RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
ASUN	2	-1.610	2.060	-0.729	1.913	1.907	-0.157	0.075
DDX4	2	0.190	0.190	0.081	-0.794	-0.166	-0.062	-0.025
HIST1H1E	2	0.010	0.000	-2.077	-1.246	-0.337	-1.149	-1.118
HIST1H1T	2	-0.750	0.400
LDHC	1	0.660	0.360
LDHC	1	0.660	0.360	-0.305	2.399	-2.477	0.419	0.686
APOB	0	0.130	0.050				-4.359	0.702
DNAJA1	0	0.120	-0.870	-0.002	-0.468	-0.020	-0.575	-0.008
GAPDHS	0	0.660	-0.870	0.283	0.870	0.760	-0.040	-0.473
ATP1A4	0	1.240	-0.590	0.377	0.914	-1.883	0.083	0.031
SORD	0	-0.520	0.450
SORD	0	0.170	0.060
TMF1	0	1.240	-1.110				0.028	0.252
DPCD	0	-0.610	1.470

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ASUN	Ubiquitylation	K167	0.216	-0.015	_IICITNAK(gl)SDSHVR_
ATP1A4	Ubiquitylation	K9	0.245	0.226	_DK(gl)YEPAAVSEQGDKK_
ATP1A4	Phosphorylation	S16	-0.121	0.100	_DKYEPAAVS(ph)EQGDKK_
ATP1A4	Ubiquitylation	K22	0.726		_DKYEPAAVSEQGDKK(gl)_
ATP1A4	Ubiquitylation	K24	0.135		_YEPAAVSEQGDKKGK(gl)_
ATP1A4	Ubiquitylation	K36	1.089	0.875	_DMDELK(gl)K_
ATP1A4	Ubiquitylation	K37	1.220		_DMDELK(gl)KEVSMDDHK_
ATP1A4	Ubiquitylation	K45	-0.107		_EVSMDDHK(gl)LSLDELHR_
ATP1A4	Ubiquitylation	K54	-1.233	0.206	_K(gl)YGTDLSR_
ATP1A4	Ubiquitylation	K156	-1.024	0.552	_SSK(gl)IMESFK_
ATP1A4	Ubiquitylation	K162	-0.474	0.225	_IMESFK(gl)NMVPQQALVIR_
ATP1A4	Ubiquitylation	K212	-0.693	-0.230	_IISANGCK(gl)VDNSSLTGESEPQTR_
ATP1A4	Ubiquitylation	K377	-1.676	-0.190	_NLEAVETLGSTSTICSDK(gl)TGTLTQNR_
ATP1A4	Ubiquitylation	K444	-0.592	-0.292	_AVFQANQENLPILK(gl)R_
ATP1A4	Ubiquitylation	K468	-0.291	0.462	_CIELCCGSVK(gl)EMR_
ATP1A4	Ubiquitylation	K476		1.195	_YAK(gl)IVEIPFNSTNK_
ATP1A4	Ubiquitylation	K508		-1.151	_NPNTSEPQHLLVMK(gl)GAPER_
ATP1A4	Ubiquitylation	K605	0.393	0.204	_AAVPDAVGK(gl)CR_
ATP1A4	Ubiquitylation	K625	-2.291	-0.674	_VIMVTGDHPITAK(gl)AIAK_
ATP1A4	Ubiquitylation	K629		0.204	_AIAK(gl)GVGIISEGNETVEDIAAR_
ATP1A4	Ubiquitylation	K661	-1.060	-0.037	_DAK(gl)ACVVHGSDLK_
ATP1A4	Ubiquitylation	K698	-1.846	-0.336	_TSPQQK(gl)LIIVEGCQR_
ATP1A4	Ubiquitylation	K726	-1.405	-0.328	_QGAIVAVTGDGVNDSPALK(gl)K_
ATP1A4	Ubiquitylation	K727	-1.257	-0.518	_QGAIVAVTGDGVNDSPALKK(gl)_
ATP1A4	Ubiquitylation	K773		0.165	_LIFDNLK(gl)K_
ATP1A4	Ubiquitylation	K840	-1.467	-0.964	_NPK(gl)TDKLVNER_
ATP1A4	Ubiquitylation	K843		0.143	_TDK(gl)LVNER_
ATP1A4	Ubiquitylation	K950		0.029	_NSVFQQGMK(gl)NK_
ATP1A4	Ubiquitylation	K952	-1.917	0.295	_NSVFQQGMKNK(gl)_
DDX4	Ubiquitylation	K78	1.311		_DK(gl)DAYSSFGSR_
DDX4	Ubiquitylation	K93	0.657	1.846	_GK(gl)SSFFSDR_
DDX4	Phosphorylation	S94	0.172		_S(ph)SFFSDRGSGSR_
DDX4	Phosphorylation	S102	0.008	0.230	_SSFFSDRGS(ph)GSR_
DDX4	Phosphorylation	S104	-0.231	0.320	_SSFFSDRGSGS(ph)R_
DDX4	Ubiquitylation	K130	1.572	1.502	_SGFGK(gl)FER_
DDX4	Ubiquitylation	K347	-0.406	0.360	_GK(gl)IGLDFCK_
DDX4	Ubiquitylation	K503	-0.796		_SGK(gl)SPILVATAVAAR_
DDX4	Phosphorylation	S602		-0.349	_S(ph)SRFSGGFGAR_
DDX4	Phosphorylation	S603		-0.330	_SS(ph)RFSGGFGAR_
DDX4	Phosphorylation	S606	-0.248	-0.447	_FS(ph)GGFGAR_
DNAJA1	Ubiquitylation	K32		0.112	_LALK(gl)YHPDKNPNEGEK_
DNAJA1	Ubiquitylation	K46		0.780	_FK(gl)QISQAYEVLSDAK_
DNAJA1	Ubiquitylation	K59	-0.126	0.382	_QISQAYEVLSDAK(gl)KR_
DNAJA1	Ubiquitylation	K60	-0.126	0.360	_QISQAYEVLSDAKK(gl)R_
DNAJA1	Ubiquitylation	K66	0.241	0.693	_ELYDK(gl)GGEQAIK_
DNAJA1	Ubiquitylation	K136	0.203	1.222	_NVICDK(gl)CEGR_
DNAJA1	Ubiquitylation	K144	-0.122	0.230	_K(gl)GAVECCPNCR_
DNAJA1	Phosphorylation	S335	-0.112	0.143	_VNFPENGFLS(ph)PDKLSLLEK_
DPCD	Ubiquitylation	K123	-0.212		_DVYSVSVDQK(gl)ER_
GAPDHS	Ubiquitylation	K61	0.521	0.820	_FHGTVK(gl)AENGK_
GAPDHS	Ubiquitylation	K66	-0.023		_FHGTVKAENGK(gl)_
GAPDHS	Ubiquitylation	K86	0.473		_IK(gl)WGDAGAEYVVESTGVFTTMEK_
GAPDHS	Ubiquitylation	K117	1.371		_AGAHLQGGAK(gl)R_
GAPDHS	Ubiquitylation	K145	0.536	0.707	_YDNSLK(gl)IISNASCTTNCLAPLAK_
GAPDHS	Ubiquitylation	K194	0.139	0.426	_TVDGPSGK(gl)LWR_
GAPDHS	Ubiquitylation	K215	0.068	0.425	_GALQNIIPASTGAAK(gl)AVGK_
GAPDHS	Ubiquitylation	K219		0.588	_GALQNIIPASTGAAKAVGK(gl)_
GAPDHS	Ubiquitylation	K254	-0.005		_LEKPAK(gl)YDDIKK_
GAPDHS	Ubiquitylation	K259	-0.052	0.054	_LEKPAKYDDIK(gl)K_
GAPDHS	Ubiquitylation	K260	0.061	-0.269	_LEKPAKYDDIKK(gl)_
GAPDHS	Ubiquitylation	K263	-0.140	0.790	_VVK(gl)QASEGPLK_
HIST1H1E	Phosphorylation	S2	-1.308	-1.220	_S(ph)ETAPAAPAAPAPAEK_
HIST1H1E	Phosphorylation	T4	-1.741	-0.745	_(ac)SET(ph)APAAPAAPAPAEK_
HIST1H1E	Phosphorylation	T18	-2.773	-1.986	_(ac)S(ph)ETAPAAPAAPAPAEKT(ph)PVKK_
HIST1H1E	Phosphorylation	S36		-0.319	_RKAS(ph)GPPVSELITK_
HIST1H1T	Ubiquitylation	K64	1.076	1.046	_K(gl)ALAAAGYDVEKNNSR_
HIST1H1T	Ubiquitylation	K75	1.615	2.152	_KALAAAGYDVEK(gl)NNSR_
LDHC	Ubiquitylation	K5		0.146	_(ac)STVK(gl)EQLIEK_
LDHC	Ubiquitylation	K7		-0.548	_EK(gl)LIAPVAEEEATVPNNK_
LDHC	Ubiquitylation	K81		-0.271	_ITSGK(gl)DYSVSANSR_
LDHC	Ubiquitylation	K82		0.531	_IVADK(gl)DYSVTANSK_
LDHC	Ubiquitylation	K308	-0.099	0.921	_GLTSVINQK(gl)LKDDEVAQLK_
LDHC	Ubiquitylation	K310	0.087	-0.793	_LK(gl)DDEVAQLKK_
LDHC	Ubiquitylation	K318	-0.094	-1.111	_LKDDEVAQLK(gl)K_
LDHC	Ubiquitylation	K329		0.419	_SADTLWDIQK(gl)DLKDL_
LDHC	Ubiquitylation	K332	0.762		_SADTLWDIQKDLK(gl)DL_
SORD	Ubiquitylation	K107		-0.082	_ENDEFCK(gl)MGR_
SORD	Ubiquitylation	K319		-1.308	_SVNVK(gl)PLVTHR_
TMF1	Phosphorylation	S160		-1.216	_DSSLCVS(ph)GETLAAGTSSPK_
TMF1	Phosphorylation	S344	0.779	-0.050	_SVSEINS(ph)DDELSGK_
TMF1	Phosphorylation	S399	-0.276	-0.307	_S(ph)ATPVNCEQPDILVSSTPINEGQTVLDK_
TMF1	Phosphorylation	T401	-0.276	-0.307	_S(ph)ATPVNCEQPDILVSSTPINEGQTVLDK_