RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
W

Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
RAB7A	1	1.540	-0.590	0.299	1.971	-0.775	0.288	-0.293
RAB34	1	3.070	-0.960
RAB34	1	3.070	-0.960				0.141
RAB22A	1	2.620	-1.080				0.590
RAB22A	1	2.620	-1.080	0.223
RAC2	1	-1.520	2.710	0.486			-0.364	-0.568
RAN	1			0.795	0.949	-0.688	0.566	0.288
KRAS	1	-0.510	0.620				1.031	0.887
KRAS	1	-0.510	0.620				0.246	-0.346
RAB6B	1	-1.790	3.450				0.752	0.721
RAB6B	1	-1.790	3.450		1.078	-1.682
RAB6B	1	-1.790	3.450				-0.345	0.336
RAB24	1	0.100	-0.060
RHOG	1	0.080	-0.800	1.988			-0.433	-0.542
RALA	0	-0.480	0.600				0.727	0.398
RAB21	0	0.800	0.060	0.539			0.340	0.241
RAB10	0	-0.280	-0.200	-0.051			0.529	0.549
RAB1A	0	0.980	-0.460		1.641	-1.484	0.560	0.491
RAB18	0	1.900	-0.740				0.023	0.389
RAB11A	0	1.130	-0.130	0.324			0.697	0.458
RAB11A	0	1.130	-0.130
RAB2A	0	0.030	0.470	1.242			0.604	0.660
RAB5B	0	-0.270	0.560				0.223	0.256
RAB35	0	-0.410	0.700				0.588	0.619
RAB23	0	1.290	-1.270				-0.106	0.952
RHOU	0	0.620	-1.000
RAB29	0	-0.030	-0.470				1.011	0.091
RAB14	0	0.630	-0.150				0.314	0.321
RAB9B	0	-0.240	-0.300				0.793	0.935
RAB9A	0	1.450	-0.760				0.793	0.935
RAB38	0	-1.070	1.480				1.011	0.091
RAP1B	0	-0.520	0.540	-0.200			0.374	0.556
RAB2B	0	0.310	-0.290	1.242			0.604	0.660
RAB25	0	0.260	-0.610	0.324			0.697	0.458
RAB33A	0	-0.490	0.540				0.261	-0.091
RAB15	0	0.710	-0.750		1.641	-1.484	0.560	0.491
RAB1A	0	0.980	-0.460				-0.532
RAB13	0	0.550	-0.760		1.641	-1.484	0.560	0.491
RAB15	0	0.710	-0.750	-0.051			0.529	0.549
RAB10	0	-0.280	-0.200		1.641	-1.484	0.560	0.491
RALB	0	-0.960	2.060
RAB5A	0	-0.440	0.910				0.089	-0.362
RAB5A	0	0.080	0.240				0.089	-0.362
RAB3C	0	-1.560	1.830				-0.216
RASEF	0	-0.660	0.840
RAB8B	0	-0.070	0.130	-0.051			0.529	0.549
RAB8B	0	-0.070	0.130		1.641	-1.484	0.560	0.491
RAB8B	0	-0.070	0.130				-0.216
RAB8A	0	-0.300	0.550				0.568	0.278
RAB8A	0	-0.300	0.550		1.641	-1.484	0.560	0.491
RAB4B	0	-0.930	0.860	1.242			0.604	0.660
RAB4B	0	-0.160	0.230	1.242			0.604	0.660
RAB31	0	-0.330	-0.520				0.590
RAB31	0	-0.330	-0.520	0.223
RAB3B	0	-0.490	0.220
RAB3B	0	-0.490	0.220				-0.216
RAB33B	0	-1.210	1.500				0.261	-0.091
RAB1B	0	0.810	-0.570		1.641	-1.484	0.560	0.491
RAB1B	0	0.810	-0.570	-0.279			0.069	0.147
RAB6A	0	-1.080	1.980				0.752	0.721
RAB6A	0	-1.080	1.980		1.078	-1.682
RAB39A	0	-0.780	0.530		1.078	-1.682
RAB11B	0	-0.130	-0.140	0.324			0.697	0.458
RAB11B	0	-0.130	-0.140
RAB12	0	0.390	0.030
RAB6C	0	-0.230	0.530				-0.345	0.336

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
KRAS	Ubiquitylation	K128	1.528	1.433	_TVDTK(gl)QAHELAK_
KRAS	Ubiquitylation	K235	0.591	0.087	_TVDTK(gl)QAQDLAR_
KRAS	Ubiquitylation	K254	-0.450	-0.156	_SYGIPFIETSAK(gl)TR_
RAB10	Ubiquitylation	K102	-0.105		_SFENISK(gl)WLR_
RAB10	Ubiquitylation	K163		0.199	_LLLGNK(gl)CDMEAK_
RAB10	Ubiquitylation	K174	-0.188		_VQK(gl)EQADKLAR_
RAB10	Ubiquitylation	K213	-0.059	0.420	_DILLK(gl)SGGR_
RAB11A	Ubiquitylation	K69	-0.533	0.554	_VVLIGDSGVGK(gl)SNLLSR_
RAB11A	Ubiquitylation	K103	-0.360	-0.185	_SIQVDGK(gl)TIK_
RAB11A	Ubiquitylation	K106		0.335	_SIQVDGKTIK(gl)_
RAB11A	Ubiquitylation	K224	-0.187	0.901	_IVSQK(gl)QMSDRR_
RAB11B	Ubiquitylation	K69	-0.533	0.554	_VVLIGDSGVGK(gl)SNLLSR_
RAB11B	Ubiquitylation	K103	-0.360	-0.185	_SIQVDGK(gl)TIK_
RAB11B	Ubiquitylation	K106		0.335	_SIQVDGKTIK(gl)_
RAB12	Phosphorylation	S21	-0.451	0.146	_RAGGGGGLGAGS(ph)PALSGGQGR_
RAB12	Ubiquitylation	K172	0.251	0.981	_QQGEK(gl)FAQQITGMR_
RAB13	Ubiquitylation	K163		0.199	_LLLGNK(gl)CDMEAK_
RAB13	Ubiquitylation	K174	-0.188		_VQK(gl)EQADKLAR_
RAB13	Ubiquitylation	K213	-0.059	0.420	_DILLK(gl)SGGR_
RAB14	Ubiquitylation	K170	-1.161		_TGENVEDAFLEAAK(gl)K_
RAB14	Ubiquitylation	K171	-1.161	-0.915	_TGENVEDAFLEAAKK(gl)_
RAB14	Ubiquitylation	K193		-0.640	_IYQNIQDGSLDLNAAESGVQHK(gl)PSAPQGGR_
RAB15	Ubiquitylation	K102	-0.105		_SFENISK(gl)WLR_
RAB15	Ubiquitylation	K163		0.199	_LLLGNK(gl)CDMEAK_
RAB15	Ubiquitylation	K174	-0.188		_VQK(gl)EQADKLAR_
RAB15	Ubiquitylation	K213	-0.059	0.420	_DILLK(gl)SGGR_
RAB18	Ubiquitylation	K56	0.134		_TISVDGNK(gl)AK_
RAB18	Ubiquitylation	K58	0.158	0.172	_TISVDGNKAK(gl)_
RAB18	Ubiquitylation	K138	0.233	-0.286	_NEGLK(gl)FAR_
RAB18	Ubiquitylation	K142	0.400		_K(gl)HSM(ox)LFIEASAK_
RAB18	Ubiquitylation	K183	-0.099	-0.335	_IIQTPGLWESENQNK(gl)GVK_
RAB1A	Phosphorylation	S2	-0.429	0.634	_(ac)S(ph)SM(ox)NPEYDYLFK_
RAB1A	Phosphorylation	S3	-0.429	0.634	_(ac)S(ph)SM(ox)NPEYDYLFK_
RAB1A	Ubiquitylation	K58	-0.012	-0.593	_TIELDGK(gl)TIK_
RAB1A	Ubiquitylation	K61		-0.593	_TIELDGK(gl)TIK_
RAB1A	Ubiquitylation	K119	0.581	0.444	_YASENVNK(gl)LLVGNK_
RAB1A	Ubiquitylation	K131		0.790	_LLVGNKCDLTTK(gl)K_
RAB1A	Ubiquitylation	K132	-0.154		_LLVGNKCDLTTKK(gl)_
RAB1A	Ubiquitylation	K163		0.199	_LLLGNK(gl)CDMEAK_
RAB1A	Ubiquitylation	K174	-0.188		_VQK(gl)EQADKLAR_
RAB1A	Ubiquitylation	K187	0.229	0.152	_MGPGATAGGAEK(gl)SNVK_
RAB1A	Ubiquitylation	K191	-0.108	0.036	_SNVK(gl)IQSTPVK_
RAB1A	Ubiquitylation	K213	-0.059	0.420	_DILLK(gl)SGGR_
RAB1B	Ubiquitylation	K163		0.199	_LLLGNK(gl)CDMEAK_
RAB1B	Ubiquitylation	K174	-0.188		_VQK(gl)EQADKLAR_
RAB1B	Ubiquitylation	K213	-0.059	0.420	_DILLK(gl)SGGR_
RAB21	Ubiquitylation	K138	0.255	-0.579	_IDLEK(gl)ER_
RAB22A	Phosphorylation	S36	0.043	0.209	_FVQDHFDHNIS(ph)PTIGASFMTK_
RAB22A	Ubiquitylation	K178	-0.542		_RIPSTDANLPSGGK(gl)GFK_
RAB22A	Ubiquitylation	K181	-0.651		_RIPSTDANLPSGGK(gl)GFK_
RAB24	Ubiquitylation	K104	0.985	1.040	_FWVK(gl)ELR_
RAB24	Ubiquitylation	K156	1.852	-0.833	_AQLFETSSK(gl)TGQSVDELFQK_
RAB29	Ubiquitylation	K20		-1.240	_VLVVGDAAVGK(gl)TSLVQR_
RAB2A	Ubiquitylation	K53		0.222	_MITIDGK(gl)QIK_
RAB2A	Ubiquitylation	K56	0.780	0.222	_MITIDGKQIK(gl)_
RAB2A	Ubiquitylation	K130	0.698	0.961	_EVK(gl)KEEGEAFAR_
RAB2B	Ubiquitylation	K53		0.222	_MITIDGK(gl)QIK_
RAB2B	Ubiquitylation	K56	0.780	0.222	_MITIDGKQIK(gl)_
RAB2B	Ubiquitylation	K130	0.698	0.961	_EVK(gl)KEEGEAFAR_
RAB31	Phosphorylation	S36	0.043	0.209	_FVQDHFDHNIS(ph)PTIGASFMTK_
RAB31	Ubiquitylation	K178	-0.542		_RIPSTDANLPSGGK(gl)GFK_
RAB31	Ubiquitylation	K181	-0.651		_RIPSTDANLPSGGK(gl)GFK_
RAB34	Ubiquitylation	K267	0.108	-0.979	_INSDDSNLYLTASK(gl)K_
RAB34	Ubiquitylation	K268	0.108	-0.979	_INSDDSNLYLTASK(gl)K_
RAB35	Ubiquitylation	K178	1.400	0.800	_DNLAK(gl)QQQQQQNDVVK_
RAB35	Ubiquitylation	K189	0.712	0.634	_QQQQQQNDVVK(gl)LTK_
RAB38	Ubiquitylation	K20		-1.240	_VLVVGDAAVGK(gl)TSLVQR_
RAB39A	Ubiquitylation	K144	0.298	0.546	_EEAEK(gl)LSADCGMK_
RAB39A	Ubiquitylation	K180	-0.955		_DIYELIK(gl)K_
RAB3B	Ubiquitylation	K8	0.091	0.366	_(ac)ASVTDGK(gl)TGVK_
RAB3B	Phosphorylation	S190		1.210	_MSDS(ph)LDTDPSMLGSSK_
RAB3B	Ubiquitylation	K202	-0.287	0.224	_MSDSLDTDPSMLGSSK(gl)NTR_
RAB4B	Ubiquitylation	K53		0.222	_MITIDGK(gl)QIK_
RAB4B	Ubiquitylation	K56	0.780	0.222	_MITIDGKQIK(gl)_
RAB4B	Ubiquitylation	K130	0.698	0.961	_EVK(gl)KEEGEAFAR_
RAB5B	Ubiquitylation	K116	0.332	0.600	_TWVK(gl)ELQR_
RAB6A	Phosphorylation	S2	-0.159	-0.138	_(ac)S(ph)TGGDFGNPLRK_
RAB6A	Phosphorylation	T3	-0.614	-0.138	_(ac)ST(ph)GGDFGNPLR_
RAB6A	Ubiquitylation	K144	0.298	0.546	_EEAEK(gl)LSADCGMK_
RAB6A	Ubiquitylation	K180	-0.955		_DIYELIK(gl)K_
RAB6B	Phosphorylation	S2	-0.159	-0.138	_(ac)S(ph)TGGDFGNPLRK_
RAB6B	Phosphorylation	T3	-0.614	-0.138	_(ac)ST(ph)GGDFGNPLR_
RAB6B	Ubiquitylation	K144	0.298	0.546	_EEAEK(gl)LSADCGMK_
RAB6B	Ubiquitylation	K180	-0.955		_DIYELIK(gl)K_
RAB7A	Ubiquitylation	K32	0.922	1.260	_K(gl)FSNQYK_
RAB7A	Ubiquitylation	K38	0.713	1.294	_FSNQYK(gl)ATIGADFLTK_
RAB7A	Ubiquitylation	K146		-0.718	_AQAWCYSK(gl)NNIPYFETSAK_
RAB8A	Ubiquitylation	K3	0.848		_(ac)AK(gl)TYDYLFK_
RAB8A	Ubiquitylation	K138	1.091		_ERGEK(gl)LALDYGIK_
RAB8A	Ubiquitylation	K163		0.199	_LLLGNK(gl)CDMEAK_
RAB8A	Ubiquitylation	K174	-0.188		_VQK(gl)EQADKLAR_
RAB8A	Phosphorylation	S185	0.117	0.264	_KLEGNSPQGS(ph)NQGVK_
RAB8A	Ubiquitylation	K190	-0.573		_LEGNSPQGSNQGVK(gl)ITPDQQK_
RAB8A	Ubiquitylation	K213	-0.059	0.420	_DILLK(gl)SGGR_
RAB8B	Ubiquitylation	K102	-0.105		_SFENISK(gl)WLR_
RAB8B	Ubiquitylation	K163		0.199	_LLLGNK(gl)CDMEAK_
RAB8B	Ubiquitylation	K174	-0.188		_VQK(gl)EQADKLAR_
RAB8B	Ubiquitylation	K213	-0.059	0.420	_DILLK(gl)SGGR_
RAB9A	Ubiquitylation	K4	-0.153	-0.091	_(ac)AGK(gl)SSLFK_
RAB9A	Phosphorylation	T175		0.548	_VLAT(ph)EDRSDHLIQTDTVNLHR_
RAB9A	Phosphorylation	S179		0.548	_VLAT(ph)EDRSDHLIQTDTVNLHR_
RAB9B	Ubiquitylation	K4	-0.153	-0.091	_(ac)AGK(gl)SSLFK_
RAB9B	Phosphorylation	T175		0.548	_VLAT(ph)EDRSDHLIQTDTVNLHR_
RAB9B	Phosphorylation	S179		0.548	_VLAT(ph)EDRSDHLIQTDTVNLHR_
RAC2	Ubiquitylation	K115	-1.745	-0.215	_AK(gl)WYPEVR_
RAC2	Ubiquitylation	K142	0.492		_LDLRDDK(gl)DTIEK_
RAC2	Ubiquitylation	K152	0.099	-0.292	_K(gl)LTPITYPQGLAMAK_
RAC2	Ubiquitylation	K166	-0.981	-0.655	_LTPITYPQGLAMAK(gl)EIGAVK_
RAC2	Ubiquitylation	K172	1.026	0.412	_EIGAVK(gl)YLECSALTQR_
RAC2	Ubiquitylation	K185	-0.113	0.578	_GLK(gl)TVFDEAIR_
RAC2	Ubiquitylation	K202	-1.379	-1.447	_AVLCPPPVK(gl)KR_
RAC2	Ubiquitylation	K203	-1.708	-1.447	_AVLCPPPVKK(gl)_
RALA	Ubiquitylation	K7	0.700		_(ac)AANKPK(gl)GQNSLALHK_
RALA	Ubiquitylation	K134	0.656	-0.585	_SDLEDK(gl)RQVSVEEAK_
RALA	Ubiquitylation	K143		-0.388	_QVSVEEAK(gl)NR_
RALB	Ubiquitylation	K29	0.645		_SK(gl)GQSSLALHK_
RAN	Ubiquitylation	K23	0.056		_LVLVGDGGTGK(gl)TTFVK_
RAN	Ubiquitylation	K37	0.841		_HLTGEFEK(gl)K_
RAN	Ubiquitylation	K60	-0.488	0.477	_GPIK(gl)FNVWDTAGQEK_
RAN	Ubiquitylation	K71	1.279		_FNVWDTAGQEK(gl)FGGLR_
RAN	Ubiquitylation	K116	-0.044	1.823	_VTYK(gl)NVPNWHR_
RAN	Ubiquitylation	K140	-0.020	0.586	_VCENIPIVLCGNK(gl)VDIK_
RAN	Ubiquitylation	K144	0.131	0.529	_VCENIPIVLCGNKVDIK(gl)DR_
RAN	Ubiquitylation	K147	0.000		_VCENIPIVLCGNKVDIKDRK(gl)_
RAN	Ubiquitylation	K151	1.342	0.712	_AK(gl)SIVFHR_
RAN	Ubiquitylation	K158	0.185	0.370	_K(gl)KNLQYYDISAK_
RAN	Ubiquitylation	K159	0.246	0.274	_K(gl)NLQYYDISAK_
RAN	Ubiquitylation	K176		1.593	_SNYNFEK(gl)PFLWLAR_
RAP1B	Ubiquitylation	K174	0.197		_KTPVPGK(gl)AR_
RASEF	Ubiquitylation	K366	-0.615	-0.099	_SALENSYSK(gl)FNR_
RASEF	Phosphorylation	S377	-0.509	-0.355	_SLHINNIS(ph)PGNTISR_
RHOG	Ubiquitylation	K183	-0.963		_AVLNPTPIK(gl)R_
RHOU	Ubiquitylation	K248	-0.507		_NLSK(gl)SWWK_