RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
NAE1	2	-2.100	3.690
AIFM1	1	1.570	0.130	0.210	0.652	-1.014	0.280	0.386
HTT	1	-0.200	-0.360	0.632			0.847	0.550
FAS	0	1.380	-1.070
FAS	0	1.380	-1.070
PSEN1	0	0.930	-1.110
BAX	0	1.590	-1.170				0.811	0.359
NLRP1	0	-0.960	0.730
GAPDH	0	0.130	0.380	0.283	0.870	0.760	-0.040	-0.473
FAM162A	0	-0.790	0.840				-0.398	-0.477
PIGT	0	-0.980	1.680				0.580	0.500
MAX	0	-0.780	0.530		-0.276	0.290
MAX	0	-0.780	0.530
RB1	0	1.180	-1.070		0.429	0.755
RB1	0	1.180	-1.070
TP53	0	-1.070	1.050	-2.808	0.076	-0.094	0.436	0.497
APP	0	0.100	-0.260					0.285
ATM	0						0.398	0.474
CASP3	0	0.570	-0.390
CDK5	0	-1.100	1.740	-0.236			1.063	0.312
BCL2L1	0
BCL2	0	0.910	-0.740
BNIP3	0	0.610	-0.650
AATK	0	-0.220	0.730				0.624	-1.011
DIABLO	0	0.740	-0.290				0.517	0.500
DIABLO	0	0.740	-0.290	-0.061
SIAH1	0	1.220	-0.570

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
AIFM1	Ubiquitylation	K111	1.676		_ISGLGLTPEQKQK(gl)_
AIFM1	Ubiquitylation	K518	-0.545	-0.262	_ATAQDNPK(gl)SATEQSGTGIR_
APP	Ubiquitylation	K751	-1.778	-1.280	_HLSK(gl)M(ox)QQNGYENPTYK_
ATM	Ubiquitylation	K307		-0.196	_GAYESTK(gl)WR_
ATM	Ubiquitylation	K331		-0.126	_GK(gl)YSSGFR_
ATM	Ubiquitylation	K385		-0.669	_ESSDYSVPCK(gl)R_
ATM	Ubiquitylation	K1101		-0.548	_LFQDTK(gl)GDSSR_
ATM	Ubiquitylation	K1109		-1.666	_LLK(gl)ALPLK_
ATM	Ubiquitylation	K1698		-1.026	_DASYTK(gl)ALK_
ATM	Ubiquitylation	K1738		-0.137	_SAAVTCLK(gl)NILATK_
ATM	Ubiquitylation	K2025		-1.497	_SIGEPDSLYGCGGGK(gl)MLQPITR_
BAX	Ubiquitylation	K57		-1.174	_MGGEAPELALDPVPQDASTK(gl)K_
BAX	Ubiquitylation	K58	-1.718	-1.174	_MGGEAPELALDPVPQDASTKK(gl)_
BAX	Ubiquitylation	K64	0.708	1.306	_LSECLK(gl)R_
BCL2	Ubiquitylation	K22	1.480		_YIHYK(gl)LSQR_
BCL2L1	Ubiquitylation	K87	0.026		_EVIPMAAVK(gl)QALR_
BNIP3	Phosphorylation	S136	0.383	0.514	_ASETDTHS(ph)IGEK_
BNIP3	Ubiquitylation	K161	0.164	-0.368	_EVESILK(gl)K_
CASP3	Ubiquitylation	K11	-0.053	-0.687	_(ac)MENTENSVDSK(gl)SIK_
CASP3	Ubiquitylation	K14	-0.455	-0.687	_SIK(gl)NLEPK_
CASP3	Ubiquitylation	K57	-0.304	-1.817	_NFHK(gl)STGMTSR_
CASP3	Ubiquitylation	K82	-0.268	-0.605	_NLK(gl)YEVR_
CDK5	Ubiquitylation	K56	0.606	0.237	_EICLLK(gl)ELK_
FAM162A	Ubiquitylation	K144		-0.327	_LK(gl)EEAAMK_
FAS	Phosphorylation	S236	-0.027		_ENQGS(ph)HESPTLNPETVAINLSDVDLSK_
FAS	Phosphorylation	S239	0.266		_ENQGSHES(ph)PTLNPETVAINLSDVDLSK_
FAS	Ubiquitylation	K343	1.126		_IQTIILK(gl)DITSDSENSNFR_
GAPDH	Ubiquitylation	K61	0.521	0.820	_FHGTVK(gl)AENGK_
GAPDH	Ubiquitylation	K66	-0.023		_FHGTVKAENGK(gl)_
GAPDH	Ubiquitylation	K86	0.473		_IK(gl)WGDAGAEYVVESTGVFTTMEK_
GAPDH	Ubiquitylation	K117	1.371		_AGAHLQGGAK(gl)R_
GAPDH	Ubiquitylation	K145	0.536	0.707	_YDNSLK(gl)IISNASCTTNCLAPLAK_
GAPDH	Ubiquitylation	K194	0.139	0.426	_TVDGPSGK(gl)LWR_
GAPDH	Ubiquitylation	K215	0.068	0.425	_GALQNIIPASTGAAK(gl)AVGK_
GAPDH	Ubiquitylation	K219		0.588	_GALQNIIPASTGAAKAVGK(gl)_
GAPDH	Ubiquitylation	K254	-0.005		_LEKPAK(gl)YDDIKK_
GAPDH	Ubiquitylation	K259	-0.052	0.054	_LEKPAKYDDIK(gl)K_
GAPDH	Ubiquitylation	K260	0.061	-0.269	_LEKPAKYDDIKK(gl)_
GAPDH	Ubiquitylation	K263	-0.140	0.790	_VVK(gl)QASEGPLK_
HTT	Ubiquitylation	K260		-0.128	_AFIANLK(gl)_
HTT	Phosphorylation	S419	0.595	0.531	_SGS(ph)IVELIAGGGSSCS(ph)PVLSR_
HTT	Phosphorylation	S430	0.402	0.494	_SGSIVELIAGGGSS(ph)CSPVLSR_
HTT	Phosphorylation	S432	0.317	0.640	_SGSIVELIAGGGSSCS(ph)PVLSR_
HTT	Phosphorylation	S1195	-0.222	0.264	_EKEPGEQAS(ph)VPLSPK_
HTT	Phosphorylation	S1199	-0.456	-0.970	_GKEKEPGEQASVPLS(ph)PK_
HTT	Ubiquitylation	K1402	0.169	-0.538	_VSTQLK(gl)TNLTSVTK_
HTT	Phosphorylation	S1874	1.994	1.028	_LLSPQMS(ph)GEEEDSDLAAK_
MAX	Phosphorylation	S2	0.341	-0.060	_(ac)S(ph)DNDDIEVES(ph)DEEQPR_
MAX	Phosphorylation	S2	0.510	0.568	_(ac)S(ph)DNDDIEVESDADKR_
MAX	Phosphorylation	S11	0.341	-0.060	_(ac)S(ph)DNDDIEVES(ph)DEEQPR_
MAX	Phosphorylation	S11	-0.408	0.069	_(ac)S(ph)DNDDIEVES(ph)DADKR_
MAX	Ubiquitylation	K57	-0.903	0.246	_DSVPSLQGEK(gl)ASR_
NAE1	Ubiquitylation	K6		-0.713	_(ac)AQLGK(gl)LLK_
NAE1	Ubiquitylation	K12	1.535	-0.093	_LLKEQK(gl)YDR_
NAE1	Ubiquitylation	K315	0.278	0.129	_ALK(gl)EFVAK_
NAE1	Ubiquitylation	K320		-1.602	_EFVAK(gl)EGQGNLPVR_
NAE1	Ubiquitylation	K344	-0.043	-1.015	_YIK(gl)LQNVYR_
NAE1	Ubiquitylation	K381		-1.445	_LLQSIGQAPESISEK(gl)ELK_
NAE1	Ubiquitylation	K384	-1.021	-2.156	_LLQSIGQAPESISEKELK(gl)_
NLRP1	Ubiquitylation	K297		-1.598	_SQDPLVK(gl)R_
PIGT	Ubiquitylation	K79		0.791	_ALGQLISK(gl)YSLR_
PSEN1	Phosphorylation	S313		0.844	_VSKNS(ph)KYNAESTER_
PSEN1	Ubiquitylation	K314	0.016	0.414	_NSK(gl)YNAESTER_
PSEN1	Phosphorylation	S366	-0.340	0.055	_AAVQELSS(ph)SILAGEDPEER_
PSEN1	Phosphorylation	S367	0.005	0.066	_AAVQELSSS(ph)ILAGEDPEER_
RB1	Phosphorylation	S69	-3.602	-3.397	_TAATAAAAAAEPPAPPPPPPPEEDPEQDS(ph)GPEDLPLVR_
RB1	Ubiquitylation	K97	-0.546		_LK(gl)IPDHVR_
RB1	Phosphorylation	T388	0.005	0.116	_TLQTDSIDSFETQRT(ph)PR_
RB1	Phosphorylation	T405	-0.851	-0.901	_KSNLDEEVNVIPPHT(ph)PVR_
RB1	Phosphorylation	S820		-0.019	_S(ph)PYKFPSSPLR_
RB1	Ubiquitylation	K823	-2.214		_SPYK(gl)FPSSPLR_
RB1	Phosphorylation	S827	0.824	0.111	_FPSS(ph)PLR_
RB1	Phosphorylation	S839	-0.701	-1.045	_IPGGNIYIS(ph)PLKS(ph)PYK_
RB1	Ubiquitylation	K842		-0.751	_IPGGNIYISPLK(gl)SPYK_
RB1	Phosphorylation	S843	-0.701	-0.022	_IPGGNIYIS(ph)PLKS(ph)PYK_
RB1	Ubiquitylation	K846	-2.084		_SPYK(gl)ISEGLPTPTK_
RB1	Phosphorylation	T853	0.039	-0.555	_ISEGLPT(ph)PTKM(ox)T(ph)PR_
RB1	Ubiquitylation	K856	-1.350		_ISEGLPTPTK(gl)MTPR_
RB1	Phosphorylation	T858	-0.782	0.564	_ISEGLPT(ph)PTKMT(ph)PR_
RB1	Ubiquitylation	K879	-0.187		_FQK(gl)INQMVCNSDR_
SIAH1	Ubiquitylation	K31		-1.541	_QTATALPTGTSK(gl)CPPSQR_
TP53	Ubiquitylation	K120	-0.188		_LGFLHSGTAK(gl)SVTCTYSPALNK_
TP53	Ubiquitylation	K164	0.157	-1.260	_AMAIYK(gl)QSQHMTEVVR_
TP53	Phosphorylation	S314	-0.695	-1.000	_ALPNNTSS(ph)SPQPK_
TP53	Phosphorylation	S315	-0.762	-0.959	_RALPNNTSSS(ph)PQPK_
TP53	Ubiquitylation	K320	-0.978		_ALPNNTSSSPQPKK(gl)_
TP53	Ubiquitylation	K357	-0.231	-0.823	_ELNEALELKDAQAGK(gl)EPGGSR_