RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
JUN	3	-0.930	0.930			-0.126
TOP1	3	0.970	-0.880
TOP1	3	0.970	-0.880	0.567	0.872	1.232	0.631	0.425
ATRX	2	0.050	0.010				0.582	0.629
MSH6	2	-0.410	0.140	-0.115	0.232	0.645	0.407	0.101
RAD21	2	-1.050	0.820	2.113	0.118	0.244	0.668	0.414
RAD21L1	2			2.113	0.118	0.244	0.668	0.414
MSH2	1	-0.130	0.010	0.224	0.457	0.838	0.840	0.366
SMARCB1	1	0.850	-0.060	0.041	-0.003	0.699	0.354	-0.731
SMARCB1	1	0.850	-0.060		0.738	1.594
TOP2A	1	-1.940	3.540
TOP2A	1	-1.940	3.540	-1.993			0.211	0.211
PBRM1	1	1.130	-0.860	0.203	-0.319	0.305	0.606	0.462
TERF2IP	1	0.500	-0.780	-0.491	1.304	2.217	-1.505	-0.760
TERF2IP	1	1.450	-1.010	-0.491	1.304	2.217	-1.505	-0.760
TERF2IP	1	1.580	-0.650	-0.491	1.304	2.217	-1.505	-0.760
BAZ1A	1	1.600	-0.840	0.255	0.401	0.236	0.064	0.088
NCAPD2	0	-0.870	0.320	-0.142			-0.071	-0.184
RAD51	0	-1.260	1.920
SMARCE1	0	-0.270	0.280	0.341
SMARCE1	0	-0.270	0.280		0.251	0.796	0.284	0.349
BIRC5	0						-0.309	-0.536
MSH3	0	0.890	-0.360	-0.771	0.719	0.629	0.421	0.240
SMC2	0	-0.770	1.000		-0.048	0.476	-0.227	-0.071
SMC2	0	-0.770	1.000
SMC2	0	-0.770	1.000	0.106
HMGA2	0	0.340	-0.490
SPIDR	0	-0.940	1.010
BLM	0	1.270	-0.830	-0.850	-0.141	0.144	0.151	0.149
BLM	0	1.270	-0.830

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ATRX	Phosphorylation	S34	-0.115	-0.055	_LHDFLAHSSEESEETSS(ph)PPR_
ATRX	Phosphorylation	S92	-0.219	-0.386	_YVES(ph)DDEKPLDDETVNEDASNENSENDITMQSLPK_
ATRX	Phosphorylation	S313	0.766	0.451	_VYEHTS(ph)RFSPK_
ATRX	Phosphorylation	S316		0.668	_VYEHTSRFS(ph)PK_
ATRX	Ubiquitylation	K403	0.759		_SVLADIK(gl)K_
ATRX	Ubiquitylation	K404	0.759		_SVLADIK(gl)K_
ATRX	Phosphorylation	S596		0.021	_LTPVSLS(ph)NSPIKGADCQEVPQDKDGYK_
ATRX	Phosphorylation	S598	-0.157	-0.195	_LTPVSLSNS(ph)PIK_
ATRX	Phosphorylation	S677	0.048	0.009	_RPTETNPVTSNS(ph)DEECNETVKEK_
ATRX	Phosphorylation	S819	0.797	0.578	_RQTQSESSNYDS(ph)ELEKEIK_
ATRX	Phosphorylation	S871	3.829	4.009	_NLKTS(ph)QEGSSDDAER_
ATRX	Phosphorylation	T887	1.203	1.421	_ET(ph)FSSAEGTVDKDTTIMELR_
ATRX	Phosphorylation	S889	0.942		_ETFS(ph)SAEGTVDKDTTIMELR_
ATRX	Phosphorylation	S1061	1.043	0.887	_KDELS(ph)DYAEK_
ATRX	Phosphorylation	S1527	-0.080	0.235	_EVIEIEDAS(ph)PTKCPITTK_
ATRX	Ubiquitylation	K2182		-0.315	_QVTK(gl)QSLSFR_
BAZ1A	Ubiquitylation	K387	2.679		_K(gl)YVEYLK_
BAZ1A	Ubiquitylation	K598	-0.245	1.101	_LSNPSLVK(gl)K_
BAZ1A	Ubiquitylation	K599		0.354	_LSNPSLVKK(gl)_
BAZ1A	Phosphorylation	T731	0.334	0.083	_ELDQDMVT(ph)EDEDDPGSHK_
BAZ1A	Ubiquitylation	K973	-0.227	-0.485	_SSNAYDPSQMCAEK(gl)QLELR_
BAZ1A	Phosphorylation	S1019	0.477	0.773	_YELLS(ph)EENKENGIIK_
BAZ1A	Phosphorylation	S1283	0.833	0.346	_LSSSFS(ph)SR_
BAZ1A	Phosphorylation	S1413	-0.574	-0.355	_RQS(ph)PEPSPVTLGR_
BAZ1A	Phosphorylation	S1546	-0.396		_LGLHVTPSNVDQVS(ph)TPPAAK_
BAZ1A	Phosphorylation	T1547	-0.504	-0.584	_LGLHVTPSNVDQVST(ph)PPAAK_
BIRC5	Ubiquitylation	K15		-1.446	_(ac)GAPTLPPAWQPFLK(gl)DHR_
BIRC5	Ubiquitylation	K113	0.088	-0.061	_HSSGCAFLSVK(gl)K_
BIRC5	Ubiquitylation	K114		-0.061	_HSSGCAFLSVK(gl)K_
BLM	Phosphorylation	S144		1.234	_KLEFSSS(ph)PDSLSTINDWDDMDDFDTSETSK_
HMGA2	Phosphorylation	S44	-0.564	-0.762	_KQQQEPTGEPS(ph)PK_
HMGA2	Phosphorylation	S105	-0.055	-0.046	_KPAQEETEETSSQES(ph)AEED_
JUN	Phosphorylation	S58	-0.167	-1.247	_AKNS(ph)DLLTSPDVGLLK_
JUN	Phosphorylation	T62	2.545	1.674	_NSDLLT(ph)SPDVGLLK_
JUN	Phosphorylation	S63	2.030	1.458	_NSDLLTS(ph)PDVGLLK_
JUN	Ubiquitylation	K70	9.213		_NSDLLTSPDVGLLK(gl)_
JUN	Phosphorylation	S73	1.499	0.845	_LAS(ph)PELER_
JUN	Phosphorylation	S243	-0.642	-1.399	_LQALKEEPQTVPEMPGETPPLS(ph)PIDMESQER_
JUN	Ubiquitylation	K309	1.034	0.155	_EQVAQLK(gl)QK_
MSH2	Ubiquitylation	K212		-0.233	_ECVLPGGETAGDMGK(gl)LR_
MSH2	Ubiquitylation	K249	0.461		_K(gl)GEQMNSAVLPEMENQVAVSSLSAVIK_
MSH2	Ubiquitylation	K347		2.867	_LVNQWIK(gl)QPLMDK_
MSH2	Ubiquitylation	K531	1.040		_VTCKEEK(gl)VLR_
MSH2	Ubiquitylation	K555		0.164	_FTNSK(gl)LTSLNEEYTK_
MSH2	Ubiquitylation	K635		-0.376	_IILK(gl)ASR_
MSH6	Phosphorylation	S41	-0.708	-0.948	_AAAAPGAS(ph)PSPGGDAAWSEAGPGPRPLAR_
MSH6	Phosphorylation	S43	0.319	-0.234	_AAAAPGASPS(ph)PGGDAAWSEAGPGPR_
MSH6	Phosphorylation	S137	0.203	0.359	_VHVQFFDDS(ph)PTR_
MSH6	Phosphorylation	T139	0.209		_VHVQFFDDSPT(ph)R_
MSH6	Phosphorylation	S227	-0.199	-0.192	_SEEDNEIES(ph)EEEVQPK_
MSH6	Ubiquitylation	K334		0.193	_QATSISSETK(gl)NTLR_
MSH6	Ubiquitylation	K476	1.536	0.184	_YSDSLVQK(gl)GYK_
MSH6	Ubiquitylation	K519	2.264	0.186	_IITK(gl)GTQTYSVLEGDPSENYSK_
MSH6	Ubiquitylation	K728	0.082	-0.280	_SGAIFTK(gl)AYQR_
MSH6	Ubiquitylation	K771	-0.582	-1.069	_VDTCHTPFGK(gl)R_
MSH6	Phosphorylation	S830	0.130	1.666	_IHNVGS(ph)PLK_
MSH6	Ubiquitylation	K852		-0.044	_AIMYEETTYSK(gl)K_
MSH6	Ubiquitylation	K853		-0.044	_AIMYEETTYSK(gl)K_
MSH6	Ubiquitylation	K896		-0.342	_QVISLQTK(gl)NPEGR_
MSH6	Ubiquitylation	K997		-0.863	_NLPEEYELK(gl)STK_
MSH6	Ubiquitylation	K1009		-0.817	_YWTK(gl)TIEK_
MSH6	Ubiquitylation	K1030	0.394	-0.156	_DVSLK(gl)DCMR_
MSH6	Ubiquitylation	K1240		-0.672	_ELAETIK(gl)CR_
MSH6	Ubiquitylation	K1291		0.633	_FIK(gl)GACPK_
MSH6	Ubiquitylation	K1296		-1.142	_GACPK(gl)SYGFNAAR_
MSH6	Ubiquitylation	K1315		-1.738	_LANLPEEVIQK(gl)GHR_
MSH6	Ubiquitylation	K1325		-0.190	_EFEK(gl)MNQSLR_
NCAPD2	Ubiquitylation	K285		-0.722	_EIGQK(gl)CPQELSR_
NCAPD2	Ubiquitylation	K395		-0.161	_IVQQK(gl)ALPLTR_
NCAPD2	Ubiquitylation	K416		-0.459	_LADK(gl)SVLVCK_
NCAPD2	Ubiquitylation	K452	-1.412	-0.541	_LSDADLAGPLQK(gl)ETQK_
NCAPD2	Ubiquitylation	K456		0.266	_ETQK(gl)LQEMR_
NCAPD2	Phosphorylation	T586		0.016	_NPREST(ph)GNMVTGQTVCK_
NCAPD2	Ubiquitylation	K685		-1.049	_MLPLIWSK(gl)EPGVR_
NCAPD2	Ubiquitylation	K705	-1.261	-0.612	_QLYLNPK(gl)GDSAR_
NCAPD2	Ubiquitylation	K763		-0.693	_ATEK(gl)VACCPLER_
NCAPD2	Ubiquitylation	K904		-0.421	_QALEKLEEK(gl)R_
NCAPD2	Ubiquitylation	K1201		0.002	_DK(gl)QTESLVEK_
NCAPD2	Ubiquitylation	K1301		0.530	_GLDGIK(gl)ELEIGQAGSQR_
NCAPD2	Phosphorylation	S1333		0.844	_YQPLASTAS(ph)DNDFVTPEPR_
NCAPD2	Phosphorylation	T1339		-1.293	_YQPLASTASDNDFVT(ph)PEPR_
PBRM1	Phosphorylation	T9	-0.114		_AT(ph)SPSSSVSGDFDDGHHSVSTPGPSR_
PBRM1	Phosphorylation	S10	-0.217	-0.034	_ATS(ph)PSSSVSGDFDDGHHSVSTPGPSR_
PBRM1	Phosphorylation	S14	0.006		_ATSPSSS(ph)VSGDFDDGHHSVSTPGPSR_
PBRM1	Phosphorylation	S39	1.987	0.805	_RLS(ph)NLPTVDPIAVCHELYNTIR_
PBRM1	Phosphorylation	S177	0.200		_GEADDEDDDEDGQDNQGTVTEGS(ph)SPAYLK_
PBRM1	Phosphorylation	S178	0.199	0.037	_GEADDEDDDEDGQDNQGTVTEGSS(ph)PAYLK_
PBRM1	Phosphorylation	S636		-1.172	_ELGPLPDDDDM(ox)AS(ph)PK_
PBRM1	Ubiquitylation	K1019	-0.114		_EVFK(gl)SDYYNKVPVSK_
PBRM1	Ubiquitylation	K1293	-1.845		_K(gl)PIVPQKEPSPLLEK_
PBRM1	Ubiquitylation	K1398	-0.220		_AVIK(gl)AQHPDYSFGELSR_
PBRM1	Ubiquitylation	K1642	0.436	-0.821	_DVHLSK(gl)EQESR_
RAD21	Ubiquitylation	K72		0.517	_AK(gl)YLLADCNEAFIK_
RAD21	Ubiquitylation	K335	-0.110	-0.497	_ELDSK(gl)TIR_
RAD21	Ubiquitylation	K364	0.738	0.610	_LMMWK(gl)ETGGVEK_
RAD21	Ubiquitylation	K387	-0.350		_LLK(gl)LFTR_
RAD21	Ubiquitylation	K573	1.907		_ALAK(gl)TGAESISLLELCR_
RAD21L1	Ubiquitylation	K72		0.517	_AK(gl)YLLADCNEAFIK_
RAD21L1	Ubiquitylation	K335	-0.110	-0.497	_ELDSK(gl)TIR_
RAD21L1	Ubiquitylation	K364	0.738	0.610	_LMMWK(gl)ETGGVEK_
RAD21L1	Ubiquitylation	K387	-0.350		_LLK(gl)LFTR_
RAD21L1	Ubiquitylation	K573	1.907		_ALAK(gl)TGAESISLLELCR_
RAD51	Ubiquitylation	K64	-1.228		_KELINIK(gl)GISEAK_
SMARCB1	Ubiquitylation	K13	0.411	-0.949	_TFGQK(gl)PVK_
SMARCB1	Ubiquitylation	K208		-0.170	_LDMEIDGQK(gl)LR_
SMARCE1	Ubiquitylation	K92	0.706		_ASNPDLK(gl)LWEIGK_
SMARCE1	Ubiquitylation	K271	-0.418	-0.010	_FLESTDSFNNELK(gl)R_
SMC2	Ubiquitylation	K1026	0.131	-0.616	_ILTTIEDLDQKK(gl)_
SPIDR	Ubiquitylation	K346		-0.669	_VLFTK(gl)ETAGYLR_
TERF2IP	Phosphorylation	S36	0.199	-0.039	_DDGSSMSFYVRPS(ph)PAK_
TERF2IP	Phosphorylation	S154	0.255	-0.049	_S(ph)PSSVTGNALWK_
TERF2IP	Phosphorylation	S156	0.369	0.179	_ENARSPS(ph)SVTGNALWK_
TERF2IP	Phosphorylation	S157		0.410	_ENARSPSS(ph)VTGNALWK_
TERF2IP	Phosphorylation	S203	-0.351	-0.260	_YLLGDAPVS(ph)PSSQK_
TERF2IP	Ubiquitylation	K228	-0.229		_KAEEDPEAADSGEPQNK(gl)R_
TOP1	Phosphorylation	S10	0.973	1.937	_(ac)SGDHLHNDS(ph)QIEADFR_
TOP1	Ubiquitylation	K245	2.277		_FYYDGK(gl)VMK_
TOP1	Ubiquitylation	K252		1.900	_LSPK(gl)AEEVATFFAK_
TOP1	Ubiquitylation	K391	0.019		_DAK(gl)VPSPPPGHK_
TOP1	Ubiquitylation	K545	2.178		_YYNKVPVEK(gl)R_
TOP1	Ubiquitylation	K642	2.317		_TFEK(gl)SMMNLQTK_
TOP2A	Phosphorylation	S4	-0.623	-0.424	_(ac)M(ox)EVS(ph)PLQPVNENM(ox)QVNK_
TOP2A	Ubiquitylation	K17	-0.250		_(ac)MEVSPLQPVNENMQVNK(gl)IKK_
TOP2A	Ubiquitylation	K96		0.284	_IFDEILVNAADNK(gl)QR_
TOP2A	Ubiquitylation	K131	0.553	-0.638	_GIPVVEHK(gl)VEK_
TOP2A	Ubiquitylation	K386	-2.203		_ENMTLQPK(gl)SFGSTCQLSEK_
TOP2A	Ubiquitylation	K397	0.214	0.360	_SFGSTCQLSEK(gl)FIK_
TOP2A	Ubiquitylation	K426		-0.502	_AQVQLNKK(gl)_
TOP2A	Ubiquitylation	K489	-0.029	0.171	_GK(gl)ILNVR_
TOP2A	Ubiquitylation	K520		-0.260	_IVGLQYKK(gl)_
TOP2A	Ubiquitylation	K529	0.862	0.065	_NYEDEDSLK(gl)TLR_
TOP2A	Ubiquitylation	K614		-0.287	_YYK(gl)GLGTSTSK_
TOP2A	Ubiquitylation	K622		-0.581	_GLGTSTSK(gl)EAK_
TOP2A	Ubiquitylation	K632	-0.171	-0.248	_EYFADMK(gl)R_
TOP2A	Ubiquitylation	K655	-0.091	-0.407	_YSGPEDDAAISLAFSK(gl)K_
TOP2A	Ubiquitylation	K656	-0.091	-0.441	_YSGPEDDAAISLAFSKK(gl)_
TOP2A	Ubiquitylation	K723		-1.207	_SIPSMVDGLK(gl)PGQR_
TOP2A	Ubiquitylation	K1088		0.061	_GYDSDPVK(gl)AWK_
TOP2A	Phosphorylation	S1142	0.072	0.040	_VPDEEENEES(ph)DNEKETEK_
TOP2A	Ubiquitylation	K1159	-0.411	-0.659	_EQELDTLK(gl)R_
TOP2A	Ubiquitylation	K1199	-0.674	-1.759	_EKQDEQVGLPGKGGK(gl)_
TOP2A	Phosphorylation	S1249	-0.907	-0.546	_TQMAEVLPS(ph)PR_
TOP2A	Phosphorylation	S1283	0.168	0.028	_NENTEGS(ph)PQEDGVELEGLK_
TOP2A	Phosphorylation	S1411	0.232	-0.105	_S(ph)VVSDLEADDVK_
TOP2A	Phosphorylation	S1414	0.884	0.877	_SVVS(ph)DLEADDVK_
TOP2A	Phosphorylation	S1429	-1.415	-2.977	_GSVPLSS(ph)SPPATHFPDETEITNPVPK_
TOP2A	Phosphorylation	S1430		-1.317	_GSVPLSSS(ph)PPATHFPDETEITNPVPK_
TOP2A	Phosphorylation	T1434	-1.348		_GSVPLSSSPPAT(ph)HFPDETEITNPVPK_
TOP2A	Phosphorylation	S1506		-0.384	_RKPS(ph)TSDDSDSNFEK_