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Query: CCDC88A

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
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[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
CCDC88A 1 4.506 -0.320 0.670 0.250
CCDC88A 1 4.506 -0.160 -0.260 0.250

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
CCDC88A Phosphorylation S1587 2.636 _VHASRPAS(ph)LDSGR_
CCDC88A Phosphorylation S1702 0.387 1.065 _SSS(ph)QENLLDEVMK_
CCDC88A Phosphorylation T1673 0.950 0.959 _T(ph)GSPGSEVVTLQQFLEESNK_
CCDC88A Phosphorylation S1675 0.884 0.947 _TGS(ph)PGSEVVTLQQFLEESNK_
CCDC88A Phosphorylation S1820 0.228 _RTS(ph)IHDFLTK_
CCDC88A Phosphorylation S1387 -0.568 _FYDPS(ph)PPR_
CCDC88A Phosphorylation S1700 0.947 _S(ph)SSQENLLDEVM(ox)K_

Background Information for CCDC88A:


Pubmed-CCDC88A »
Uniprot-CCDC88A »
Biogrid-CCDC88A »
ProteomicsDB-CCDC88A »

Tumorportal-CCDC88A »
COSMIC-CCDC88A »
GenomeRNAi-CCDC88A »
Genecards-CCDC88A


Protein-protein Interactions for CCDC88A
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait CCDC88A Cat. description Hein, Mann, Cell 2015
Category members IP bait CETN2 Cat. description Hein, Mann, Cell 2015
Category members IP bait ERBB2 Cat. description Hein, Mann, Cell 2015
Category members IP bait PCDH1 Cat. description Hein, Mann, Cell 2015
Category members IP bait PER3 Cat. description Hein, Mann, Cell 2015
Category members IP bait SDCCAG8 Cat. description Hein, Mann, Cell 2015
Category members IP bait SGOL1 Cat. description Hein, Mann, Cell 2015
Category members IP bait TMED10 Cat. description Hein, Mann, Cell 2015
Category members IP bait VPS4B Cat. description Hein, Mann, Cell 2015
Category members IP bait WDR62 Cat. description Hein, Mann, Cell 2015
Category members IP bait BBS7 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait C6orf141 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait CCDC136 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait CTSL1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait FAM5C Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait FARP2 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait FKBP6 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait GNAI2 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait HERC2 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait IL17RA Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait IRF3 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait MAGEA1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait MLF1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait PHF15 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait RAPGEF5 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait RFTN2 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait SEC31A Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait SKP2 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait TFDP3 Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in CCDC88A
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members Hook-related_fam IPR008636 0.13
Category members t-SNARE IPR010989 0.04
Category members Prefoldin IPR009053 0


Protein complexes (CORUM database) featuring CCDC88A
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring CCDC88A
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005515 protein binding Database INF
Category members GO Category GO:0005829 cytosol Database INF
Category members GO Category GO:0003779 actin binding Database 5.41
Category members GO Category GO:0006260 DNA replication Database 3.34
Category members GO Category GO:0030027 lamellipodium Database 1.77
Category members GO Category GO:0005886 plasma membrane Database 1.21
Category members GO Category GO:0016192 vesicle-mediated transport Database 1.1
Category members GO Category GO:0008017 microtubule binding Database 0.79
Category members GO Category GO:0030032 lamellipodium assembly Database 0.66
Category members GO Category GO:0005783 endoplasmic reticulum Database 0.62
Category members GO Category GO:0035091 phosphatidylinositol binding Database 0.62
Category members GO Category GO:0016020 membrane Database 0.52
Category members GO Category GO:0032956 regulation of actin cytoskeleton organization Database 0.33
Category members GO Category GO:0005794 Golgi apparatus Database 0.27
Category members GO Category GO:0016023 cytoplasmic membrane-bounded vesicle Database 0.17
Category members GO Category GO:0006275 regulation of DNA replication Database 0.14
Category members GO Category GO:0061024 membrane organization Database 0.13
Category members GO Category GO:0043422 protein kinase B binding Database 0.12
Category members GO Category GO:0042127 regulation of cell proliferation Database 0.06
Category members GO Category GO:0001932 regulation of protein phosphorylation Database 0.04
Category members GO Category GO:0010975 regulation of neuron projection development Database 0
Category members GO Category GO:0016477 cell migration Database 0
Category members GO Category GO:0031410 cytoplasmic vesicle Database 0
Category members GO Category GO:0031929 TOR signaling Database 0
Category members GO Category GO:0032148 activation of protein kinase B activity Database 0
Category members GO Category GO:0042803 protein homodimerization activity Database 0


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