YKT6	0	0.160	-0.380
STXBP3	0	1.010	-0.860	-0.522			0.293	0.257
EXOC4	0	-0.400	0.600		-0.968	-0.880	0.736	0.348
STXBP1	0	-0.320	0.260				0.349	0.605
EXOC6	0	-0.290	0.470	-0.593
EXOC6	0	-0.290	0.470
EXOC6	0	-0.290	0.470				-0.377	0.154
EXOC6B	0	1.560	-1.230
RAB8A	0	-0.300	0.550				0.568	0.278
RAB8A	0	-0.300	0.550		1.641	-1.484	0.560	0.491
SCFD2	0	-0.760	0.720

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
EXOC4	Ubiquitylation	K9		-0.813	_(ac)AAEAAGGK(gl)YR_
EXOC4	Phosphorylation	S32		0.078	_TLS(ph)TSDDVEDRENEK_
EXOC4	Ubiquitylation	K140	-0.293	0.822	_QVPQK(gl)LEQCMASK_
EXOC4	Phosphorylation	T237	-1.380	-1.265	_DASVPLIDVTNLPT(ph)PR_
EXOC6	Ubiquitylation	K62		-0.546	_SVYDDQPNAHKK(gl)_
EXOC6	Ubiquitylation	K478		-1.008	_IVISK(gl)FPFQDPDLEK_
EXOC6	Ubiquitylation	K607		0.174	_LYGLSTFK(gl)DAR_
EXOC6	Ubiquitylation	K807		-0.883	_LIETVVK(gl)QLR_
EXOC6B	Ubiquitylation	K600		0.431	_LYGTTTFK(gl)DAR_
RAB8A	Ubiquitylation	K3	0.848		_(ac)AK(gl)TYDYLFK_
RAB8A	Ubiquitylation	K138	1.091		_ERGEK(gl)LALDYGIK_
RAB8A	Ubiquitylation	K163		0.199	_LLLGNK(gl)CDMEAK_
RAB8A	Ubiquitylation	K174	-0.188		_VQK(gl)EQADKLAR_
RAB8A	Phosphorylation	S185	0.117	0.264	_KLEGNSPQGS(ph)NQGVK_
RAB8A	Ubiquitylation	K190	-0.573		_LEGNSPQGSNQGVK(gl)ITPDQQK_
RAB8A	Ubiquitylation	K213	-0.059	0.420	_DILLK(gl)SGGR_
SCFD1	Ubiquitylation	K126		0.085	_SK(gl)LEDIANAALAASAVTQVAK_
SCFD1	Phosphorylation	S297		-0.347	_VNLEES(ph)SGVENSPAGARPK_
SCFD1	Phosphorylation	S303	-0.307	-0.139	_VNLEESSGVENS(ph)PAGARPK_
SCFD1	Ubiquitylation	K541	-0.462	-0.990	_NLVLK(gl)QQNLPVTR_
SCFD1	Ubiquitylation	K642	-0.394		_QLSQLGQK(gl)_
SCFD2	Ubiquitylation	K375		-0.780	_ENLPIK(gl)MSMGR_
STXBP1	Ubiquitylation	K184	-0.088		_LAEQIATLCATLK(gl)EYPAVR_
STXBP1	Ubiquitylation	K314	1.042		_SLKDFSSSK(gl)R_
STXBP1	Ubiquitylation	K321	1.198	0.167	_MNTGEK(gl)TTMR_
STXBP1	Ubiquitylation	K332	0.879		_DLSQMLK(gl)K_
STXBP1	Ubiquitylation	K333		0.650	_DLSQMLKK(gl)_
STXBP2	Ubiquitylation	K13		0.730	_AVVGEK(gl)ILSGVIR_
STXBP2	Ubiquitylation	K342	0.616	0.375	_DLSQILK(gl)K_
STXBP2	Ubiquitylation	K343		0.375	_DLSQILK(gl)K_
STXBP3	Ubiquitylation	K19		-0.876	_SVVWQKIK(gl)_
STXBP3	Ubiquitylation	K220	0.734		_KLEDYYK(gl)IDEK_
STXBP3	Ubiquitylation	K224	0.370	0.367	_IDEK(gl)SLIK_
STXBP3	Ubiquitylation	K321	0.844	0.698	_ATEGK(gl)TSLSALTQLMK_
STXBP3	Ubiquitylation	K332	1.105		_TSLSALTQLMK(gl)K_
STXBP3	Ubiquitylation	K333		0.016	_TSLSALTQLMKK(gl)_
STXBP3	Ubiquitylation	K359	-0.603		_FK(gl)LNIEK_
STXBP3	Ubiquitylation	K364		-0.235	_LNIEK(gl)LCK_
STXBP3	Ubiquitylation	K367	0.264	0.382	_LCK(gl)TEQDLALGTDAEGQK_
STXBP3	Ubiquitylation	K384	0.874		_TEQDLALGTDAEGQKVK(gl)DSMR_
STXBP3	Ubiquitylation	K585	1.271		_DK(gl)VSLIKDE_
VAMP3	Phosphorylation	T9	0.318	-0.040	_(ac)STGPTAAT(ph)GSNR_
VAMP3	Phosphorylation	S11	0.474	0.952	_(ac)STGPTAATGS(ph)NR_
VAMP3	Ubiquitylation	K54	0.408	0.792	_VNVDK(gl)VLER_
VAMP3	Phosphorylation	S58	-0.407	0.612	_ADALQAGAS(ph)QFETSAAK_
VAMP3	Ubiquitylation	K61	0.558	0.387	_VLERDQK(gl)LSELDDR_
VAMP3	Phosphorylation	S63		0.374	_ADALQAGASQFETS(ph)AAK_
VPS33A	Ubiquitylation	K67		7.613	_MFTLK(gl)GNR_
VPS33A	Ubiquitylation	K313		-1.029	_DKNFNAVGSVLSK(gl)K_
VPS33A	Ubiquitylation	K314		-1.029	_DKNFNAVGSVLSK(gl)K_
VPS33B	Ubiquitylation	K321		1.641	_GMDIK(gl)QMK_
VPS33B	Ubiquitylation	K480	-0.791		_ITDAFSSLAK(gl)R_
VPS33B	Ubiquitylation	K504	-0.823	-0.779	_VDGEYDLK(gl)VPR_
VPS45	Ubiquitylation	K185		-0.309	_YQLSSEAAK(gl)R_
VPS45	Ubiquitylation	K192	0.231	0.142	_LAECVK(gl)QVITK_
VPS45	Ubiquitylation	K257	-0.698	-0.241	_VPGISK(gl)DLR_
VPS45	Ubiquitylation	K297	-0.027	0.174	_NLMEDFQKK(gl)_
VPS45	Ubiquitylation	K304	0.581		_EQQK(gl)LESIADMK_
VPS45	Ubiquitylation	K330		1.737	_M(ox)SGTVSK(gl)HVTVVGELSR_
VPS45	Ubiquitylation	K378	0.005		_LLQNPK(gl)VTEFDAAR_
VPS45	Ubiquitylation	K443	-0.539	-0.864	_GSDLFSPK(gl)DAVAITK_
VPS45	Ubiquitylation	K450	0.498	0.947	_DAVAITK(gl)QFLK_
VPS45	Ubiquitylation	K454	-0.293	-0.013	_QFLK(gl)GLK_
VPS45	Ubiquitylation	K483	-2.673	-0.766	_LK(gl)ENLYPYLGPSTLR_
VTI1B	Ubiquitylation	K13	0.008	1.711	_(ac)ASSAASSEHFEK(gl)LHEIFR_
YKT6	Ubiquitylation	K103	0.656		_VLDEFSK(gl)QVDR_
YKT6	Phosphorylation	S114		-1.569	_IDWPVGS(ph)PATIHYPALDGHLSR_
YKT6	Ubiquitylation	K141	-0.073		_EADPMTK(gl)VQAELDETK_