RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
GSK3A	2	-1.420	1.510				-1.128	1.091
GSK3A	2	-1.420	1.510
ACADVL	1	-2.840	5.470		-0.231	-0.461	0.539	0.664
TLN1	1	-0.130	0.000	0.807			0.246	0.137
ATP6V0D1	1	-0.960	0.640
ATP6V0D1	1	-0.960	0.640	-0.252			-0.493	2.836
LMNA	1	0.760	-0.400	1.025	-0.121	0.091	1.281	0.818
DDX11	0	-0.980	0.900
CUL7	0	1.580	-1.240	-1.778	-0.501	-0.333	-0.058	0.103
PDIA5	0	-1.000	1.120				0.907	0.753
ADD1	0	0.440	0.020		-0.881	-0.757	1.191	-0.072
DNAJB11	0	1.090	-0.570
DNAJB11	0	1.090	-0.570	-0.681	-0.327	0.470	-0.206	-0.384
XBP1	0	0.460	0.310
ARFGAP1	0	0.210	-0.220
ARFGAP1	0	0.210	-0.220
ARFGAP1	0	0.210	-0.220
DNAJC3	0	0.690	-0.440				-0.823
GOSR2	0	-0.380	0.660
GOSR2	0	-0.380	0.660				1.115	0.357
WFS1	0	-0.390	0.420				-0.793	-0.234
ZBTB17	0	0.670	-0.540
SSR1	0	-0.220	-0.180
SSR1	0	-0.220	-0.180				0.456	0.400
PREB	0	0.820	-0.890				-0.364	-0.232
SEC31A	0	1.690	-1.010	-0.161			-0.171	0.128
HDGF	0	-0.810	0.160
HDGF	0	-0.810	0.160
PDIA6	0	1.060	-0.820	0.663	1.438	-1.234	0.073	0.167
SRPRB	0	0.920	-0.400	-0.155			-0.328	0.005
CXXC1	0	-0.510	0.300	0.959	0.654			-0.921
TATDN2	0	-0.470	0.600
SYVN1	0	0.580	-0.030
TPP1	0	-0.540	0.760	0.431			1.429	1.399
YIF1A	0	0.970	-0.560				-1.860
SRPR	0			-1.161		-0.324	0.122	0.360
DCTN1	0	1.450	-0.750	0.127
DCTN1	0	1.450	-0.750		-0.378	-2.511	0.436	0.352
SULT1A4	0
SULT1A3	0

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ADD1	Phosphorylation	T11	-0.730	-0.576	_AAVVT(ph)SPPPTTAPHK_
ADD1	Phosphorylation	S12	-1.409	-0.665	_AAVVTS(ph)PPPTTAPHK_
ADD1	Phosphorylation	S64		0.260	_RVSMILQS(ph)PAFCEELESMIQEQFK_
ADD1	Ubiquitylation	K140		0.386	_GSDSIAYDK(gl)GEK_
ADD1	Ubiquitylation	K143	0.288	0.386	_GSDSIAYDKGEK(gl)_
ADD1	Phosphorylation	S353	-0.425	-0.286	_S(ph)RSPGSPVGEGTGSPPK_
ADD1	Phosphorylation	S355	-0.007	-0.345	_SRS(ph)PGSPVGEGTGSPPK_
ADD1	Phosphorylation	S358	-0.346	-0.241	_SPGS(ph)PVGEGTGSPPK_
ADD1	Phosphorylation	S366		-1.004	_SPGSPVGEGTGS(ph)PPKWQIGEQEFEALMR_
ADD1	Phosphorylation	T429	-0.303		_YSDVEVPASVTGYSFASDGDSGT(ph)CSPLR_
ADD1	Phosphorylation	S431	-0.176	-0.145	_KYSDVEVPASVTGYSFASDGDSGTCS(ph)PLR_
ADD1	Phosphorylation	S436	0.937	0.639	_KYSDVEVPASVTGYSFASDGDSGTCSPLRHS(ph)FQK_
ADD1	Phosphorylation	S483	-0.425	-1.128	_TSTS(ph)AVPNLFVPLNTNPK_
ADD1	Phosphorylation	S586	-0.125	1.117	_QKGS(ph)EENLDEAR_
ADD1	Phosphorylation	S726	0.518	0.668	_TPS(ph)FLKK_
ARFGAP1	Phosphorylation	S37	0.390	0.076	_VS(ph)GQPQSVTASSDK_
ARFGAP1	Ubiquitylation	K74	0.390	0.746	_DIELEK(gl)MK_
ARFGAP1	Phosphorylation	S144	-0.169	-0.150	_TLPS(ph)M(ox)VHRVSGQPQSVTASSDK_
ARFGAP1	Phosphorylation	S150	0.394	0.096	_VS(ph)GQPQSVTASSDK_
ARFGAP1	Ubiquitylation	K226	-0.373		_FASAAK(gl)EGATK_
ARFGAP1	Ubiquitylation	K231		-0.415	_EGATK(gl)FGSQASQK_
ARFGAP1	Phosphorylation	S343	0.527	0.767	_S(ph)PSSDSWTCADTSTER_
ATP6V0D1	Ubiquitylation	K384	0.065	-0.172	_AK(gl)IDNYIPIF_
CUL7	Ubiquitylation	K651	1.265	0.880	_DLINCHVYKK(gl)_
DCTN1	Ubiquitylation	K618	0.526	0.373	_LICK(gl)AELIR_
DDX11	Ubiquitylation	K173	0.779	-0.864	_VQLK(gl)YAAK_
DDX11	Ubiquitylation	K520		-0.747	_YCEK(gl)SMISR_
DDX11	Ubiquitylation	K830		-1.499	_SAELQEK(gl)MAYLDQTLPR_
DNAJB11	Ubiquitylation	K43	-0.110		_SASIKDIKK(gl)_
DNAJB11	Ubiquitylation	K54	-1.500		_LQELEEFK(gl)ER_
DNAJB11	Ubiquitylation	K302	-0.968	-0.252	_K(gl)GEGLPNFDNNNIK_
GOSR2	Ubiquitylation	K159	-0.182	0.653	_LTLK(gl)GTQK_
GSK3A	Phosphorylation	S9	-0.483	0.010	_TTS(ph)FAESCKPVQQPSAFGSMK_
GSK3A	Phosphorylation	S21		-0.406	_TSS(ph)FAEPGGGGGGGGGGPGGSASGPGGTGGGK_
GSK3A	Ubiquitylation	K85		-0.204	_LCDSGELVAIK(gl)K_
GSK3A	Ubiquitylation	K86		-0.204	_LCDSGELVAIK(gl)K_
GSK3A	Ubiquitylation	K148		0.396	_ELVAIK(gl)K_
GSK3A	Phosphorylation	S215	0.296	0.477	_GEPNVS(ph)YICSR_
GSK3A	Phosphorylation	Y216	0.356	0.376	_GEPNVSY(ph)ICSR_
GSK3A	Phosphorylation	T390	2.800	2.527	_IQAAAST(ph)PTNATAASDANTGDR_
HDGF	Ubiquitylation	K11	0.744		_EYK(gl)CGDLVFAK_
HDGF	Ubiquitylation	K39	0.518		_IDEMPEAAVK(gl)STANK_
HDGF	Phosphorylation	S148	0.175	0.116	_KGNAEGS(ph)SDEEGKLVIDEPAK_
HDGF	Phosphorylation	S149	0.156	-0.009	_GNAEGSS(ph)DEEGKLVIDEPAKEK_
HDGF	Phosphorylation	S181	0.232	0.201	_RAGDLLEDS(ph)PK_
LMNA	Phosphorylation	T19		-1.262	_SGAQASST(ph)PLS(ph)PTR_
LMNA	Phosphorylation	S22	-0.433	0.377	_SGAQASST(ph)PLS(ph)PTR_
LMNA	Ubiquitylation	K32	0.054		_LQEK(gl)EDLQELNDR_
LMNA	Ubiquitylation	K78	-0.306		_EVSGIK(gl)AAYEAELGDAR_
LMNA	Ubiquitylation	K97	0.499	-0.167	_TLDSVAK(gl)ER_
LMNA	Ubiquitylation	K108	0.586		_LQLELSK(gl)VR_
LMNA	Ubiquitylation	K114	0.753		_VREEFK(gl)ELK_
LMNA	Ubiquitylation	K117	0.571		_VREEFKELK(gl)AR_
LMNA	Ubiquitylation	K122	0.401		_NTK(gl)KEGDLIAAQAR_
LMNA	Ubiquitylation	K123	0.401		_NTK(gl)KEGDLIAAQAR_
LMNA	Ubiquitylation	K135	0.856	1.129	_LK(gl)DLEALLNSK_
LMNA	Ubiquitylation	K155	-0.218	0.375	_EAALSTALSEK(gl)R_
LMNA	Ubiquitylation	K171	0.656	0.450	_GQVAK(gl)LEAALGEAKK_
LMNA	Ubiquitylation	K180	0.977	0.753	_LEAALGEAK(gl)K_
LMNA	Ubiquitylation	K181	0.458	0.679	_K(gl)QLQDEMLR_
LMNA	Ubiquitylation	K219	0.784	0.456	_NIYSEELRETK(gl)R_
LMNA	Ubiquitylation	K233	0.194	1.930	_LVEIDNGK(gl)QREFESR_
LMNA	Ubiquitylation	K261	0.576		_AQHEDQVEQYKK(gl)ELEK_
LMNA	Ubiquitylation	K265	0.532	0.714	_ELEK(gl)TYSAK_
LMNA	Ubiquitylation	K270	0.362	0.777	_TYSAK(gl)LDNAR_
LMNA	Ubiquitylation	K311	0.853	0.977	_IDSLSAQLSQLQK(gl)QLAAK_
LMNA	Ubiquitylation	K378	-0.030	0.701	_K(gl)LLEGEEER_
LMNA	Phosphorylation	S390	-0.020	-0.112	_LRLS(ph)PSPTSQR_
LMNA	Phosphorylation	S392	-0.062	-0.026	_LSPS(ph)PTSQR_
LMNA	Phosphorylation	S403		0.641	_GRAS(ph)SHSSQTQGGGSVTK_
LMNA	Phosphorylation	S458		0.520	_NKS(ph)NEDQSMGNWQIK_
LMNA	Phosphorylation	S632	0.730		_SVGGS(ph)GGGSFGDNLVTR_
LMNA	Phosphorylation	S636	0.537	1.498	_SVGGSGGGS(ph)FGDNLVTR_
PDIA6	Ubiquitylation	K289		0.793	_GFPTIK(gl)IFQK_
PDIA6	Phosphorylation	S476	-0.194	0.149	_EPWDGRDGELPVEDDIDLS(ph)DVELDDLGKDEL_
PREB	Ubiquitylation	K218		-0.621	_DLK(gl)ASVWQK_
PREB	Ubiquitylation	K272		-1.012	_LFTVQIPHK(gl)R_
SEC31A	Ubiquitylation	K460	0.843	1.346	_SDQLQQAVQSQGFINYCQK(gl)K_
SEC31A	Ubiquitylation	K461	0.843	1.346	_SDQLQQAVQSQGFINYCQK(gl)K_
SEC31A	Phosphorylation	S527	-0.287	0.538	_DSDQVAQS(ph)DGEESPAAEEQLLGEHIK_
SEC31A	Phosphorylation	S799	-0.417	-0.388	_AQGEPVAGHES(ph)PKIPYEK_
SEC31A	Ubiquitylation	K806	-0.016	0.221	_IPYEK(gl)QQLPK_
SEC31A	Ubiquitylation	K1171	-0.024	-0.507	_CLSSATDPQTK(gl)R_
SEC31A	Phosphorylation	T1192	0.363	-1.264	_EQT(ph)LSPTITSGLHNIAR_
SEC31A	Phosphorylation	S1194	0.316	0.198	_EQTLS(ph)PTITSGLHNIAR_
SEC31A	Ubiquitylation	K1248	0.394	0.332	_VVLTQANK(gl)LGV_
SRPR	Ubiquitylation	K129		-0.460	_EAEESSK(gl)IR_
SRPRB	Ubiquitylation	K191	-0.160	0.940	_SAK(gl)LIQQQLEK_
SRPRB	Phosphorylation	T214	0.004	0.792	_SAAPST(ph)LDSSSTAPAQLGK_
SRPRB	Ubiquitylation	K227		0.280	_SAAPSTLDSSSTAPAQLGK(gl)K_
SRPRB	Ubiquitylation	K228	-1.460	0.280	_SAAPSTLDSSSTAPAQLGKK(gl)_
SSR1	Phosphorylation	S268	-0.607	-0.604	_VEM(ox)GTSSQNDVDMSWIPQETLNQINKAS(ph)PR_
SULT1A3	Ubiquitylation	K16	-1.153		_(ac)MELIQDTSRPPLEYVK(gl)GVPLIK_
SULT1A3	Ubiquitylation	K124	1.250		_VK(gl)VVYVAR_
SULT1A4	Ubiquitylation	K16	-1.153		_(ac)MELIQDTSRPPLEYVK(gl)GVPLIK_
SULT1A4	Ubiquitylation	K124	1.250		_VK(gl)VVYVAR_
SYVN1	Ubiquitylation	K303		0.772	_EEMVTGAK(gl)R_
TATDN2	Ubiquitylation	K651		-0.559	_FVPPDYK(gl)IHR_
TLN1	Ubiquitylation	K334	-0.489	0.561	_LLGITK(gl)ECVM(ox)R_
TLN1	Phosphorylation	S423		0.105	_DHFGLEGDEESTMLEDS(ph)VSPKK_
TLN1	Phosphorylation	S425	-0.366	-0.322	_DHFGLEGDEESTMLEDSVS(ph)PKK_
TLN1	Ubiquitylation	K869	-0.260		_ILADATAK(gl)MVEAAK_
TLN1	Ubiquitylation	K1541	0.365	2.311	_EVANSTANLVK(gl)TIK_
TLN1	Ubiquitylation	K2021	0.309	0.479	_EGILK(gl)TAK_
WFS1	Phosphorylation	S32	1.184	1.098	_LNATAS(ph)LEQER_
WFS1	Ubiquitylation	K143		0.703	_EAVK(gl)LLR_
XBP1	Phosphorylation	S47		-0.358	_GAS(ph)PEAASGGLPQAR_
YIF1A	Ubiquitylation	K92		0.264	_FVSVSKLK(gl)_
ZBTB17	Phosphorylation	T119	-0.130	-0.375	_SLAEPAT(ph)SPGGNAEALATEGGDK_
ZBTB17	Phosphorylation	S120	-0.091	-0.316	_SLAEPATS(ph)PGGNAEALATEGGDK_