bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »

bioLOGIC Data

bioLOGIC Data


Exact search


Query: DDX4

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
W
[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
DDX4 2 4.094 0.190 0.190 0.081 -0.794 -0.166 -0.062 -0.025

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
DDX4 Ubiquitylation K93 0.657 1.846 _GK(gl)SSFFSDR_
DDX4 Ubiquitylation K130 1.572 1.502 _SGFGK(gl)FER_
DDX4 Ubiquitylation K347 -0.406 0.360 _GK(gl)IGLDFCK_
DDX4 Phosphorylation S104 -0.231 0.320 _SSFFSDRGSGS(ph)R_
DDX4 Phosphorylation S102 0.008 0.230 _SSFFSDRGS(ph)GSR_
DDX4 Phosphorylation S603 -0.330 _SS(ph)RFSGGFGAR_
DDX4 Phosphorylation S602 -0.349 _S(ph)SRFSGGFGAR_
DDX4 Phosphorylation S606 -0.248 -0.447 _FS(ph)GGFGAR_
DDX4 Ubiquitylation K78 1.311 _DK(gl)DAYSSFGSR_
DDX4 Phosphorylation S94 0.172 _S(ph)SFFSDRGSGSR_
DDX4 Ubiquitylation K503 -0.796 _SGK(gl)SPILVATAVAAR_

Background Information for DDX4:


Pubmed-DDX4 »
Uniprot-DDX4 »
Biogrid-DDX4 »
ProteomicsDB-DDX4 »

Tumorportal-DDX4 »
COSMIC-DDX4 »
GenomeRNAi-DDX4 »
Genecards-DDX4


Protein-protein Interactions for DDX4
Show screen data for Category Name and Description Link to cat description Data Source


Protein Domains in DDX4
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members P-loop_NTPase IPR027417 2.83
Category members Helicase_C IPR001650 2.48
Category members Helicase_ATP-bd IPR014001 2.48
Category members DEAD/DEAH_box_helicase_dom IPR011545 0.35
Category members RNA_helicase_DEAD_Q_motif IPR014014 0.24


Protein complexes (CORUM database) featuring DDX4
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring DDX4
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005634 nucleus Database INF
Category members GO Category GO:0005737 cytoplasm Database 12.81
Category members GO Category GO:0030529 ribonucleoprotein complex Database 8.45
Category members GO Category GO:0005524 ATP binding Database 5.54
Category members GO Category GO:0004386 helicase activity Database 2.49
Category members GO Category GO:0003676 nucleic acid binding Database 0.83
Category members GO Category GO:0008026 ATP-dependent helicase activity Database 0.79
Category members GO Category GO:0048471 perinuclear region of cytoplasm Database 0.39
Category members GO Category GO:0007275 multicellular organismal development Database 0.31
Category members GO Category GO:0007141 male meiosis I Database 0
Category members GO Category GO:0007283 spermatogenesis Database 0
Category members GO Category GO:0030317 sperm motility Database 0
Category members GO Category GO:0032880 regulation of protein localization Database 0
Category members GO Category GO:0033391 chromatoid body Database 0


.

© Copyright Svejstrup Laboratory 2015