RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
ERCC2	2	-0.590	1.060	-0.491		1.066
ACO2	1	0.840	-0.860	0.064	1.695	-0.763	1.166	0.817
ACO1	1	-2.080	4.040
BRIP1	1	0.650	-0.340
DNA2	1			1.707
ETFDH	1	2.210	-1.290				0.855	0.214
REV3L	0	-0.700	0.890
DDX11	0	-0.980	0.900
NDUFS1	0	-0.550	0.770	0.388	-0.330	-1.498	0.368	0.186
POLD1	0	1.600	-1.300	-0.932			0.362	0.283
POLD1	0	1.600	-1.300
NTHL1	0	0.810	-0.080				1.191	1.167
CDK5RAP1	0	-0.230	0.000
POLA1	0	0.720	-0.610	0.594			0.355	0.027
NDUFS8	0	0.480	0.100	0.556			0.300	0.534
NDUFS7	0	1.220	-0.670	-0.853			-0.390	-1.647
NDUFS7	0	1.220	-0.670		0.036	-0.063
SDHB	0	-0.720	0.810	-0.156	-0.332	-1.201	0.467	0.434
PPAT	0	-0.100	-0.040
IREB2	0	-0.280	-0.190
CDKAL1	0	0.070	0.220				0.046	0.108
NUBPL	0	0.370	-0.320		0.486
NDUFS2	0	0.150	0.060	0.489	-0.323	-1.479
NDUFV1	0	-0.620	0.680				-0.032	0.387
POLE	0				-0.404	0.128	-0.376	-0.212
POLE	0			-0.273
TYW1	0	0.400	-0.200

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ACO1	Ubiquitylation	K79		-0.349	_NIEVPFK(gl)PAR_
ACO1	Ubiquitylation	K396		-0.346	_DFESCLGAK(gl)QGFK_
ACO2	Ubiquitylation	K13		-1.183	_LQK(gl)ALGVR_
BRIP1	Phosphorylation	S112	0.807	1.459	_HFNYPS(ph)TPPSER_
BRIP1	Phosphorylation	T113	1.675		_HFNYPST(ph)PPSER_
BRIP1	Phosphorylation	S206		-0.381	_INSFS(ph)PQKPPGHCSR_
BRIP1	Ubiquitylation	K764		-0.462	_GK(gl)VSEGLDFSDDNAR_
BRIP1	Ubiquitylation	K797	-0.723	0.188	_DLQVELK(gl)R_
BRIP1	Phosphorylation	S1032	-0.789	-0.532	_ATPELGSSENSASS(ph)PPR_
BRIP1	Phosphorylation	S1237	0.424	0.355	_NFKPS(ph)PSK_
CDK5RAP1	Ubiquitylation	K189		-0.716	_LK(gl)EEILNR_
CDK5RAP1	Ubiquitylation	K348		-1.373	_GFTTNYKTK(gl)_
CDK5RAP1	Ubiquitylation	K396		-1.590	_DNICK(gl)QIHLPAQSGSSR_
CDK5RAP1	Ubiquitylation	K487		-1.858	_LK(gl)DDVPEEVK_
CDK5RAP1	Ubiquitylation	K495		-1.951	_LKDDVPEEVK(gl)LR_
CDKAL1	Phosphorylation	S3		1.102	_PS(ph)ASCDTLLDDIEDIVSQEDSKPQDR_
CDKAL1	Phosphorylation	S5		0.811	_PSAS(ph)CDTLLDDIEDIVSQEDSKPQDR_
CDKAL1	Ubiquitylation	K343		0.633	_EYCVADFK(gl)R_
CDKAL1	Ubiquitylation	K496		-1.923	_GQPVSDAK(gl)VYTPSISKPLAK_
CDKAL1	Ubiquitylation	K516	0.544	0.286	_GEVSGLTK(gl)DFR_
DDX11	Ubiquitylation	K173	0.779	-0.864	_VQLK(gl)YAAK_
DDX11	Ubiquitylation	K520		-0.747	_YCEK(gl)SMISR_
DDX11	Ubiquitylation	K830		-1.499	_SAELQEK(gl)MAYLDQTLPR_
DNA2	Ubiquitylation	K589		-1.040	_LMENTFVSK(gl)K_
DNA2	Ubiquitylation	K590		-1.040	_LMENTFVSK(gl)K_
DNA2	Ubiquitylation	K811		-0.860	_ALGMSESLFK(gl)R_
ERCC2	Ubiquitylation	K268	5.973	1.957	_CQGNLETLQK(gl)TVLR_
ERCC2	Ubiquitylation	K507		-2.034	_GNDQVAISSK(gl)FETR_
IREB2	Ubiquitylation	K34		-0.190	_LGTK(gl)YDVLPYSIR_
IREB2	Ubiquitylation	K72		-0.991	_TK(gl)QSNVEVPFFPAR_
IREB2	Ubiquitylation	K107		-0.118	_EAVK(gl)TLGGDPEK_
IREB2	Ubiquitylation	K404		0.190	_AK(gl)LESMETYLK_
IREB2	Ubiquitylation	K413		-0.308	_AKLESM(ox)ETYLK(gl)AVK_
IREB2	Ubiquitylation	K461		0.236	_VAVTDMK(gl)SDFQACLNEK_
IREB2	Ubiquitylation	K475		-0.206	_VGFK(gl)GFQIAAEK_
IREB2	Ubiquitylation	K611		0.037	_QGDLVTCGILSGNK(gl)NFEGR_
IREB2	Ubiquitylation	K696	-1.215	-0.023	_IEMGNK(gl)R_
IREB2	Ubiquitylation	K769	-1.464	-0.009	_NSAAAK(gl)YLTNR_
IREB2	Ubiquitylation	K803		0.505	_GTFANIK(gl)LFNK_
IREB2	Ubiquitylation	K847		-0.038	_EGIPLIILAGK(gl)K_
IREB2	Ubiquitylation	K848		-0.038	_EGIPLIILAGK(gl)K_
IREB2	Ubiquitylation	K860		0.906	_DWAAK(gl)GPYLLGVK_
NDUFS1	Ubiquitylation	K298		-1.134	_FAYDGLK(gl)R_
NDUFS8	Ubiquitylation	K88		-1.865	_EPATINYPFEK(gl)GPLSPR_
POLA1	Phosphorylation	S192	-0.049	-0.187	_S(ph)IGASPNPFSVHTATAVPSGK_
POLA1	Phosphorylation	S196		-0.374	_RSIGAS(ph)PNPFSVHTATAVPSGK_
POLA1	Ubiquitylation	K1120		-0.317	_DTIVENIQK(gl)R_
POLD1	Ubiquitylation	K414		-1.315	_AQTLK(gl)VQTFPFLGR_
POLD1	Ubiquitylation	K439		-1.108	_DSSFQSK(gl)QTGRR_
POLD1	Ubiquitylation	K447		-1.286	_DTK(gl)VVSMVGR_
POLD1	Ubiquitylation	K554		-0.798	_GQQVK(gl)VVSQLLR_
POLD1	Ubiquitylation	K674	-1.082	-1.843	_TPTGDEFVK(gl)TSVR_
POLD1	Ubiquitylation	K758		-0.638	_TK(gl)QLVESK_
POLD1	Ubiquitylation	K853	-0.080	-1.776	_MDCK(gl)GLEAVR_
POLD1	Ubiquitylation	K911	-0.089	-0.915	_IDISQLVITK(gl)ELTR_
POLD1	Ubiquitylation	K923		-2.496	_AASDYAGK(gl)QAHVELAER_
POLD1	Ubiquitylation	K1033	0.475	-0.930	_VGGLLAFAK(gl)R_
POLD1	Ubiquitylation	K1065	-0.208		_ESELYQK(gl)EVSHLNALEER_
POLE	Ubiquitylation	K187		-0.801	_EISPAVKK(gl)_
POLE	Ubiquitylation	K436		-0.163	_DSYLPVGSHNLK(gl)AAAK_
POLE	Ubiquitylation	K1061		-1.582	_KLEDYGEQK(gl)STSISTAK_
POLE	Ubiquitylation	K1081		-1.440	_LAEFLGDQMVK(gl)DAGLSCR_
POLE	Ubiquitylation	K1385	-1.054	-0.957	_VAK(gl)AEEGASYR_
POLE	Ubiquitylation	K1573		-0.910	_AETDLK(gl)TICR_
POLE	Ubiquitylation	K1587		-0.722	_FLLAYK(gl)EER_
POLE	Ubiquitylation	K2121	0.432		_YVCK(gl)VLSLDTNITNQVNK_
POLE	Ubiquitylation	K2135	-0.740	-1.214	_VLSLDTNITNQVNK(gl)LNR_
PPAT	Ubiquitylation	K403		-1.376	_GNTISPIIK(gl)LLK_
PPAT	Ubiquitylation	K406		-1.376	_GNTISPIIK(gl)LLK_
REV3L	Phosphorylation	S1724	0.363	0.417	_SGTLS(ph)PEIFEK_
TYW1	Ubiquitylation	K52		-0.508	_NLQEK(gl)SVPK_