RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
AGO4	2	2.110	-1.140
AGO4	2	2.110	-1.140		0.303	-0.277	-0.950	0.328
ATRIP	2	-1.370	1.920	-0.656			0.735	0.448
REXO1	1	0.720	-0.790	-1.646			-0.969	0.791
EXD2	1	2.260	-1.080				0.345	-0.005
AGO1	1	1.720	-1.200
AGO1	1	1.720	-1.200		0.303	-0.277	-0.950	0.328
AGO2	1	0.370	-0.620		0.303	-0.277	-0.950	0.328
MACF1	1						-0.173	-0.431
MACF1	1						-0.599
MACF1	1			0.244			0.182	0.206
MACF1	1						0.796	0.236
TOE1	1	2.440	-1.080	-0.038	-0.115	0.854	-0.555	0.285
CNOT8	1	-1.460	2.820
TTN	1	2.130	-1.190		0.133	0.277	0.244	0.213
AEN	1	2.220	-1.070
REV3L	0	-0.700	0.890
POLQ	0	0.030	0.370		-0.100	0.095
POLD1	0	1.600	-1.300	-0.932			0.362	0.283
POLD1	0	1.600	-1.300
SMARCA2	0	-0.270	0.240	-0.431	-0.133	0.253	0.069	-0.280
ZBED4	0	1.720	-1.030		-0.722	0.752
POLA1	0	0.720	-0.610	0.594			0.355	0.027
ESRP2	0	-0.550	0.730
ERI1	0	-0.350	0.290
RNASEH2A	0	0.140	0.630	1.183
ERI3	0	-0.330	0.790
AGO3	0	0.130	-0.440
PAN2	0	-0.210	0.670
POLG	0	1.190	-0.550		-1.116		-0.380	0.081
PARN	0	-1.190	1.560		0.653	-0.013	-0.219	0.283
ZNF618	0	1.220	-0.850
TMEM161B	0	0.280	-0.620
WRN	0	-0.320	-0.170					0.180
KIAA1586	0	-0.830	0.990
EXOSC10	0	0.160	-0.170		-0.327	-0.108	-0.734	-0.003
RNASEH1	0	1.440	-0.940
TEFM	0	0.070	0.580
POLE	0				-0.404	0.128	-0.376	-0.212
POLE	0			-0.273
ZMYM1	0	0.980	-0.960
CNOT7	0	0.480	-0.730	-0.386
CNOT7	0	0.480	-0.730
NYNRIN	0
FAM200A	0	-0.010	-0.380
ZBED5	0	1.850	-1.230		-0.301	0.039

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
AEN	Ubiquitylation	K109		-1.520	_ASGPLPSK(gl)CVAIDCEMVGTGPR_
AGO1	Ubiquitylation	K364	0.517	1.241	_LTDNQTSTMIK(gl)ATAR_
AGO1	Ubiquitylation	K381		0.665	_SAPDRQEEISK(gl)LMR_
AGO1	Phosphorylation	S387		-0.656	_SAS(ph)FNTDPYVR_
AGO1	Ubiquitylation	K550	0.445	1.991	_VGDTVLGMATQCVQMK(gl)NVQR_
AGO1	Ubiquitylation	K720	-1.047	0.670	_LFCTDK(gl)NER_
AGO1	Ubiquitylation	K726	0.458	0.936	_VGK(gl)SGNIPAGTTVDTK_
AGO2	Ubiquitylation	K381		0.665	_SAPDRQEEISK(gl)LMR_
AGO2	Phosphorylation	S387		-0.656	_SAS(ph)FNTDPYVR_
AGO2	Ubiquitylation	K550	0.445	1.991	_VGDTVLGMATQCVQMK(gl)NVQR_
AGO2	Ubiquitylation	K720	-1.047	0.670	_LFCTDK(gl)NER_
AGO2	Ubiquitylation	K726	0.458	0.936	_VGK(gl)SGNIPAGTTVDTK_
AGO3	Ubiquitylation	K364	0.517	1.241	_LTDNQTSTMIK(gl)ATAR_
AGO4	Ubiquitylation	K364	0.517	1.241	_LTDNQTSTMIK(gl)ATAR_
AGO4	Ubiquitylation	K381		0.665	_SAPDRQEEISK(gl)LMR_
AGO4	Phosphorylation	S387		-0.656	_SAS(ph)FNTDPYVR_
AGO4	Ubiquitylation	K550	0.445	1.991	_VGDTVLGMATQCVQMK(gl)NVQR_
AGO4	Ubiquitylation	K720	-1.047	0.670	_LFCTDK(gl)NER_
AGO4	Ubiquitylation	K726	0.458	0.936	_VGK(gl)SGNIPAGTTVDTK_
ATRIP	Phosphorylation	S224	-0.208	-0.178	_LAAPSVSHVS(ph)PR_
ATRIP	Phosphorylation	S239		0.401	_KNPSVVIKPEACS(ph)PQFGK_
ATRIP	Phosphorylation	S518	1.549	1.561	_SLVHRLS(ph)DGDM(ox)TSALR_
CNOT7	Ubiquitylation	K200	-1.098	-0.157	_YLMK(gl)SCK_
CNOT8	Ubiquitylation	K200	-1.098	-0.157	_YLMK(gl)SCK_
CNOT8	Ubiquitylation	K269	-0.696	-0.445	_LYGLGTGVAQK(gl)QNEDVDSAQEK_
ERI1	Ubiquitylation	K92		0.194	_LSEFK(gl)LETR_
ERI3	Ubiquitylation	K276		-0.200	_QWINLK(gl)K_
ERI3	Ubiquitylation	K331		-0.515	_GFIFK(gl)QTSKPF_
ESRP2	Ubiquitylation	K278		0.103	_FFK(gl)GLNVAR_
EXOSC10	Ubiquitylation	K591		-1.148	_SEVAAGVK(gl)K_
EXOSC10	Ubiquitylation	K592		-1.148	_SEVAAGVK(gl)K_
EXOSC10	Ubiquitylation	K680		-1.926	_GPLTVAQKK(gl)_
EXOSC10	Ubiquitylation	K710		-1.867	_APVSQAAK(gl)FDPSTK_
EXOSC10	Ubiquitylation	K716		-2.215	_FDPSTK(gl)IYEISNR_
FAM200A	Ubiquitylation	K42		-2.076	_NK(gl)VESSPQVLSR_
KIAA1586	Ubiquitylation	K162		-1.998	_LGCK(gl)DCSAVR_
KIAA1586	Ubiquitylation	K275		-0.720	_ELQEK(gl)NGEVNCLNTR_
KIAA1586	Ubiquitylation	K460		-0.888	_NQTK(gl)LLGTVAK_
KIAA1586	Ubiquitylation	K475		-0.791	_ELETEIIK(gl)IGR_
KIAA1586	Ubiquitylation	K597		-1.594	_NNK(gl)FNALPR_
KIAA1586	Ubiquitylation	K694		-1.195	_SNNVSIPTTIYKAK(gl)_
MACF1	Ubiquitylation	K189	-0.349		_AVLLPLQGETAVEK(gl)GNIQR_
MACF1	Phosphorylation	S312	1.509	0.797	_LLDAEDVDVPS(ph)PDEK_
MACF1	Phosphorylation	S1399	-0.230	-0.113	_AFVESQQKS(ph)PGK_
MACF1	Phosphorylation	S3959	1.328	0.973	_RQGS(ph)FSEDVISHK_
MACF1	Phosphorylation	S3961		0.813	_RQGS(ph)FSEDVISHK_
MACF1	Phosphorylation	S4527	0.479		_SMDAM(ox)S(ph)SPTKTETVK_
MACF1	Phosphorylation	S4528	0.586	-0.026	_SMDAMSS(ph)PTKTETVK_
MACF1	Phosphorylation	S4553	0.011	-0.229	_AFLAELEQNS(ph)PK_
MACF1	Phosphorylation	T5728	0.246	0.783	_EVEEELAT(ph)SGGQSPTGEQIPQFQQR_
MACF1	Phosphorylation	S5733		1.034	_EVEEELATSGGQS(ph)PTGEQIPQFQQR_
MACF1	Phosphorylation	S7105	-1.286	-1.582	_S(ph)LSQPTPPPMPILSQSEAK_
NYNRIN	Phosphorylation	S660	-1.993	-1.417	_APAAS(ph)KAPAAPK_
PAN2	Phosphorylation	S671	0.047	0.183	_CGS(ph)ETVRAS(ph)STLLFT(ph)LS(ph)YPDGS(ph)K_
PAN2	Phosphorylation	S677	0.047	0.183	_CGS(ph)ETVRAS(ph)STLLFT(ph)LS(ph)YPDGS(ph)K_
PAN2	Phosphorylation	T683	0.047	0.183	_CGS(ph)ETVRAS(ph)STLLFT(ph)LS(ph)YPDGS(ph)K_
PAN2	Phosphorylation	S685	0.047	0.183	_CGS(ph)ETVRAS(ph)STLLFT(ph)LS(ph)YPDGS(ph)K_
PAN2	Phosphorylation	S690	0.047	0.183	_CGS(ph)ETVRAS(ph)STLLFT(ph)LS(ph)YPDGS(ph)K_
PAN2	Ubiquitylation	K706		0.506	_NYDFAQVLK(gl)R_
PAN2	Phosphorylation	S791	0.606	0.694	_ELGS(ph)PEGVLVCPSIEELK_
PAN2	Ubiquitylation	K997		-2.499	_SDGTK(gl)STIKPSQMSVAR_
PARN	Phosphorylation	S557	0.812	0.283	_NNS(ph)FTAPSTVGK_
PARN	Phosphorylation	S619	0.501	0.675	_KELS(ph)PAGSISK_
POLA1	Phosphorylation	S192	-0.049	-0.187	_S(ph)IGASPNPFSVHTATAVPSGK_
POLA1	Phosphorylation	S196		-0.374	_RSIGAS(ph)PNPFSVHTATAVPSGK_
POLA1	Ubiquitylation	K1120		-0.317	_DTIVENIQK(gl)R_
POLD1	Ubiquitylation	K414		-1.315	_AQTLK(gl)VQTFPFLGR_
POLD1	Ubiquitylation	K439		-1.108	_DSSFQSK(gl)QTGRR_
POLD1	Ubiquitylation	K447		-1.286	_DTK(gl)VVSMVGR_
POLD1	Ubiquitylation	K554		-0.798	_GQQVK(gl)VVSQLLR_
POLD1	Ubiquitylation	K674	-1.082	-1.843	_TPTGDEFVK(gl)TSVR_
POLD1	Ubiquitylation	K758		-0.638	_TK(gl)QLVESK_
POLD1	Ubiquitylation	K853	-0.080	-1.776	_MDCK(gl)GLEAVR_
POLD1	Ubiquitylation	K911	-0.089	-0.915	_IDISQLVITK(gl)ELTR_
POLD1	Ubiquitylation	K923		-2.496	_AASDYAGK(gl)QAHVELAER_
POLD1	Ubiquitylation	K1033	0.475	-0.930	_VGGLLAFAK(gl)R_
POLD1	Ubiquitylation	K1065	-0.208		_ESELYQK(gl)EVSHLNALEER_
POLE	Ubiquitylation	K187		-0.801	_EISPAVKK(gl)_
POLE	Ubiquitylation	K436		-0.163	_DSYLPVGSHNLK(gl)AAAK_
POLE	Ubiquitylation	K1061		-1.582	_KLEDYGEQK(gl)STSISTAK_
POLE	Ubiquitylation	K1081		-1.440	_LAEFLGDQMVK(gl)DAGLSCR_
POLE	Ubiquitylation	K1385	-1.054	-0.957	_VAK(gl)AEEGASYR_
POLE	Ubiquitylation	K1573		-0.910	_AETDLK(gl)TICR_
POLE	Ubiquitylation	K1587		-0.722	_FLLAYK(gl)EER_
POLE	Ubiquitylation	K2121	0.432		_YVCK(gl)VLSLDTNITNQVNK_
POLE	Ubiquitylation	K2135	-0.740	-1.214	_VLSLDTNITNQVNK(gl)LNR_
POLG	Ubiquitylation	K371		-2.064	_LYVGGPPLEK(gl)EPR_
POLG	Ubiquitylation	K990		-1.545	_AQQMYAATK(gl)GLR_
REV3L	Phosphorylation	S1724	0.363	0.417	_SGTLS(ph)PEIFEK_
REXO1	Phosphorylation	S499	1.567	0.361	_S(ph)LDEGASQDAPK_
RNASEH1	Phosphorylation	S76	-0.334	-0.047	_SAS(ph)PEVSEGHENQHGQESEAK_
RNASEH2A	Ubiquitylation	K64	-0.163	-0.965	_LADLEALK(gl)VADSK_
RNASEH2A	Ubiquitylation	K69		-1.087	_VADSK(gl)TLLESERER_
SMARCA2	Phosphorylation	S329	-0.314	-0.351	_IS(ph)PIQKPQGLDPVEILQER_
SMARCA2	Ubiquitylation	K333	-1.365		_ISPIQK(gl)PQGLDPVEILQER_
SMARCA2	Ubiquitylation	K381	0.558	1.360	_ATVELK(gl)ALR_
SMARCA2	Ubiquitylation	K413	-0.238		_DTTLETALNSK(gl)AYKR_
SMARCA2	Phosphorylation	S1377	-0.887	-1.142	_GRPPAEKLS(ph)PNPPK_
TEFM	Ubiquitylation	K137	0.588		_STVQVCNSILCPK(gl)TGR_
TMEM161B	Ubiquitylation	K54		0.410	_ILAGK(gl)QQK_
TOE1	Phosphorylation	S5	0.486	0.438	_AADS(ph)DDGAVSAPAASDGGVSK_
TTN	Ubiquitylation	K27327	-0.283	0.183	_AGEVLK(gl)INADIAGR_
WRN	Ubiquitylation	K134		0.717	_MLLENKAVK(gl)_
WRN	Phosphorylation	S1133	0.363	0.023	_SIMVQS(ph)PEK_
ZBED4	Phosphorylation	S623	0.394	0.150	_TEVSETARPS(ph)SPDTR_
ZBED4	Phosphorylation	S624	0.229	0.020	_TEVSETARPSS(ph)PDTR_
ZMYM1	Ubiquitylation	K671	0.087	-0.322	_SSK(gl)AILIK_
ZMYM1	Ubiquitylation	K929	-0.617		_GFK(gl)VEKPSLQK_
ZMYM1	Ubiquitylation	K1140	-0.043	-0.219	_FISQMK(gl)EI_
ZNF618	Ubiquitylation	K494	0.188		_EFLK(gl)LAQTLVDSGAR_