RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
RPA1	6	0.500	0.350	3.133	3.046	0.303	1.770	2.112
NIFK	3	-2.120	3.810				-1.010	-0.375
TOPBP1	3	-2.480	4.260				-0.269	0.277
BRCA1	2	0.200	-0.140	0.433			0.018	0.146
KIFAP3	2	-0.390	0.750
BRD4	2	-0.320	0.280	0.080	0.220	0.614	0.191	0.117
CHEK1	2	-1.170	1.560
CHEK1	2	-1.170	1.560
HIST1H1E	2	0.010	0.000	-2.077	-1.246	-0.337	-1.149	-1.118
HIST1H1T	2	-0.750	0.400
H2AFX	2			-0.474	-0.395	0.182	0.824	0.499
H2AFX	2
LIG3	1	-0.380	2.090		-0.284	0.336	0.549	0.370
CHMP1A	1	-2.380	5.780
TTN	1	2.130	-1.190		0.133	0.277	0.244	0.213
NOL6	1	-0.270	0.690				-0.136	-0.059
RAD51	0	-1.260	1.920
MLH1	0	-0.460	0.110	-0.360	1.227	1.219
SUN2	0	-0.400	1.600		-2.388	-0.078	0.839	0.876
NEK2	0	-0.540	0.300
TUBG1	0	-0.710	1.260	-0.141	-0.630	-0.211	-0.844	-0.821
LRPPRC	0	0.110	-0.740	-0.075	0.032	-0.336	0.525	0.443
P3H4	0	0.290	-0.450				-1.082	-0.310
ADD3	0	-1.290	1.910		0.268	-0.377	0.481	1.104
RRS1	0	-0.380	-0.480				-0.603	-0.226
RCC1	0	-0.180	0.240	-0.398	0.623	-0.380	0.480	0.104

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ADD3	Phosphorylation	T11	-1.070		_(ac)SSDASQGVIT(ph)TPPPPSM(ox)PHK_
ADD3	Phosphorylation	T12	-0.760	-0.484	_(ac)SSDASQGVITT(ph)PPPPSMPHK_
ADD3	Ubiquitylation	K21	-0.862		_(ac)SSDASQGVITTPPPPSMPHK(gl)ER_
ADD3	Phosphorylation	S42		0.088	_NMS(ph)PDLRQDFNMMEQR_
ADD3	Phosphorylation	S64		0.379	_VTQILQS(ph)PAFREDLECLIQEQMK_
ADD3	Ubiquitylation	K280	-0.136	0.353	_IQLQK(gl)VLGPSCK_
ADD3	Phosphorylation	S423	-0.556	-0.594	_SDVEIPATVTAFSFEDDTVPLS(ph)PLK_
ADD3	Phosphorylation	S442		-1.117	_WLNS(ph)PNTYMK_
ADD3	Phosphorylation	S478		-2.024	_VS(ph)GGTPIKIEDPNQFVPLNTNPNEVLEK_
ADD3	Phosphorylation	T481		-2.024	_VS(ph)GGTPIKIEDPNQFVPLNTNPNEVLEK_
ADD3	Phosphorylation	S673	-0.046		_IEEVLS(ph)PEGSPSKSPSK_
ADD3	Phosphorylation	S677	0.077	-0.026	_IEEVLSPEGS(ph)PSKS(ph)PSK_
ADD3	Phosphorylation	S679	-0.270	-0.195	_SPEKIEEVLSPEGSPS(ph)KSPSK_
ADD3	Phosphorylation	S681	0.027	0.143	_IEEVLSPEGSPSKS(ph)PSK_
ADD3	Phosphorylation	S683	0.203	-0.184	_IEEVLSPEGSPSKSPS(ph)K_
BRCA1	Phosphorylation	S123	0.465	0.445	_KENNSPEHLKDEVS(ph)IIQSM(ox)GYR_
BRCA1	Phosphorylation	S753	2.662	4.077	_VSNNAEDPKDLMLS(ph)GER_
BRCA1	Phosphorylation	S1009	0.733	1.028	_KNLLEENFEEHSM(ox)S(ph)PER_
BRCA1	Phosphorylation	S1546	1.821	2.105	_NYPS(ph)QEELIK_
BRCA1	Phosphorylation	S1564		3.065	_VVDVEEQQLEES(ph)GPHDLTETSYLPR_
BRCA1	Phosphorylation	S1664		1.120	_EKPELTAS(ph)TER_
BRD4	Phosphorylation	S469	-0.308	-1.544	_MPDEPEEPVVAVS(ph)SPAVPPPTK_
BRD4	Phosphorylation	S470	-0.308	-0.758	_MPDEPEEPVVAVSS(ph)PAVPPPTK_
BRD4	Phosphorylation	S1083	-1.699	-1.783	_EAPSPLMIHSPQMSQFQSLTHQS(ph)PPQQNVQPK_
BRD4	Phosphorylation	S1117	2.833	1.857	_IHS(ph)PIIR_
BRD4	Phosphorylation	S1126	1.336	0.890	_SEPFS(ph)PSLRPEPPKHPESIK_
CHEK1	Ubiquitylation	K53	0.879		_AVDCPENIK(gl)K_
CHEK1	Ubiquitylation	K54	0.738		_AVDCPENIKK(gl)_
CHEK1	Phosphorylation	S296	-0.098	0.184	_VTS(ph)GGVSESPSGFSK_
CHEK1	Phosphorylation	S300		1.091	_VTSGGVS(ph)ESPSGFSK_
CHEK1	Phosphorylation	S302	1.750		_VTSGGVSES(ph)PSGFSK_
CHEK1	Phosphorylation	S317		1.903	_HIQSNLDFS(ph)PVNSASSEENVK_
CHEK1	Ubiquitylation	K399	-0.582		_ETCEK(gl)LGYQWK_
CHMP1A	Ubiquitylation	K40	1.065	0.286	_ALLQK(gl)NVECAR_
CHMP1A	Ubiquitylation	K55	0.592		_K(gl)KNEGVNWLR_
CHMP1A	Ubiquitylation	K56	0.592		_K(gl)KNEGVNWLR_
CHMP1A	Ubiquitylation	K87	1.017	0.050	_VQTAVTMKGVTK(gl)_
CHMP1A	Ubiquitylation	K94	0.333		_NMAQVTK(gl)ALDK_
H2AFX	Ubiquitylation	K116	-0.071		_ATIAGGGVIPHIHK(gl)SLIGK_
H2AFX	Ubiquitylation	K120	0.702	0.181	_K(gl)TSATVGPK_
H2AFX	Ubiquitylation	K121	1.548	0.818	_SLIGK(gl)K(gl)GQQK_
H2AFX	Ubiquitylation	K122	1.238	-0.400	_SLIGK(gl)K(gl)GQQK_
H2AFX	Ubiquitylation	K126	1.132		_KGQQK(gl)TV_
H2AFX	Ubiquitylation	K128	-0.411	0.117	_KTSATVGPK(gl)APSGGKK_
H2AFX	Phosphorylation	S140	1.817	1.205	_KATQAS(ph)QEY_
HIST1H1E	Phosphorylation	S2	-1.308	-1.220	_S(ph)ETAPAAPAAPAPAEK_
HIST1H1E	Phosphorylation	T4	-1.741	-0.745	_(ac)SET(ph)APAAPAAPAPAEK_
HIST1H1E	Phosphorylation	T18	-2.773	-1.986	_(ac)S(ph)ETAPAAPAAPAPAEKT(ph)PVKK_
HIST1H1E	Phosphorylation	S36		-0.319	_RKAS(ph)GPPVSELITK_
HIST1H1T	Ubiquitylation	K64	1.076	1.046	_K(gl)ALAAAGYDVEKNNSR_
HIST1H1T	Ubiquitylation	K75	1.615	2.152	_KALAAAGYDVEK(gl)NNSR_
KIFAP3	Ubiquitylation	K59	-1.310	0.084	_LK(gl)SLNANTDITSLAR_
KIFAP3	Phosphorylation	S60	2.143	2.221	_LKS(ph)LNANTDITSLAR_
KIFAP3	Ubiquitylation	K274		1.135	_YQGLVVK(gl)QEQLLR_
KIFAP3	Ubiquitylation	K380		0.772	_NK(gl)MVQVGLLPK_
KIFAP3	Ubiquitylation	K477		-0.743	_ALK(gl)FKDPLLM(ox)K_
KIFAP3	Ubiquitylation	K479		-0.092	_ALKFK(gl)DPLLM(ox)K_
KIFAP3	Ubiquitylation	K675		0.026	_IQSEK(gl)FR_
LIG3	Phosphorylation	T209	-0.306	-0.552	_LTTTGQVT(ph)SPVK_
LIG3	Phosphorylation	S210	-0.163	0.011	_LTTTGQVTS(ph)PVK_
LIG3	Phosphorylation	S241	-0.868	-0.902	_PNNSGEAPS(ph)SPTPK_
LIG3	Phosphorylation	S242	-0.782	-0.612	_FSGFSAKPNNSGEAPSS(ph)PTPK_
LIG3	Ubiquitylation	K728	0.493	0.853	_WCTVTK(gl)CAGGHDDATLAR_
LIG3	Ubiquitylation	K833	1.857	0.467	_ELYQLSK(gl)EK_
NEK2	Ubiquitylation	K152		-2.296	_DLKPANVFLDGK(gl)QNVK_
NEK2	Ubiquitylation	K353		-1.746	_AENLLK(gl)NYSLLK_
NEK2	Ubiquitylation	K359		-0.192	_NYSLLK(gl)ER_
NEK2	Ubiquitylation	K409		-0.182	_SENSESQLTSKSK(gl)_
NIFK	Ubiquitylation	K158	2.933	2.265	_TLTQK(gl)LR_
NIFK	Phosphorylation	T223	-1.929	-1.474	_VSGTLDT(ph)PEKTVDSQGPTPVCTPTFLER_
NIFK	Phosphorylation	T234	-0.194	-0.527	_TVDSQGPT(ph)PVCT(ph)PTFLER_
NIFK	Phosphorylation	T238	-0.194	-0.527	_TVDSQGPT(ph)PVCT(ph)PTFLER_
NIFK	Phosphorylation	T279		0.375	_EEIQETQT(ph)PTHSR_
NOL6	Phosphorylation	S811		1.673	_EVQS(ph)PEGMISLR_
P3H4	Ubiquitylation	K174		-0.922	_NPK(gl)HELTAK_
P3H4	Ubiquitylation	K213	-1.090	-0.059	_AVK(gl)LYNSGDFR_
RAD51	Ubiquitylation	K64	-1.228		_KELINIK(gl)GISEAK_
RCC1	Phosphorylation	S11	-0.620	-0.233	_S(ph)PPADAIPK_
RCC1	Ubiquitylation	K232	0.594	0.184	_CVMLK(gl)SR_
RCC1	Ubiquitylation	K335	-0.717	-0.175	_LGLGEGAEEK(gl)SIPTLISR_
RCC1	Ubiquitylation	K362	0.749	0.361	_LPAVSSVACGASVGYAVTK(gl)DGR_
RPA1	Ubiquitylation	K163	2.827	4.085	_AYGASK(gl)TFGK_
RPA1	Ubiquitylation	K167	3.009	3.243	_TFGK(gl)AAGPSLSHTSGGTQSK_
RPA1	Ubiquitylation	K183	0.925		_AAGPSLSHTSGGTQSK(gl)VVPIASLTPYQSK_
RPA1	Ubiquitylation	K263	-1.803		_GTLK(gl)IANK_
RPA1	Ubiquitylation	K267	2.751		_IANK(gl)QFTAVK_
RPA1	Ubiquitylation	K331	3.112	4.066	_SYEDATK(gl)ITVR_
RPA1	Ubiquitylation	K410	2.458		_SLSVLSSSTIIANPDIPEAYK(gl)LR_
RPA1	Ubiquitylation	K489	0.465	2.335	_K(gl)VIDQQNGLYR_
RPA1	Ubiquitylation	K588	-0.055		_IK(gl)ATVMDVKPVDYR_
RPA1	Ubiquitylation	K595	1.201		_ATVMDVK(gl)PVDYR_
SUN2	Ubiquitylation	K379		-0.225	_EAALK(gl)EDFRR_
TOPBP1	Ubiquitylation	K789	-0.950		_FQSK(gl)AFR_
TOPBP1	Phosphorylation	S888	2.918	1.917	_NAVALSAS(ph)PQLK_
TTN	Ubiquitylation	K27327	-0.283	0.183	_AGEVLK(gl)INADIAGR_
TUBG1	Ubiquitylation	K287	1.041	-0.053	_K(gl)TTVLDVMR_
TUBG1	Ubiquitylation	K301	0.057	-0.550	_LLQPK(gl)NVMVSTGR_