RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
ITPR3	2	-0.190	-0.500				1.489	1.835
ITPR1	2	-0.040	0.000				1.489	1.835
ITPR1	2	-0.040	0.000				0.768	0.643
PHF12	1	-0.980	1.740
CCDC88A	1	-0.320	0.670	0.250
CCDC88A	1	-0.160	-0.260	0.250
PLD2	1	-0.390	-0.250
SNX27	1	0.670	-0.240	-0.887			0.166	0.054
NISCH	0	0.060	0.270				-0.247	0.240
PIK3C2A	0	0.620	-0.690				-0.145	0.459
SNX1	0	-0.090	-0.590
SNX29	0	1.500	-1.180
SNX24	0	0.060	0.060
PLD1	0	-0.150	-0.140
KIF16B	0	0.020	0.820
SNX8	0	0.370	-0.460
SH3PXD2A	0	1.170	-0.770
SNX3	0	0.210	-0.270
SNX4	0	-0.190	0.740
SNX17	0	0.540	-0.070
PASK	0	-0.540	0.670
HS1BP3	0	0.300	-0.270
SNX19	0	0.820	-0.060
ITPR2	0	-1.020	0.610				0.952	0.981
SNX6	0	0.090	-0.550
SNX9	0			0.301	1.109	0.556	0.141	0.127
HIP1R	0	-0.280	1.350					0.541
PIK3C2B	0	1.410	-1.100
SBF2	0	-1.170	2.060
ARHGAP32	0	0.480	-0.120
SNX14	0	0.610	-0.670
SNX12	0	-0.600	0.290
DAB2	0	0.510	-0.470
FCHO2	0	0.030	-0.430
PITPNA	0	0.770	-0.650
SH3PXD2B	0	0.340	-0.580
SNX18	0	1.820	-0.780				-2.601
SNX2	0	-0.850	-0.050				-0.347	0.878

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ARHGAP32	Phosphorylation	S703		0.067	_S(ph)AKSEESLTSLHAVDGDSK_
ARHGAP32	Phosphorylation	S706	0.359	0.358	_SAKS(ph)EESLTSLHAVDGDSK_
ARHGAP32	Phosphorylation	S871	0.466	0.562	_LSPFFTLDLS(ph)PTEDK_
CCDC88A	Phosphorylation	S1387		-0.568	_FYDPS(ph)PPR_
CCDC88A	Phosphorylation	S1587		2.636	_VHASRPAS(ph)LDSGR_
CCDC88A	Phosphorylation	T1673	0.950	0.959	_T(ph)GSPGSEVVTLQQFLEESNK_
CCDC88A	Phosphorylation	S1675	0.884	0.947	_TGS(ph)PGSEVVTLQQFLEESNK_
CCDC88A	Phosphorylation	S1700	0.947		_S(ph)SSQENLLDEVM(ox)K_
CCDC88A	Phosphorylation	S1702	0.387	1.065	_SSS(ph)QENLLDEVMK_
CCDC88A	Phosphorylation	S1820		0.228	_RTS(ph)IHDFLTK_
DAB2	Phosphorylation	S401	-0.704	-0.722	_SSPNPFVGS(ph)PPK_
FCHO2	Ubiquitylation	K103	1.207		_EVQK(gl)YGEEQVK_
FCHO2	Ubiquitylation	K165	-1.342		_EIEK(gl)AAVK_
FCHO2	Phosphorylation	S387	0.700	-0.080	_VSIGNITLS(ph)PAISR_
FCHO2	Phosphorylation	S394	-0.115	0.075	_HS(ph)PVQMNR_
FCHO2	Phosphorylation	S403	0.527	0.628	_NLS(ph)NEELTK_
FCHO2	Phosphorylation	S478	-1.450	-2.102	_LS(ph)GINEIPRPFS(ph)PPVTSNTSPPPAAPLAR_
FCHO2	Phosphorylation	S488	-1.543	-1.955	_LSGINEIPRPFS(ph)PPVTSNT(ph)SPPPAAPLAR_
FCHO2	Phosphorylation	T492	-1.785		_LTSGKLSGINEIPRPFSPPVT(ph)S(ph)NTSPPPAAPLAR_
FCHO2	Phosphorylation	S511		0.470	_AESSSS(ph)ISSSASLSAANTPTVGVSR_
FCHO2	Ubiquitylation	K744	0.921	0.005	_LSSISEK(gl)SENGGSGSLR_
HIP1R	Ubiquitylation	K5	-0.561	-0.282	_(ac)MNSIK(gl)NVPAR_
HS1BP3	Phosphorylation	S194	0.170	0.214	_GEDAEES(ph)LEEEEALDPLGIMR_
ITPR1	Ubiquitylation	K529	1.377		_EK(gl)GGEGPLVR_
ITPR1	Phosphorylation	S934	0.318	-0.802	_KQS(ph)VFSAPSLSAGASAAEPLDR_
ITPR1	Phosphorylation	S937		-0.026	_KQSVFS(ph)APSLSAGASAAEPLDR_
ITPR1	Ubiquitylation	K1534		-0.220	_TLAMVAK(gl)GR_
ITPR1	Phosphorylation	S1598	1.165	0.362	_RDS(ph)VLAASR_
ITPR1	Phosphorylation	S1832	0.650	0.560	_VAS(ph)FSIPGSSSR_
ITPR1	Ubiquitylation	K2597		-0.819	_NK(gl)NLDWFPR_
ITPR1	Ubiquitylation	K2628		-0.010	_ILQDK(gl)LNSTMK_
ITPR1	Phosphorylation	S2670	1.132	1.555	_LGFVDVQNCIS(ph)R_
ITPR2	Ubiquitylation	K909		-0.247	_LSK(gl)FQDGGNNVMR_
ITPR2	Phosphorylation	S1160	0.443	0.895	_GGEEPIEESNILS(ph)PVQDGTK_
ITPR3	Ubiquitylation	K529	1.377		_EK(gl)GGEGPLVR_
ITPR3	Phosphorylation	S934	0.318	-0.802	_KQS(ph)VFSAPSLSAGASAAEPLDR_
ITPR3	Phosphorylation	S937		-0.026	_KQSVFS(ph)APSLSAGASAAEPLDR_
ITPR3	Ubiquitylation	K1534		-0.220	_TLAMVAK(gl)GR_
ITPR3	Phosphorylation	S1832	0.650	0.560	_VAS(ph)FSIPGSSSR_
ITPR3	Ubiquitylation	K2597		-0.819	_NK(gl)NLDWFPR_
ITPR3	Ubiquitylation	K2628		-0.010	_ILQDK(gl)LNSTMK_
ITPR3	Phosphorylation	S2670	1.132	1.555	_LGFVDVQNCIS(ph)R_
KIF16B	Ubiquitylation	K1181	-1.255		_SLGANPDDLK(gl)DPIK_
NISCH	Ubiquitylation	K942		0.996	_NSFK(gl)LSR_
NISCH	Ubiquitylation	K1009	0.484		_ASLQDLK(gl)TVVIAK_
NISCH	Phosphorylation	S1284	-0.365	-0.534	_TPS(ph)PEPVDKDFYSEFGNK_
NISCH	Ubiquitylation	K1303	0.675	0.227	_TTGK(gl)MENYELIHSSR_
PASK	Phosphorylation	S115		0.506	_GLS(ph)SGWSSPLLPAPVCNPNK_
PASK	Phosphorylation	S524	0.135	-0.412	_EEPVAIES(ph)PGQDLLGESR_
PHF12	Phosphorylation	T129		5.544	_RT(ph)T(ph)SPS(ph)SDTDLLDRS(ph)ASK_
PHF12	Phosphorylation	T130		5.544	_RT(ph)T(ph)SPS(ph)SDTDLLDRS(ph)ASK_
PHF12	Phosphorylation	S131	0.403	0.428	_TTS(ph)PSSDTDLLDR_
PHF12	Phosphorylation	S133		5.544	_RT(ph)T(ph)SPS(ph)SDTDLLDRS(ph)ASK_
PHF12	Phosphorylation	S142		5.544	_RT(ph)T(ph)SPS(ph)SDTDLLDRS(ph)ASK_
PHF12	Phosphorylation	T671	-0.003	-0.158	_VLT(ph)PPQAAGDGILATTANQR_
PHF12	Phosphorylation	S977	0.955	0.941	_GDAS(ph)LLQDGVLAEK_
PIK3C2A	Ubiquitylation	K11	-1.238	-0.061	_(ac)AQISSNSGFK(gl)ECPSSHPEPTR_
PIK3C2A	Ubiquitylation	K112		-0.649	_LLLDDSFETK(gl)K_
PIK3C2A	Ubiquitylation	K113		-0.649	_LLLDDSFETK(gl)K_
PIK3C2A	Phosphorylation	S259	1.013	0.488	_VSNLQVS(ph)PK_
PIK3C2A	Phosphorylation	S338	0.437	0.685	_SQS(ph)LNIR_
PIK3C2A	Ubiquitylation	K674		-0.351	_SPTDCAQSSK(gl)SVK_
PIK3C2A	Phosphorylation	S1553	0.393	0.261	_SADAGSFS(ph)PTPGQIGGAVK_
PIK3C2B	Ubiquitylation	K90	0.041	0.583	_TDLK(gl)LLR_
PIK3C2B	Ubiquitylation	K252		-0.155	_LNLK(gl)STYDAEMLR_
PIK3C2B	Ubiquitylation	K476		0.231	_LQLMEQK(gl)VVR_
PITPNA	Ubiquitylation	K152	-0.707		_SQVLSK(gl)DYKAEEDPAK_
PLD1	Ubiquitylation	K501		-0.155	_LTDVGSVK(gl)R_
PLD1	Ubiquitylation	K547	0.453	1.120	_SIDDVDSK(gl)LK_
PLD1	Ubiquitylation	K549		1.120	_SIDDVDSK(gl)LK_
PLD1	Ubiquitylation	K1000	-0.600		_NATIYDK(gl)VFR_
PLD2	Ubiquitylation	K80		2.298	_YTSGSK(gl)VGTCTLYSVR_
SH3PXD2A	Ubiquitylation	K282	0.122		_YVTVQPYTSQSK(gl)DEIGFEK_
SH3PXD2A	Phosphorylation	S421	0.568	0.137	_AQISS(ph)PNLR_
SH3PXD2A	Phosphorylation	S515		0.383	_RTS(ph)TLTRPK_
SH3PXD2B	Phosphorylation	S770		-3.158	_KTSS(ph)SSRPLPEVR_
SNX1	Ubiquitylation	K179	1.013	0.331	_SK(gl)QFAVK_
SNX1	Ubiquitylation	K223	-0.206		_SLIGMTKVK(gl)_
SNX12	Ubiquitylation	K61	-0.354	0.545	_TNLPIFK(gl)LK_
SNX12	Ubiquitylation	K63	-0.420		_TNLPIFKLK(gl)_
SNX14	Ubiquitylation	K11		0.472	_TMGQK(gl)LK_
SNX14	Ubiquitylation	K338	-0.059	-0.450	_LELK(gl)QIR_
SNX14	Ubiquitylation	K432		-0.660	_IAEGPYIDVVK(gl)LQTMR_
SNX14	Ubiquitylation	K656		-0.514	_NYEFLKSK(gl)_
SNX14	Ubiquitylation	K763		-0.642	_LFNDLFK(gl)NNANR_
SNX14	Ubiquitylation	K896		-0.381	_CIGEETK(gl)YESIR_
SNX17	Phosphorylation	S333		-0.381	_VTSSVPLPSGS(ph)TSSPGR_
SNX18	Ubiquitylation	K466		-0.225	_EYQK(gl)VGQSFR_
SNX19	Phosphorylation	S699	0.364	-0.194	_SEPQS(ph)PTEELSEAETESKPQTEGK_
SNX19	Ubiquitylation	K903		-0.094	_TQEQK(gl)LAAEK_
SNX2	Ubiquitylation	K116	0.089	0.156	_IESK(gl)SMSAPVIFDR_
SNX2	Phosphorylation	S119		0.336	_SMS(ph)APVIFDR_
SNX2	Ubiquitylation	K181	0.631	1.039	_SEFSVK(gl)R_
SNX2	Ubiquitylation	K218		-0.014	_SIVGMTK(gl)VK_
SNX2	Ubiquitylation	K220	-0.305		_VK(gl)VGKEDSSSTEFVEK_
SNX2	Ubiquitylation	K294	-0.176		_AADAVNK(gl)MTIK_
SNX24	Phosphorylation	S113		0.900	_AES(ph)CGSFDETESEESSK_
SNX24	Phosphorylation	S116	0.723	0.406	_AESCGS(ph)FDETESEESSK_
SNX27	Phosphorylation	S51		1.585	_SES(ph)GYGFNVR_
SNX29	Phosphorylation	S268		0.654	_VTNIIS(ph)FDDEEDEQNSGDVFK_
SNX3	Ubiquitylation	K61	-0.354	0.545	_TNLPIFK(gl)LK_
SNX3	Ubiquitylation	K63	-0.420		_TNLPIFKLK(gl)_
SNX3	Ubiquitylation	K86	-0.772		_ESK(gl)VVVPPLPGK_
SNX3	Ubiquitylation	K95		-2.631	_VVVPPLPGK(gl)AFLR_
SNX3	Ubiquitylation	K158		0.876	_SYTPSK(gl)IR_
SNX4	Ubiquitylation	K199		-0.191	_ETVNETGFQLK(gl)ADSR_
SNX4	Ubiquitylation	K205		-0.587	_LK(gl)ALNATFR_
SNX4	Ubiquitylation	K356		-0.087	_TFSLK(gl)GMTTK_
SNX4	Ubiquitylation	K361		-0.646	_GMTTK(gl)LFGQETPEQR_
SNX4	Ubiquitylation	K392		-0.896	_VLEEQINEGEQQLKSK(gl)_
SNX6	Ubiquitylation	K119	0.721	0.619	_LGEGEGSMTK(gl)EEFTK_
SNX6	Ubiquitylation	K291	0.222		_VSADEDLK(gl)LSDLLK_
SNX6	Ubiquitylation	K307		0.601	_ESQAAK(gl)DLLYR_
SNX8	Ubiquitylation	K201	0.466	0.439	_ESAQCVGDEFLNCK(gl)LATR_
SNX9	Ubiquitylation	K179		0.445	_SSSYFK(gl)DSESADAGGAQR_
SNX9	Phosphorylation	S198		0.523	_ASS(ph)SSMKIPLNK_