RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
BRCA1	2	0.200	-0.140	0.433			0.018	0.146
GSK3B	2	1.020	-0.870				-1.128	1.091
PPP2R5D	1	-0.110	0.620
PPP2R5D	1	-0.110	0.620				-0.455	-0.019
DLGAP5	1	-2.380	4.820					-0.852
RAN	1			0.795	0.949	-0.688	0.566	0.288
TACC1	1	-0.060	-0.800
TACC3	0	1.030	-0.910
PRKACA	0	0.380	-0.680		-1.005	-0.697	0.234	0.487
AURKA	0	-0.450	-0.060				-2.905	-1.603
TPX2	0						-0.652	-0.369
TPX2	0				-0.850	0.408
BIRC5	0						-0.309	-0.536
CDC25B	0	-0.180	0.320
ARHGEF7	0	-0.410	-0.070
FZR1	0	0.740	-0.470
GIT1	0	0.720	-0.330				-1.751	0.439
GADD45A	0	1.050	-0.170
MDM2	0	-0.210	0.080
TP53	0	-1.070	1.050	-2.808	0.076	-0.094	0.436	0.497
AKT1	0	-0.050	0.700
AKT1	0	0.860	-0.040
PAK1	0	1.190	-0.630
NDEL1	0	0.150	-0.130
CKAP5	0			0.237	-1.027	-0.242	-0.255	-0.192
AURKAIP1	0	1.650	-1.420
AURKB	0	-0.840	1.170	-0.562			-0.744	-0.302
TDRD7	0	-0.390	1.130

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
AKT1	Phosphorylation	S124	0.252	0.311	_SGS(ph)PSDNSGAEEMEVSLAKPK_
AKT1	Phosphorylation	S126	-0.241		_SGSPS(ph)DNSGAEEM(ox)EVSLAK_
AKT1	Ubiquitylation	K301	0.988		_EGIK(gl)DGATMK_
ARHGEF7	Phosphorylation	S50	1.374	1.424	_IKS(ph)FDSLGSQSLHTR_
ARHGEF7	Phosphorylation	S154	-0.198	0.140	_SGTLKS(ph)PPK_
ARHGEF7	Phosphorylation	S415	0.662	0.947	_M(ox)S(ph)GFIYQGK_
ARHGEF7	Phosphorylation	S600		0.797	_S(ph)TAALEEDAQILK_
ARHGEF7	Phosphorylation	T601		0.797	_S(ph)TAALEEDAQILK_
ARHGEF7	Phosphorylation	S635	0.061	-0.203	_KES(ph)APQVLLPEEEKIIVEETK_
AURKAIP1	Ubiquitylation	K183		-0.748	_AGLK(gl)EAPEGWQTPK_
AURKB	Ubiquitylation	K56	-2.018	-2.920	_SNVQPTAAPGQK(gl)VMENSSGTPDILTR_
AURKB	Ubiquitylation	K87	-0.700	-1.401	_GK(gl)FGNVYLAR_
AURKB	Ubiquitylation	K164		-1.041	_GELYK(gl)ELQK_
AURKB	Ubiquitylation	K168	-0.421	-1.027	_ELQK(gl)SCTFDEQR_
AURKB	Ubiquitylation	K287		-0.625	_IVK(gl)VDLK_
BIRC5	Ubiquitylation	K15		-1.446	_(ac)GAPTLPPAWQPFLK(gl)DHR_
BIRC5	Ubiquitylation	K113	0.088	-0.061	_HSSGCAFLSVK(gl)K_
BIRC5	Ubiquitylation	K114		-0.061	_HSSGCAFLSVK(gl)K_
BRCA1	Phosphorylation	S123	0.465	0.445	_KENNSPEHLKDEVS(ph)IIQSM(ox)GYR_
BRCA1	Phosphorylation	S753	2.662	4.077	_VSNNAEDPKDLMLS(ph)GER_
BRCA1	Phosphorylation	S1009	0.733	1.028	_KNLLEENFEEHSM(ox)S(ph)PER_
BRCA1	Phosphorylation	S1546	1.821	2.105	_NYPS(ph)QEELIK_
BRCA1	Phosphorylation	S1564		3.065	_VVDVEEQQLEES(ph)GPHDLTETSYLPR_
BRCA1	Phosphorylation	S1664		1.120	_EKPELTAS(ph)TER_
CDC25B	Phosphorylation	S117		-0.601	_EAFAQRPS(ph)SAPDLMCLSPDR_
CDC25B	Phosphorylation	S118		-0.832	_EAFAQRPS(ph)SAPDLMCLSPDR_
CDC25B	Phosphorylation	S241	-2.288	-1.005	_S(ph)VTPPEEQQEAEEPK_
CDC25B	Phosphorylation	T243	-1.445		_SVT(ph)PPEEQQEAEEPK_
CDC25B	Phosphorylation	S261		0.275	_S(ph)KSLCHDEIENLLDSDHR_
CDC25B	Phosphorylation	S263		0.184	_SKS(ph)LCHDEIENLLDSDHR_
CKAP5	Ubiquitylation	K1075	1.056		_DQVLAMLEK(gl)AK_
CKAP5	Ubiquitylation	K1077	1.056		_DQVLAMLEK(gl)AK_
DLGAP5	Phosphorylation	T661		-0.604	_NEMGIPQQTT(ph)SPENAGPQNTK_
DLGAP5	Phosphorylation	S662	-1.032	-0.577	_NEMGIPQQTTS(ph)PENAGPQNTK_
DLGAP5	Phosphorylation	S689	-0.077	-0.102	_S(ph)SIEDAQCPGLPDLIEENHVVNK_
DLGAP5	Phosphorylation	S690	-0.077	-0.395	_S(ph)SIEDAQCPGLPDLIEENHVVNK_
DLGAP5	Phosphorylation	S774		1.237	_NTAS(ph)QNSILEEGETK_
DLGAP5	Phosphorylation	S806		0.216	_SLTTECHLLDS(ph)PGLNCSNPFTQLER_
FZR1	Ubiquitylation	K135		-0.177	_GLFTYSLSTK(gl)R_
FZR1	Ubiquitylation	K263		0.187	_GFVQIWDAAAGKK(gl)_
GADD45A	Ubiquitylation	K12	-0.515	0.281	_TLEEFSAGEQK(gl)TER_
GADD45A	Ubiquitylation	K29		0.092	_VGDALEEVLSK(gl)ALSQR_
GIT1	Phosphorylation	S374	1.018	1.475	_SLS(ph)SPTDNLELSLR_
GIT1	Phosphorylation	S375	0.909	1.262	_SLSS(ph)PTDNLELSLR_
GIT1	Phosphorylation	S401	0.624	0.935	_SQSDLDDQHDYDSVAS(ph)DEDTDQEPLR_
GIT1	Phosphorylation	S423	0.332	0.924	_ARS(ph)MDSSDLSDGAVTLQEYLELKK_
GIT1	Phosphorylation	S605	0.173	0.037	_HGS(ph)GADSDYENTQSGDPLLGLEGK_
GSK3B	Phosphorylation	S9	-0.483	0.010	_TTS(ph)FAESCKPVQQPSAFGSMK_
GSK3B	Ubiquitylation	K85		-0.204	_LCDSGELVAIK(gl)K_
GSK3B	Ubiquitylation	K86		-0.204	_LCDSGELVAIK(gl)K_
GSK3B	Phosphorylation	S215	0.296	0.477	_GEPNVS(ph)YICSR_
GSK3B	Phosphorylation	Y216	0.356	0.376	_GEPNVSY(ph)ICSR_
GSK3B	Phosphorylation	T390	2.800	2.527	_IQAAAST(ph)PTNATAASDANTGDR_
MDM2	Phosphorylation	S166	0.576	1.068	_AIS(ph)ETEENSDELSGER_
MDM2	Ubiquitylation	K334		-0.872	_ENWLPEDK(gl)GK_
MDM2	Ubiquitylation	K336		-0.872	_ENWLPEDK(gl)GK_
MDM2	Ubiquitylation	K363		0.883	_LENSTQAEEGFDVPDCK(gl)K_
MDM2	Ubiquitylation	K364		0.883	_LENSTQAEEGFDVPDCK(gl)K_
MDM2	Ubiquitylation	K473		0.806	_NK(gl)PCPVCR_
NDEL1	Phosphorylation	S249		-0.120	_S(ph)APSS(ph)PTLDCEK_
NDEL1	Phosphorylation	S253		-0.120	_S(ph)APSS(ph)PTLDCEK_
PAK1	Phosphorylation	S174	-1.439	-0.597	_AVSETPAVPPVS(ph)EDEDDDDDDATPPPVIAPRPEHTK_
PAK1	Phosphorylation	T212		0.312	_SVIEPLPVT(ph)PTR_
PAK1	Phosphorylation	T219	-0.560	-0.962	_DVAT(ph)SPISPTENNTT(ph)PPDALTR_
PAK1	Phosphorylation	S220	-0.916	-0.774	_DVATS(ph)PISPTENNTTPPDALTR_
PAK1	Phosphorylation	S223	1.033	0.153	_DVATSPIS(ph)PTENNTTPPDALTR_
PAK1	Phosphorylation	T225	-1.278		_DVATSPISPT(ph)ENNTTPPDALTR_
PAK1	Phosphorylation	T230	-1.418	-1.502	_DVATSPISPTENNTT(ph)PPDALTR_
PPP2R5D	Phosphorylation	T63		-1.449	_RPSNST(ph)PPPTQLSK_
PPP2R5D	Ubiquitylation	K232	-0.302		_FLESPDFQPNIAK(gl)K_
PPP2R5D	Ubiquitylation	K233	-0.302	0.665	_FLESPDFQPNIAKK(gl)_
PPP2R5D	Ubiquitylation	K409		-0.010	_QLAK(gl)CVSSPHFQVAER_
PPP2R5D	Phosphorylation	S573	0.524	0.357	_RKS(ph)ELPQDVYTIK_
PPP2R5D	Phosphorylation	S598	-0.317	1.858	_RAEEFLTAS(ph)QEAL_
PRKACA	Ubiquitylation	K30	-0.143		_AKEDFLKK(gl)_
PRKACA	Ubiquitylation	K93	0.839	0.714	_QIEHTLNEK(gl)R_
RAN	Ubiquitylation	K23	0.056		_LVLVGDGGTGK(gl)TTFVK_
RAN	Ubiquitylation	K37	0.841		_HLTGEFEK(gl)K_
RAN	Ubiquitylation	K60	-0.488	0.477	_GPIK(gl)FNVWDTAGQEK_
RAN	Ubiquitylation	K71	1.279		_FNVWDTAGQEK(gl)FGGLR_
RAN	Ubiquitylation	K116	-0.044	1.823	_VTYK(gl)NVPNWHR_
RAN	Ubiquitylation	K140	-0.020	0.586	_VCENIPIVLCGNK(gl)VDIK_
RAN	Ubiquitylation	K144	0.131	0.529	_VCENIPIVLCGNKVDIK(gl)DR_
RAN	Ubiquitylation	K147	0.000		_VCENIPIVLCGNKVDIKDRK(gl)_
RAN	Ubiquitylation	K151	1.342	0.712	_AK(gl)SIVFHR_
RAN	Ubiquitylation	K158	0.185	0.370	_K(gl)KNLQYYDISAK_
RAN	Ubiquitylation	K159	0.246	0.274	_K(gl)NLQYYDISAK_
RAN	Ubiquitylation	K176		1.593	_SNYNFEK(gl)PFLWLAR_
TACC1	Phosphorylation	S44	-0.293	-0.032	_GGAAGEDEAGGPEGDPEEEDS(ph)QAETK_
TACC1	Phosphorylation	S91	0.291	1.551	_S(ph)QESQEADEQLVAEVVEK_
TACC1	Phosphorylation	S94		1.530	_SQES(ph)QEADEQLVAEVVEK_
TACC3	Phosphorylation	S25	-0.993	-0.186	_NTENCDFLFS(ph)PPEVTGR_
TACC3	Phosphorylation	T59		-2.436	_VTFQT(ph)PLRDPQTHR_
TACC3	Phosphorylation	S71	0.876	1.139	_ILS(ph)PSMASK_
TACC3	Phosphorylation	S175	0.134	0.059	_VS(ph)GSPEQAVEENLSSYSLDR_
TACC3	Phosphorylation	S177	0.248	0.430	_VSGS(ph)PEQAVEENLSSYSLDRR_
TACC3	Phosphorylation	T228		0.779	_AETPHGAEEECKAET(ph)PHGAEEECR_
TACC3	Phosphorylation	T249	-0.679	-0.649	_HGGVCAPAAVAT(ph)SPPGAIPK_
TACC3	Phosphorylation	S250	-0.740	-0.589	_HGGVCAPAAVATS(ph)PPGAIPK_
TACC3	Phosphorylation	T315	1.424		_AM(ox)T(ph)LSPQEEVAAGQMASSSR_
TACC3	Phosphorylation	S317	1.040	1.242	_AM(ox)TLS(ph)PQEEVAAGQM(ox)ASSSR_
TACC3	Phosphorylation	S434	0.179	0.184	_SGCSEAQPPES(ph)PETR_
TACC3	Ubiquitylation	K649		-0.831	_DLDAVVK(gl)ATQEENR_
TACC3	Ubiquitylation	K819	0.067		_TK(gl)ENEELTR_
TDRD7	Ubiquitylation	K576	0.029	1.028	_FCSLSFQATK(gl)CK_
TP53	Ubiquitylation	K120	-0.188		_LGFLHSGTAK(gl)SVTCTYSPALNK_
TP53	Ubiquitylation	K164	0.157	-1.260	_AMAIYK(gl)QSQHMTEVVR_
TP53	Phosphorylation	S314	-0.695	-1.000	_ALPNNTSS(ph)SPQPK_
TP53	Phosphorylation	S315	-0.762	-0.959	_RALPNNTSSS(ph)PQPK_
TP53	Ubiquitylation	K320	-0.978		_ALPNNTSSSPQPKK(gl)_
TP53	Ubiquitylation	K357	-0.231	-0.823	_ELNEALELKDAQAGK(gl)EPGGSR_
TPX2	Phosphorylation	T72		-1.259	_ANLQQAIVT(ph)PLKPVDNTYYK_
TPX2	Phosphorylation	T405		-2.166	_DPQT(ph)PVLQTK_
TPX2	Ubiquitylation	K640	-0.320	0.644	_GALK(gl)AQTWK_
TPX2	Ubiquitylation	K763	-0.340		_YQGLEIK(gl)SSDQPLTVPVSPK_
TPX2	Phosphorylation	T770		-1.331	_SSDQPLT(ph)VPVSPK_
TPX2	Phosphorylation	S774	-1.173	-0.922	_SSDQPLTVPVS(ph)PK_