RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
IMPAD1	1	-0.300	0.180				1.852	-0.347
HDAC1	1	-1.980	4.450
HDAC1	1	-1.980	4.450	-0.122	0.307	0.969	0.094	0.191
MSX2	1	-0.260	0.240
HDAC2	1	-2.390	4.970
HDAC2	1	-2.390	4.970	0.187	-0.007	0.825
HOXA11	0	-0.050	0.240
CREBBP	0	0.840	-0.950				-3.889	-1.071
LRP6	0	0.210	0.050
SALL1	0			-0.080	0.063	0.213	0.247	0.009
LMBR1	0	0.990	-1.110				0.849	0.804
GLI3	0	-0.980	1.650
BMPR1A	0	0.020	-0.130
RAB23	0	1.290	-1.270				-0.106	0.952
WNT5A	0
ECE1	0	0.550	0.210				1.201	0.401
TWIST1	0	-0.640	1.150
HOXD13	0	1.230	-1.330		-0.027	0.427
HOXD13	0	1.230	-1.330					-0.993
TBX3	0	-0.160	0.160
KIAA1715	0	1.780	-1.030				-0.197	-0.120
GNAQ	0	0.140	-0.310				0.052	0.449
FLVCR1	0	1.260	-0.470
FLVCR1	0	1.260	-0.470
MSX1	0	0.420	-0.450
IFT122	0	0.590	-0.240
IFT122	0	1.590	-0.690
HAND2	0	0.000	0.600
C2CD3	0	-0.390	-0.010
CTNNB1	0	0.490	-0.230
CTNNB1	0	0.490	-0.230	-0.415			0.628	0.215

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
BMPR1A	Ubiquitylation	K232	-0.391	0.172	_TIAK(gl)QIQMVR_
BMPR1A	Ubiquitylation	K477	0.265	-0.134	_EVVCVK(gl)R_
C2CD3	Ubiquitylation	K86	-0.837		_DALQTEPK(gl)AVR_
C2CD3	Phosphorylation	S2111	-1.046	-1.043	_EGPS(ph)CPSPGPFCR_
C2CD3	Phosphorylation	S2114		-1.200	_EGPSCPS(ph)PGPFCR_
CREBBP	Phosphorylation	S2093	0.037	0.097	_SIS(ph)PSALQDLLR_
CTNNB1	Ubiquitylation	K158		-1.265	_AIPELTK(gl)LLNDEDQVVVNK_
CTNNB1	Ubiquitylation	K180	-0.546	-0.636	_AAVM(ox)VHQLSK(gl)K_
CTNNB1	Ubiquitylation	K181	-0.717	-0.729	_AAVMVHQLSKK(gl)_
CTNNB1	Phosphorylation	S191	-0.024	0.129	_S(ph)PQMVSAIVR_
CTNNB1	Ubiquitylation	K435		-0.350	_NK(gl)MM(ox)VCQVGGIEALVR_
CTNNB1	Ubiquitylation	K496		-1.262	_LHYGLPVVVK(gl)_
CTNNB1	Phosphorylation	S552	1.233	1.224	_RTS(ph)MGGTQQQFVEGVR_
CTNNB1	Phosphorylation	T556	1.275	0.995	_RTSM(ox)GGT(ph)QQQFVEGVR_
CTNNB1	Ubiquitylation	K671	-0.941	-0.934	_MSEDKPQDYK(gl)K_
ECE1	Ubiquitylation	K177		0.969	_K(gl)AQVYYR_
ECE1	Ubiquitylation	K197		-0.049	_AK(gl)PLMELIER_
ECE1	Ubiquitylation	K639		-1.498	_NSSVEAFK(gl)R_
FLVCR1	Ubiquitylation	K33	-0.251	-1.311	_GAPVGK(gl)ESVELQNGPK_
FLVCR1	Phosphorylation	S536	1.258	0.701	_AIPADS(ph)PTDQEPK_
FLVCR1	Ubiquitylation	K543	-0.643		_AIPADSPTDQEPK(gl)TVMLSK_
FLVCR1	Ubiquitylation	K549	0.772	0.078	_TVMLSK(gl)QSESAI_
GLI3	Phosphorylation	S664	-0.582	-0.252	_S(ph)PGRPTQGALGEQQDLSNTTSK_
GNAQ	Ubiquitylation	K16	0.245		_TLESIMACCLSEEAK(gl)EAR_
GNAQ	Ubiquitylation	K102	-0.299		_IPYK(gl)YEHNK_
HAND2	Ubiquitylation	K183	0.800	1.236	_K(gl)ELNEILK_
HDAC1	Ubiquitylation	K50	0.036		_K(gl)MEIYRPHK_
HDAC1	Ubiquitylation	K66		-0.593	_ANAEEMTK(gl)YHSDDYIK_
HDAC1	Ubiquitylation	K74	0.620	-1.473	_YHSDDYIK(gl)FLR_
HDAC1	Ubiquitylation	K89	0.749	-0.241	_SIRPDNMSEYSK(gl)QMQR_
HDAC1	Phosphorylation	S393	-1.133	-1.144	_M(ox)LPHAPGVQM(ox)QAIPEDAIPEES(ph)GDEDEDDPDKR_
HDAC1	Phosphorylation	S409	1.326	1.144	_ISICS(ph)SDKR_
HDAC1	Phosphorylation	S410	1.326	1.144	_ISICS(ph)SDKR_
HDAC1	Ubiquitylation	K412	0.642	-0.744	_ISICSSDK(gl)R_
HDAC2	Ubiquitylation	K50	0.036		_K(gl)MEIYRPHK_
HDAC2	Ubiquitylation	K67		-0.467	_ATAEEMTK(gl)YHSDEYIK_
HDAC2	Ubiquitylation	K89	0.749	-0.241	_SIRPDNMSEYSK(gl)QMQR_
HDAC2	Ubiquitylation	K284	0.749		_GHAK(gl)CVEVVK_
HDAC2	Phosphorylation	S394	-0.865	-0.997	_M(ox)LPHAPGVQM(ox)QAIPEDAVHEDS(ph)GDEDGEDPDKR_
HDAC2	Phosphorylation	S422	0.482	0.781	_IACDEEFS(ph)DSEDEGEGGR_
HOXA11	Ubiquitylation	K72		-0.905	_EYAIEPATK(gl)WHPR_
HOXA11	Phosphorylation	S84	0.313	0.946	_GNLAHCYS(ph)AEELVHR_
HOXD13	Ubiquitylation	K335	0.431	0.162	_VQLK(gl)ELER_
IFT122	Ubiquitylation	K804		-0.101	_MLITK(gl)QADWAR_
IFT122	Ubiquitylation	K1084	-0.071		_FQK(gl)SIELGTLTIR_
KIAA1715	Ubiquitylation	K113	-0.913	0.570	_NNEALDDLK(gl)SQR_
KIAA1715	Ubiquitylation	K130	0.026		_ILEEVMEKETYK(gl)TAK_
KIAA1715	Ubiquitylation	K133	-0.022		_TAK(gl)LILER_
KIAA1715	Phosphorylation	S177	-1.411	-2.603	_NLS(ph)PTPASPNQGPPPQVPVSPGPPK_
KIAA1715	Ubiquitylation	K355	-0.881		_LPEFSFEK(gl)R_
LRP6	Ubiquitylation	K1443		-0.221	_GK(gl)SMISSLSIMGGSSGPPYDR_
MSX1	Phosphorylation	S154		0.148	_RLS(ph)PPACTLR_
MSX2	Phosphorylation	S3	-1.986	-1.774	_(ac)AS(ph)PSKGNDLFSPDEEGPAVVAGPGPGPGGAEGAAEER_
MSX2	Phosphorylation	S5	-1.986		_AS(ph)PS(ph)KGNDLFSPDEEGPAVVAGPGPGPGGAEGAAEER_
MSX2	Phosphorylation	S63		3.351	_EAS(ph)PLPAESASAGATLRPLLLSGHGAR_
MSX2	Phosphorylation	S91	-0.783	-0.727	_EAHS(ph)PGPLVKPFETASVK_
MSX2	Phosphorylation	S123		-0.062	_SENSEDGAAWMQEPGRYS(ph)PPPR_
SALL1	Phosphorylation	S1119	-1.156	-1.235	_DTPTSHVPSGPLSSSATS(ph)PVLLPALPR_
TBX3	Ubiquitylation	K466	-2.519		_EGTAPAK(gl)VEEAR_
TWIST1	Ubiquitylation	K150		-0.176	_IQTLK(gl)LAAR_
WNT5A	Ubiquitylation	K268		-0.304	_VGDALK(gl)EK_