RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
W

Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
DDX20	2	-1.700	3.260		-0.911		-0.594	-0.404
DDX20	2	-1.700	3.260	-1.460
DDX3Y	2	-1.430	2.020	0.081	-0.794	-0.166	-0.062	-0.025
DDX17	2	0.430	0.190
DDX17	2	0.430	0.190	-0.510	-0.742	-0.115	0.045	0.000
EIF4A3	2	-1.590	2.620	0.070	0.033	0.220	-0.539	-0.195
DDX4	2	0.190	0.190	0.081	-0.794	-0.166	-0.062	-0.025
DDX3X	2	-0.250	0.370	0.081	-0.794	-0.166	-0.062	-0.025
DDX24	1	0.340	-0.800		-0.257	-0.208		-0.419
DDX59	1	-1.180	1.970
DDX54	1	-0.350	-0.090				-0.557	-0.158
DDX27	1	-0.470	0.700		2.094		-0.775	0.095
EIF4A2	1	0.070	0.140		0.605	-1.090	0.048	0.029
EIF4A2	1	0.070	0.140	0.070	0.033	0.220	-0.539	-0.195
EIF4A2	1	0.070	0.140				-0.007	-0.156
DDX23	1	0.090	-0.140
DDX23	1	0.090	-0.140	0.001	-0.214	0.377	0.541	0.355
DDX1	0	-0.100	0.160	-0.034	-0.036	0.487	-0.133	0.258
DDX5	0	-1.650	2.390
DDX49	0	0.020	-0.380	-0.429			-1.124	-0.334
DDX55	0	0.430	-0.010				-1.354	-0.312
DDX39A	0	-0.780	0.900
DDX39A	0	-0.780	0.900	0.154	-0.871	-0.414	-0.071	0.085
DDX31	0	-0.280	0.810				-0.271	0.157
DDX56	0	-0.910	1.570		0.130	0.609
DDX56	0	-0.910	1.570				-2.839	-0.826
DDX46	0	0.020	-0.760	0.220	0.222	-0.279	-0.224	-0.110
DDX46	0	0.020	-0.760				0.189	0.029
DDX19A	0	-0.810	0.840	-0.436			-0.101	0.165
DDX19B	0	-0.580	0.490	-2.030
DDX19B	0	-0.580	0.490	-0.436			-0.101	0.165
EIF4A1	0	1.010	-0.810		0.605	-1.090	0.048	0.029
EIF4A1	0	1.010	-0.810	0.248
DDX10	0	0.260	0.420		-0.605		-0.219	-0.001
DDX28	0	0.800	-0.930				-0.987	-0.123
DDX41	0	-0.480	0.420		-0.511	0.271
DDX41	0	-0.480	0.420	-0.358			-0.293	0.363
DDX42	0	-1.180	1.640	0.239	-0.028	-0.479	-0.132	0.059
DDX47	0	-0.690	0.360	-1.395		-0.368	-0.261	-0.050

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
DDX1	Ubiquitylation	K82		-0.137	_TTIK(gl)TGASVLNK_
DDX1	Ubiquitylation	K117	1.370		_EVK(gl)EWHGCR_
DDX1	Ubiquitylation	K173	1.499		_FGFGFGGTGKK(gl)_
DDX1	Ubiquitylation	K260	-0.585		_DGFVALSK(gl)APDGYIVK_
DDX1	Ubiquitylation	K281	0.294		_SQHSGNAQVTQTK(gl)FLPNAPK_
DDX1	Ubiquitylation	K358	1.293		_LDDLVSTGK(gl)LNLSQVR_
DDX1	Phosphorylation	S481	0.023	0.050	_DNTRPGANS(ph)PEMWSEAIK_
DDX10	Phosphorylation	S7	0.278	-0.138	_TANS(ph)PGSGARPDPVR_
DDX10	Phosphorylation	S539		1.038	_APS(ph)LTNDEVEEFR_
DDX17	Phosphorylation	T57		-3.266	_ESAAPAAAPTAEAPPPSVVT(ph)RPEPQALPSPAIR_
DDX17	Phosphorylation	S66	-1.474	-2.596	_ESAAPAAAPTAEAPPPSVVTRPEPQALPS(ph)PAIR_
DDX17	Ubiquitylation	K197	-0.288	0.192	_LK(gl)STCIYGGAPK_
DDX17	Ubiquitylation	K207	-0.829	0.102	_STCIYGGAPK(gl)GPQIR_
DDX17	Ubiquitylation	K264		-1.652	_K(gl)IVDQIRPDR_
DDX17	Ubiquitylation	K271	-0.079	0.464	_ELAQQVQQVADDYGK(gl)CSR_
DDX17	Ubiquitylation	K517	-0.580	0.187	_STNK(gl)GTAYTFFTPGNLK_
DDX17	Ubiquitylation	K530	-0.050	0.759	_GTAYTFFTPGNLK(gl)QAR_
DDX17	Phosphorylation	S675	1.927	1.128	_S(ph)SQSSSQQFSGIGR_
DDX17	Phosphorylation	S680	1.413	3.083	_SSQSSS(ph)QQFSGIGR_
DDX20	Phosphorylation	S268		1.509	_LNS(ph)SDPSLIGLK_
DDX20	Ubiquitylation	K356	0.817	-0.217	_LDAMAKLK(gl)_
DDX20	Phosphorylation	T531	0.063	0.240	_AT(ph)SPKELGCDR_
DDX20	Phosphorylation	S532	-1.143	-0.447	_ATS(ph)PKELGCDR_
DDX20	Phosphorylation	S714	-0.225	0.002	_YQES(ph)PGIQM(ox)K_
DDX20	Ubiquitylation	K720		-1.179	_YQESPGIQMK(gl)TR_
DDX23	Ubiquitylation	K259	1.705	1.364	_YLGGIK(gl)K_
DDX23	Ubiquitylation	K260	1.705	1.364	_YLGGIK(gl)K_
DDX23	Ubiquitylation	K326	-0.482		_FYGDLMEK(gl)R_
DDX24	Ubiquitylation	K71	-0.410		_NPSSLFSK(gl)EAPK_
DDX24	Phosphorylation	S82	0.728	0.909	_AQAVS(ph)EEEEEEEGKSSSPK_
DDX24	Phosphorylation	S93	-0.748	-0.438	_AQAVSEEEEEEEGKSS(ph)SPKK_
DDX24	Phosphorylation	S94	-0.776	-0.353	_AQAVSEEEEEEEGKSSS(ph)PKK_
DDX24	Phosphorylation	S287		-0.643	_S(ph)PGKAEAESDALPDDTVIESEALPSDIAAEAR_
DDX24	Phosphorylation	S295	-1.143	-0.713	_SPGKAEAES(ph)DALPDDTVIESEALPSDIAAEAR_
DDX24	Phosphorylation	T302	-0.864		_SPGKAEAESDALPDDT(ph)VIESEALPSDIAAEAR_
DDX24	Ubiquitylation	K737	1.002	1.625	_QIEK(gl)SEYR_
DDX39A	Phosphorylation	Y56	-1.836	-1.799	_AEQDVENDLLDY(ph)DEEEEPQAPQESTPAPPK_
DDX39A	Phosphorylation	S68	-0.291	-0.639	_(ac)AEQDVENDLLDYDEEEEPQAPQES(ph)TPAPPKK_
DDX39A	Phosphorylation	T69		-0.639	_(ac)AEQDVENDLLDYDEEEEPQAPQES(ph)TPAPPKK_
DDX39A	Ubiquitylation	K78	0.624		_DIK(gl)GSYVSIHSSGFR_
DDX39A	Ubiquitylation	K205	-0.507		_K(gl)NCPHVVVGTPGR_
DDX39A	Phosphorylation	T214	0.055	-0.353	_NCPHVVVGT(ph)PGR_
DDX39A	Phosphorylation	S226	1.288	0.791	_NRS(ph)FSLK_
DDX39A	Ubiquitylation	K230	0.720	0.666	_SFSLK(gl)NVK_
DDX3X	Ubiquitylation	K78	1.311		_DK(gl)DAYSSFGSR_
DDX3X	Ubiquitylation	K93	0.657	1.846	_GK(gl)SSFFSDR_
DDX3X	Phosphorylation	S94	0.172		_S(ph)SFFSDRGSGSR_
DDX3X	Phosphorylation	S102	0.008	0.230	_SSFFSDRGS(ph)GSR_
DDX3X	Phosphorylation	S104	-0.231	0.320	_SSFFSDRGSGS(ph)R_
DDX3X	Ubiquitylation	K130	1.572	1.502	_SGFGK(gl)FER_
DDX3X	Ubiquitylation	K347	-0.406	0.360	_GK(gl)IGLDFCK_
DDX3X	Ubiquitylation	K503	-0.796		_SGK(gl)SPILVATAVAAR_
DDX3X	Phosphorylation	S602		-0.349	_S(ph)SRFSGGFGAR_
DDX3X	Phosphorylation	S603		-0.330	_SS(ph)RFSGGFGAR_
DDX3X	Phosphorylation	S606	-0.248	-0.447	_FS(ph)GGFGAR_
DDX3Y	Ubiquitylation	K78	1.311		_DK(gl)DAYSSFGSR_
DDX3Y	Ubiquitylation	K93	0.657	1.846	_GK(gl)SSFFSDR_
DDX3Y	Phosphorylation	S94	0.172		_S(ph)SFFSDRGSGSR_
DDX3Y	Phosphorylation	S102	0.008	0.230	_SSFFSDRGS(ph)GSR_
DDX3Y	Phosphorylation	S104	-0.231	0.320	_SSFFSDRGSGS(ph)R_
DDX3Y	Ubiquitylation	K130	1.572	1.502	_SGFGK(gl)FER_
DDX3Y	Ubiquitylation	K347	-0.406	0.360	_GK(gl)IGLDFCK_
DDX3Y	Ubiquitylation	K503	-0.796		_SGK(gl)SPILVATAVAAR_
DDX3Y	Phosphorylation	S602		-0.349	_S(ph)SRFSGGFGAR_
DDX3Y	Phosphorylation	S603		-0.330	_SS(ph)RFSGGFGAR_
DDX3Y	Phosphorylation	S606	-0.248	-0.447	_FS(ph)GGFGAR_
DDX4	Ubiquitylation	K78	1.311		_DK(gl)DAYSSFGSR_
DDX4	Ubiquitylation	K93	0.657	1.846	_GK(gl)SSFFSDR_
DDX4	Phosphorylation	S94	0.172		_S(ph)SFFSDRGSGSR_
DDX4	Phosphorylation	S102	0.008	0.230	_SSFFSDRGS(ph)GSR_
DDX4	Phosphorylation	S104	-0.231	0.320	_SSFFSDRGSGS(ph)R_
DDX4	Ubiquitylation	K130	1.572	1.502	_SGFGK(gl)FER_
DDX4	Ubiquitylation	K347	-0.406	0.360	_GK(gl)IGLDFCK_
DDX4	Ubiquitylation	K503	-0.796		_SGK(gl)SPILVATAVAAR_
DDX4	Phosphorylation	S602		-0.349	_S(ph)SRFSGGFGAR_
DDX4	Phosphorylation	S603		-0.330	_SS(ph)RFSGGFGAR_
DDX4	Phosphorylation	S606	-0.248	-0.447	_FS(ph)GGFGAR_
DDX41	Phosphorylation	S21	-0.756	-0.696	_TDEVPAGGS(ph)RSEAEDEDDEDYVPYVPLR_
DDX41	Phosphorylation	S23	-0.290	-0.637	_S(ph)EAEDEDDEDYVPYVPLR_
DDX41	Ubiquitylation	K130	0.459		_ALMSVK(gl)EMAK_
DDX42	Phosphorylation	S96	-0.133	-0.665	_RANFDEENAYFEDEEEDSSNVDLPYIPAENS(ph)PTR_
DDX42	Phosphorylation	T98	-0.418	-1.050	_RANFDEENAYFEDEEEDSSNVDLPYIPAENS(ph)PTR_
DDX42	Phosphorylation	Y183	-0.599	-0.570	_YMAENPTAGVVQEEEEDNLEY(ph)DSDGNPIAPTKK_
DDX42	Phosphorylation	S185	-0.524	-0.498	_YMAENPTAGVVQEEEEDNLEYDS(ph)DGNPIAPTKK_
DDX42	Phosphorylation	S754		-0.014	_AGSSAAGASGWTSAGSLNSVPTNSAQQGHNSPDS(ph)PVTSAAK_
DDX46	Ubiquitylation	K272	0.174		_VVTVVTTKK(gl)_
DDX46	Ubiquitylation	K389	-0.180		_ILNSLKK(gl)_
DDX46	Ubiquitylation	K417	0.205	0.586	_DLIGIAK(gl)TGSGK_
DDX46	Ubiquitylation	K765	-0.308		_AEGK(gl)IIKK_
DDX46	Phosphorylation	S804	0.446	0.367	_AALGLQDS(ph)DDEDAAVDIDEQIESMFNSK_
DDX46	Ubiquitylation	K895	0.021		_GGTILAPTVSAK(gl)TIAEQLAEK_
DDX46	Ubiquitylation	K908	0.147		_INAK(gl)LNYVPLEK_
DDX46	Ubiquitylation	K1026		-0.184	_LQNSYQPTNK(gl)GR_
DDX47	Phosphorylation	S9	-0.708	-0.879	_(ac)AAPEEHDS(ph)PT(ph)EASQPIVEEEETK_
DDX47	Phosphorylation	T11	1.396	-0.790	_(ac)AAPEEHDS(ph)PT(ph)EASQPIVEEEETK_
DDX47	Phosphorylation	S14	1.136	0.816	_(ac)AAPEEHDSPTEAS(ph)QPIVEEEETK_
DDX5	Ubiquitylation	K197	-0.288	0.192	_LK(gl)STCIYGGAPK_
DDX5	Ubiquitylation	K207	-0.829	0.102	_STCIYGGAPK(gl)GPQIR_
DDX5	Ubiquitylation	K264		-1.652	_K(gl)IVDQIRPDR_
DDX54	Phosphorylation	T74		-0.548	_LGPGRPLPTFPTSECT(ph)SDVEPDTR_
DDX54	Phosphorylation	S75	-0.422	-0.543	_LGPGRPLPTFPTSECTS(ph)DVEPDTR_
DDX54	Ubiquitylation	K764	1.075	2.500	_YISSSYK(gl)R_
DDX54	Phosphorylation	S782	0.699	0.855	_IDDRDS(ph)DEEGASDR_
DDX55	Phosphorylation	S544	0.381	0.459	_KREEGS(ph)DIEDEDM(ox)EELLNDTR_
DDX56	Ubiquitylation	K134		-0.894	_AVLMEK(gl)PDVVVGTPSR_
DDX56	Ubiquitylation	K439		0.608	_SVTK(gl)QAIR_
DDX59	Phosphorylation	S76		-0.674	_HISESCPFPSPGGQLAEVHSVS(ph)PEQGAK_
DDX59	Phosphorylation	S160	1.955		_ADSEPES(ph)PLNASYVYK_
EIF4A1	Ubiquitylation	K54	0.141	0.814	_GIYAYGFEK(gl)PSAIQQR_
EIF4A1	Ubiquitylation	K68	-0.187	0.201	_AILPCIK(gl)GYDVIAQAQSGTGK_
EIF4A1	Ubiquitylation	K146	-1.101	-1.263	_AEVQK(gl)LQMEAPHIIVGTPGR_
EIF4A1	Ubiquitylation	K174	-0.518	-0.258	_YLSPK(gl)YIK_
EIF4A1	Ubiquitylation	K291		-0.226	_VDWLTEK(gl)MHAR_
EIF4A1	Ubiquitylation	K309	0.062	-0.357	_DFTVSAMHGDMDQK(gl)ERDVIMR_
EIF4A1	Ubiquitylation	K369	0.625	-0.611	_K(gl)GVAINM(ox)VTEEDK(gl)R_
EIF4A1	Ubiquitylation	K381	-0.034	0.613	_K(gl)GVAINM(ox)VTEEDK(gl)R_
EIF4A2	Phosphorylation	S10	1.817		_(ac)ATTATM(ox)ATS(ph)GSARK_
EIF4A2	Phosphorylation	S12	-0.433	0.298	_(ac)ATTATMATSGS(ph)AR_
EIF4A2	Ubiquitylation	K54	0.141	0.814	_GIYAYGFEK(gl)PSAIQQR_
EIF4A2	Ubiquitylation	K68	-0.187	0.201	_AILPCIK(gl)GYDVIAQAQSGTGK_
EIF4A2	Ubiquitylation	K146	-1.101	-1.263	_AEVQK(gl)LQMEAPHIIVGTPGR_
EIF4A2	Phosphorylation	T163		0.454	_KLDYGQHVVAGT(ph)PGR_
EIF4A2	Ubiquitylation	K174	-0.518	-0.258	_YLSPK(gl)YIK_
EIF4A2	Ubiquitylation	K175		0.506	_YLSPK(gl)WIK_
EIF4A2	Ubiquitylation	K291		-0.226	_VDWLTEK(gl)MHAR_
EIF4A2	Ubiquitylation	K309	0.062	-0.357	_DFTVSAMHGDMDQK(gl)ERDVIMR_
EIF4A2	Ubiquitylation	K314	0.119		_EANFTVSSMHGDMPQK(gl)ER_
EIF4A2	Ubiquitylation	K321	0.578	0.367	_ESIMK(gl)EFR_
EIF4A2	Ubiquitylation	K369	0.625	-0.611	_K(gl)GVAINM(ox)VTEEDK(gl)R_
EIF4A2	Ubiquitylation	K374	0.958		_K(gl)GVAINFVK_
EIF4A2	Ubiquitylation	K381	-0.034	0.613	_K(gl)GVAINM(ox)VTEEDK(gl)R_
EIF4A3	Phosphorylation	S10	1.817		_(ac)ATTATM(ox)ATS(ph)GSARK_
EIF4A3	Phosphorylation	S12	-0.433	0.298	_(ac)ATTATMATSGS(ph)AR_
EIF4A3	Phosphorylation	T163		0.454	_KLDYGQHVVAGT(ph)PGR_
EIF4A3	Ubiquitylation	K314	0.119		_EANFTVSSMHGDMPQK(gl)ER_
EIF4A3	Ubiquitylation	K321	0.578	0.367	_ESIMK(gl)EFR_
EIF4A3	Ubiquitylation	K374	0.958		_K(gl)GVAINFVK_