RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
MYO9B	2	0.820	-0.550
GNAO1	1	1.200	-1.320	0.217			-0.334	-0.374
TSC2	1	0.810	-0.710
TSC2	1	0.810	-0.710	-0.715
RAB3GAP2	1	-2.180	3.420	0.055			1.037	0.522
RGS16	1	-2.290	4.640
RALGAPA1	1	-2.610	4.510	-0.053			0.154	0.208
ADAP2	1	-1.060	1.300	1.617
GNB2L1	1	1.000	-0.100		0.279	1.704
GNB2L1	1	1.000	-0.100	-0.278	-0.107	-0.424
RABGAP1	0	0.710	-0.120
RABGAP1	0	1.120	-0.230
HACD3	0	0.540	-0.250
HACD3	0	0.540	-0.250				0.188	0.116
RAP1GAP	0	-0.750	0.830
ARFGAP1	0	0.210	-0.220
ARFGAP1	0	0.210	-0.220
ARFGAP1	0	0.210	-0.220
RP2	0	-0.730	0.030					-0.477
ARHGEF7	0	-0.410	-0.070
ELMOD1	0	-0.870	0.870
ARHGEF6	0	0.570	-0.210
ARHGEF6	0	0.570	-0.210
SNX9	0			0.301	1.109	0.556	0.141	0.127
ARRB1	0	0.960	-0.620
RAP1GDS1	0	-0.160	0.040				-0.805	-2.521
RGS3	0	0.530	-0.710
BNIP2	0	-0.790	0.810
IQGAP1	0	-0.420	0.300		0.641	-0.402
IQGAP1	0	-0.420	0.300	1.363			0.406	0.007
TBCD	0	0.820	-0.650					1.428
TIAM2	0	-0.270	0.280
TIAM2	0	-0.190	-0.090
GNAQ	0	0.140	-0.310				0.052	0.449
RACGAP1	0	0.180	0.230				-0.308	-0.006
RACGAP1	0	1.070	-0.710				-0.308	-0.006
SNX18	0	1.820	-0.780				-2.601
ELMOD2	0	-1.280	1.240				1.392	0.691
PLCB1	0	-0.300	-0.220
RGS7	0	0.820	-0.610
LRRK2	0	0.530	-0.620	-0.240
PGAM5	0	-0.280	0.420	-1.333			0.162	-0.092

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ARFGAP1	Phosphorylation	S37	0.390	0.076	_VS(ph)GQPQSVTASSDK_
ARFGAP1	Ubiquitylation	K74	0.390	0.746	_DIELEK(gl)MK_
ARFGAP1	Phosphorylation	S144	-0.169	-0.150	_TLPS(ph)M(ox)VHRVSGQPQSVTASSDK_
ARFGAP1	Phosphorylation	S150	0.394	0.096	_VS(ph)GQPQSVTASSDK_
ARFGAP1	Ubiquitylation	K226	-0.373		_FASAAK(gl)EGATK_
ARFGAP1	Ubiquitylation	K231		-0.415	_EGATK(gl)FGSQASQK_
ARFGAP1	Phosphorylation	S343	0.527	0.767	_S(ph)PSSDSWTCADTSTER_
ARHGEF6	Phosphorylation	S225	-0.163	-0.076	_SSERPLS(ph)PK_
ARHGEF6	Phosphorylation	S415	0.662	0.947	_M(ox)S(ph)GFIYQGK_
ARHGEF6	Phosphorylation	S600		0.797	_S(ph)TAALEEDAQILK_
ARHGEF6	Phosphorylation	T601		0.797	_S(ph)TAALEEDAQILK_
ARHGEF6	Phosphorylation	S684	0.068	-0.061	_KDS(ph)IPQVLLPEEEKLIIEETR_
ARHGEF7	Phosphorylation	S50	1.374	1.424	_IKS(ph)FDSLGSQSLHTR_
ARHGEF7	Phosphorylation	S154	-0.198	0.140	_SGTLKS(ph)PPK_
ARHGEF7	Phosphorylation	S415	0.662	0.947	_M(ox)S(ph)GFIYQGK_
ARHGEF7	Phosphorylation	S600		0.797	_S(ph)TAALEEDAQILK_
ARHGEF7	Phosphorylation	T601		0.797	_S(ph)TAALEEDAQILK_
ARHGEF7	Phosphorylation	S635	0.061	-0.203	_KES(ph)APQVLLPEEEKIIVEETK_
ARRB1	Phosphorylation	S412	0.138	0.253	_GMKDDKEEEEDGTGS(ph)PQLNNR_
BNIP2	Phosphorylation	S114	1.031	0.808	_KGS(ph)ITEYTAAEEK_
ELMOD1	Ubiquitylation	K45	0.556		_ICYNTK(gl)PGASR_
ELMOD2	Ubiquitylation	K57		0.051	_IENSLTYSKNK(gl)_
GNAO1	Ubiquitylation	K29	0.529	-0.094	_NLREDGEK(gl)AAK_
GNAO1	Ubiquitylation	K92	1.569		_LK(gl)IDFGEAAR_
GNAO1	Ubiquitylation	K349	-0.221	-0.339	_NNLK(gl)ECGLY_
GNAQ	Ubiquitylation	K16	0.245		_TLESIMACCLSEEAK(gl)EAR_
GNAQ	Ubiquitylation	K102	-0.299		_IPYK(gl)YEHNK_
GNB2L1	Ubiquitylation	K38	-0.238	0.350	_DK(gl)TIIMWK_
GNB2L1	Ubiquitylation	K106	-0.290		_RFVGHTK(gl)DVLSVAFSSDNR_
GNB2L1	Ubiquitylation	K130		0.632	_TIK(gl)LWNTLGVCK_
GNB2L1	Ubiquitylation	K175	-0.554	-0.015	_LVK(gl)VWNLANCK_
GNB2L1	Ubiquitylation	K183	-0.161	-0.282	_VWNLANCK(gl)_
GNB2L1	Ubiquitylation	K185	-0.061	-0.249	_VWNLANCKLK(gl)_
GNB2L1	Ubiquitylation	K257		-0.288	_YWLCAATGPSIK(gl)_
GNB2L1	Ubiquitylation	K271	0.756	-0.007	_IIVDELK(gl)QEVISTSSK_
HACD3	Ubiquitylation	K122		0.325	_QVNITVQK(gl)K_
HACD3	Ubiquitylation	K123	-0.603	0.819	_K(gl)VSQWWER_
HACD3	Phosphorylation	S152	0.751	0.683	_WLDES(ph)DAEM(ox)ELR_
IQGAP1	Ubiquitylation	K953	0.650		_NKEQLSDMMMINK(gl)QK_
IQGAP1	Ubiquitylation	K959	0.713	0.074	_GGLK(gl)ALSK_
IQGAP1	Ubiquitylation	K1389	0.638	1.119	_TILLNTK(gl)R_
IQGAP1	Ubiquitylation	K1442	0.488		_SK(gl)SVKEDSNLTLQEK_
IQGAP1	Phosphorylation	S1443	0.392	0.273	_SKS(ph)VKEDSNLTLQEK_
IQGAP1	Ubiquitylation	K1445	0.863		_SVK(gl)EDSNLTLQEK_
MYO9B	Phosphorylation	S717		0.375	_AAGMSS(ph)PGAQSHPEELPR_
MYO9B	Phosphorylation	S1261	-1.739	-2.057	_VS(ph)PPAPGSAPETPEDK_
MYO9B	Phosphorylation	S1267	-0.114	-0.387	_VSPPAPGS(ph)APET(ph)PEDK_
MYO9B	Phosphorylation	T1271	-0.114	-0.387	_VSPPAPGS(ph)APET(ph)PEDK_
MYO9B	Phosphorylation	S1290	0.761	0.703	_VQEKPDS(ph)PGGSTQIQR_
MYO9B	Phosphorylation	S1354	0.955	0.892	_RTS(ph)FSTSDVSK_
MYO9B	Phosphorylation	S1405	1.890	1.745	_KKPGDASSLPDAGLS(ph)PGSQVDSK_
MYO9B	Phosphorylation	S1992	-0.221	0.324	_GS(ph)DEENLDSETSASTESLLEER_
PGAM5	Ubiquitylation	K88	-0.544	0.311	_NVESGEEELASK(gl)LDHYK_
PGAM5	Ubiquitylation	K141	-0.419	0.750	_LASLGLK(gl)FNK_
PLCB1	Phosphorylation	S1199	-0.494		_TPS(ph)SEELGGDIPGKEFDTPL_
PLCB1	Phosphorylation	S1200		-0.483	_TPSS(ph)EELGGDIPGKEFDTPL_
RAB3GAP2	Phosphorylation	S450		1.266	_ADFS(ph)PFGNSQGPSR_
RAB3GAP2	Ubiquitylation	K493		-0.134	_VGAFNVGK(gl)HCR_
RAB3GAP2	Ubiquitylation	K913	-0.781	-0.234	_GNTQTSK(gl)VSSLQAEPLPR_
RABGAP1	Ubiquitylation	K598		0.572	_ILITK(gl)ESPQDSAITR_
RABGAP1	Phosphorylation	T996	0.796	1.208	_EVLDEDT(ph)DEEKETLK_
RACGAP1	Ubiquitylation	K53	0.960		_TDHELGK(gl)YK_
RACGAP1	Ubiquitylation	K60	1.380		_DLLMK(gl)AETER_
RACGAP1	Ubiquitylation	K71	0.352	0.233	_SALDVK(gl)LK_
RACGAP1	Ubiquitylation	K84	0.484	0.846	_NQVDVEIK(gl)RR_
RACGAP1	Ubiquitylation	K95	-0.492		_AEADCEK(gl)LER_
RACGAP1	Ubiquitylation	K199	-2.285	-0.347	_QFVDGPPGPVK(gl)K_
RACGAP1	Ubiquitylation	K200	-0.365	-0.347	_QFVDGPPGPVKK(gl)_
RACGAP1	Phosphorylation	S203	1.255	0.831	_S(ph)IGSAVDQGNESIVAK_
RACGAP1	Ubiquitylation	K292	-0.427		_LHDFVSK(gl)TVIKPESCVPCGK_
RACGAP1	Ubiquitylation	K305	-0.770		_TVIKPESCVPCGK(gl)R_
RACGAP1	Phosphorylation	T342	-1.072	-0.919	_DRCPLPCIPTLIGT(ph)PVK_
RACGAP1	Ubiquitylation	K404	-0.200		_VK(gl)TVPLLSK_
RACGAP1	Ubiquitylation	K490	0.528		_VAQSPHTK(gl)MDVANLAK_
RACGAP1	Phosphorylation	T580	-0.839		_VSLLGPVTT(ph)PEHQLLK_
RACGAP1	Ubiquitylation	K587	-0.985		_VSLLGPVTTPEHQLLK(gl)TPSSSSLSQR_
RACGAP1	Phosphorylation	S590	-0.415	-0.021	_TPS(ph)SSSLSQR_
RACGAP1	Phosphorylation	S591		-0.217	_TPSS(ph)SSLSQR_
RACGAP1	Ubiquitylation	K604	0.953		_STLTK(gl)NTPR_
RALGAPA1	Phosphorylation	S773	-0.140	-0.182	_HFS(ph)QSEETGNEVFGALNEEQPLPR_
RALGAPA1	Phosphorylation	S796	0.419	0.578	_SS(ph)STSDILEPFTVER_
RALGAPA1	Phosphorylation	S797	0.425	0.459	_SSS(ph)TSDILEPFTVER_
RALGAPA1	Phosphorylation	S860	-0.100	-0.137	_RGS(ph)SPGSLEIPK_
RALGAPA1	Phosphorylation	S861	-0.291	0.023	_RGSS(ph)PGSLEIPK_
RALGAPA1	Phosphorylation	T1002	0.021		_SQT(ph)PSPSTLNIDHMEQK_
RAP1GAP	Phosphorylation	S484		-0.123	_AAGISLIVPGKS(ph)PTR_
RGS16	Ubiquitylation	K165		-0.674	_TLMEK(gl)DSYPR_
RGS16	Ubiquitylation	K173		-0.716	_FLK(gl)SPAYR_
RGS3	Phosphorylation	S806	-0.235	0.091	_DLPAIQES(ph)PTR_
RGS7	Phosphorylation	S241	-1.071	-0.956	_SHS(ph)PTHTPTPETKPPTEDELQQQIK_
RP2	Ubiquitylation	K273	0.275	0.425	_EVSMK(gl)AEDAQR_
SNX18	Ubiquitylation	K466		-0.225	_EYQK(gl)VGQSFR_
SNX9	Ubiquitylation	K179		0.445	_SSSYFK(gl)DSESADAGGAQR_
SNX9	Phosphorylation	S198		0.523	_ASS(ph)SSMKIPLNK_
TBCD	Ubiquitylation	K221	-0.672	-1.403	_FITRPDVK(gl)QSK_
TBCD	Ubiquitylation	K299		-0.144	_LGVK(gl)LVQR_
TBCD	Ubiquitylation	K310		-0.882	_LGLTFLK(gl)PK_
TBCD	Ubiquitylation	K453	0.010	-0.719	_ALTYDEK(gl)R_
TBCD	Ubiquitylation	K691		-1.291	_LSLSK(gl)MPFR_
TBCD	Ubiquitylation	K820	-0.089	-0.799	_DGLK(gl)AIAR_
TBCD	Ubiquitylation	K913		0.550	_IMCCVAQQASEK(gl)IDR_
TBCD	Ubiquitylation	K1076		-0.225	_LLALCK(gl)K_
TBCD	Ubiquitylation	K1077		-0.225	_LLALCK(gl)K_
TIAM2	Phosphorylation	S447	-0.196	-1.197	_YS(ph)PTLASETSPVPEAR_
TIAM2	Phosphorylation	T449		-0.489	_YSPT(ph)LASETSPVPEAR_
TIAM2	Phosphorylation	S452		-0.571	_YSPT(ph)LAS(ph)ETSPVPEAR_
TSC2	Ubiquitylation	K3		-1.397	_(ac)AK(gl)PTSKDSGLK_
TSC2	Ubiquitylation	K14		-1.297	_DSGLKEK(gl)FK_
TSC2	Ubiquitylation	K69		0.051	_MIGQICEVAK(gl)TK_
TSC2	Ubiquitylation	K71		-0.157	_MIGQICEVAKTK(gl)_
TSC2	Ubiquitylation	K258		-0.278	_ELCEPCWK(gl)LMR_
TSC2	Ubiquitylation	K634		1.610	_LGLPNK(gl)DGVVR_
TSC2	Phosphorylation	S950	-0.152	-0.529	_STS(ph)LNERPK_
TSC2	Phosphorylation	S1064		-0.927	_SLLGLDSGELQSGPESSSS(ph)PGVHVR_
TSC2	Phosphorylation	S1248		-0.604	_SNTDSAVVMEEGS(ph)PGEVPVLVEPPGLEDVEAALGMDRR_
TSC2	Phosphorylation	S1329	-0.120		_S(ph)SSSPELQTLQDILGDPGDK_
TSC2	Phosphorylation	S1331	-0.262		_SSS(ph)SPELQTLQDILGDPGDKADVGR_
TSC2	Phosphorylation	S1332		-0.063	_SSSS(ph)PELQTLQDILGDPGDK_
TSC2	Phosphorylation	S1355	0.174	0.351	_ADVGRLS(ph)PEVK_
TSC2	Phosphorylation	S1362		0.859	_S(ph)QSGTLDGESAAWSASGEDSR_
TSC2	Phosphorylation	S1364	0.522	0.550	_SQS(ph)GTLDGESAAWSASGEDSR_
TSC2	Phosphorylation	T1366	0.137		_SQSGT(ph)LDGESAAWSASGEDSR_
TSC2	Phosphorylation	S1396		0.498	_S(ph)PSGLRPR_
TSC2	Phosphorylation	S1743	0.596		_RLISS(ph)VEDFTEFV_