RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
CROCC	1	-0.830	1.020		2.082	0.397
SMC1B	1	-0.590	0.420	2.703	0.164	0.430	-1.824	0.661
PIBF1	1	-0.730	0.590				-2.339	-0.173
LAMB1	1	-0.210	0.090				-0.236	-0.180
STX1B	1	2.170	-0.600
VTI1B	1	0.710	-0.320
CCDC88A	1	-0.320	0.670	0.250
CCDC88A	1	-0.160	-0.260	0.250
STX6	1	-1.950	3.000
CEP131	1	-0.180	0.310
CEP131	1	-0.180	0.310
RAI14	0	-1.320	2.090				-0.130	0.093
EXOC5	0	-0.350	-0.130				0.176	0.799
STX7	0	0.300	-0.680				-0.634	0.302
STX4	0	1.010	-1.210				-0.201	-0.827
STX10	0	-0.920	0.390				1.180
GOSR2	0	-0.380	0.660
GOSR2	0	-0.380	0.660				1.115	0.357
IFT57	0	-0.190	0.050
STX12	0	0.070	0.130				-0.053	0.028
MYH11	0	0.030	0.200				-0.067	0.778
STX11	0	0.630	-0.870
STX17	0	-1.260	1.910
USO1	0	0.670	-0.440
USO1	0	0.670	-0.440	0.256			0.826	0.600
GOLGA4	0	0.490	-0.770
VTI1A	0	-0.620	0.010
CEP112	0	-0.250	0.150
STX5	0	0.900	-0.590
AIMP1	0	-0.220	0.620	-0.699			-0.552	-0.431
STX19	0	-0.630	1.440
LAMA2	0	1.640	-0.040
LAMA2	0	1.640	-0.040			-0.260
CFAP57	0	-0.130	-0.440

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
AIMP1	Ubiquitylation	K9	-0.014	0.834	_MANNDAVLK(gl)R_
AIMP1	Ubiquitylation	K35	-1.334		_EK(gl)AILQATLR_
AIMP1	Ubiquitylation	K47	0.454	0.365	_AILQATLREEKK(gl)_
AIMP1	Ubiquitylation	K312	0.335	0.619	_AQTMSNSGIK(gl)_
CCDC88A	Phosphorylation	S1387		-0.568	_FYDPS(ph)PPR_
CCDC88A	Phosphorylation	S1587		2.636	_VHASRPAS(ph)LDSGR_
CCDC88A	Phosphorylation	T1673	0.950	0.959	_T(ph)GSPGSEVVTLQQFLEESNK_
CCDC88A	Phosphorylation	S1675	0.884	0.947	_TGS(ph)PGSEVVTLQQFLEESNK_
CCDC88A	Phosphorylation	S1700	0.947		_S(ph)SSQENLLDEVM(ox)K_
CCDC88A	Phosphorylation	S1702	0.387	1.065	_SSS(ph)QENLLDEVMK_
CCDC88A	Phosphorylation	S1820		0.228	_RTS(ph)IHDFLTK_
CEP112	Phosphorylation	S241	0.446		_SS(ph)SFHDDHFLSR_
CEP112	Phosphorylation	S242		0.586	_SSS(ph)FHDDHFLSR_
CEP131	Ubiquitylation	K57	0.048		_SVSVVTGSEQKRK(gl)_
CEP131	Phosphorylation	S78	0.705	-0.865	_SNS(ph)TTQVSQPR_
CEP131	Phosphorylation	S87	0.008	-0.216	_S(ph)GSPRPTEPTDFLM(ox)LFEGSPSGK_
CEP131	Phosphorylation	S89	-0.175	-1.513	_SGS(ph)PRPTEPTDFLMLFEGS(ph)PSGK_
CEP131	Phosphorylation	T96	-0.320	-1.505	_SGSPRPTEPT(ph)DFLM(ox)LFEGSPSGK_
CEP131	Phosphorylation	S105	-1.407	-1.460	_SGS(ph)PRPTEPTDFLMLFEGS(ph)PSGK_
CEP131	Ubiquitylation	K110	-0.850		_K(gl)RPASLSTAPSEK_
CEP131	Ubiquitylation	K200	-1.567	-1.626	_APPLK(gl)SSNQTAPSLNNIIK_
CEP131	Ubiquitylation	K228	-0.499	-1.037	_AATCEGSESSGFGK(gl)LPK_
CEP131	Ubiquitylation	K320	-1.286	-0.794	_SGEGTLLDLHQQK(gl)EAAR_
CEP131	Ubiquitylation	K346	-0.472	-0.597	_AAIQELQQK(gl)R_
CEP131	Phosphorylation	S381	-0.628		_QPAQELS(ph)PTPGGTAHQALK_
CEP131	Ubiquitylation	K510	-1.847	-1.801	_FGK(gl)LSAFPEPPEDGTLLSEAK_
CEP131	Ubiquitylation	K656	-1.258	-1.548	_CEAVVAELK(gl)QEDQR_
CEP131	Ubiquitylation	K679	-0.814		_VAQAQAQHELEIKK(gl)_
CEP131	Phosphorylation	S728		1.843	_LKS(ph)LHEAELLQSDER_
CFAP57	Ubiquitylation	K1073	-0.075		_LLKEK(gl)VR_
CROCC	Phosphorylation	S512		-0.142	_RGPS(ph)PACSDSSTLALIHSALHK_
CROCC	Ubiquitylation	K674		-0.873	_QLEQLEGK(gl)R_
CROCC	Ubiquitylation	K972	-6.848	-7.739	_ASLDKELM(ox)AQK(gl)LVQAER_
CROCC	Phosphorylation	S1451		-1.104	_APS(ph)PAPRPVPGS(ph)PAR_
CROCC	Phosphorylation	S1460		-1.104	_APS(ph)PAPRPVPGS(ph)PAR_
EXOC5	Ubiquitylation	K388	1.052		_SIGTGGIQDLK(gl)ER_
GOLGA4	Phosphorylation	S41	0.285	0.228	_TSS(ph)FTEQLDEGTPNR_
GOLGA4	Phosphorylation	S93	0.361	0.494	_VPS(ph)VESLFR_
GOLGA4	Phosphorylation	S111	1.027	0.626	_SSS(ph)KESLVR_
GOLGA4	Phosphorylation	S288	-0.191	-0.383	_EENPES(ph)DGEPVVEDGTSVK_
GOSR2	Ubiquitylation	K159	-0.182	0.653	_LTLK(gl)GTQK_
IFT57	Ubiquitylation	K360		-0.753	_AAQAQLSEAK(gl)ER_
LAMA2	Ubiquitylation	K2038	-0.340		_LQAVK(gl)DKAR_
LAMA2	Ubiquitylation	K2040	-0.340		_LQAVK(gl)DKAR_
LAMB1	Ubiquitylation	K182		2.294	_SSDFGK(gl)TWGVYR_
LAMB1	Ubiquitylation	K207		1.047	_YFAYDCEASFPGISTGPMK(gl)K_
LAMB1	Ubiquitylation	K208		1.047	_YFAYDCEASFPGISTGPMK(gl)K_
LAMB1	Ubiquitylation	K239		-0.148	_ALDPAFK(gl)IEDPYSPR_
LAMB1	Ubiquitylation	K253		0.823	_IQNLLK(gl)ITNLR_
LAMB1	Ubiquitylation	K772		2.879	_SVVK(gl)TPMTDVCR_
PIBF1	Ubiquitylation	K115	1.640		_LDNQLAFQQK(gl)DASK_
PIBF1	Ubiquitylation	K387	0.601	0.118	_LK(gl)TNQEIDQLR_
PIBF1	Ubiquitylation	K490	0.032	0.033	_NLTQCQLECEK(gl)YQK_
PIBF1	Ubiquitylation	K708	0.441		_HSENSLLLTK(gl)TEPK_
RAI14	Ubiquitylation	K42	0.207		_VASLLGKK(gl)_
RAI14	Ubiquitylation	K109	-0.430		_LLQSK(gl)CPAESVDSSGK_
RAI14	Phosphorylation	T249	-0.468	-0.154	_ISQDADLKT(ph)PTKPK_
RAI14	Ubiquitylation	K323	0.500		_AEISSIRENK(gl)DR_
RAI14	Ubiquitylation	K369	0.623		_ELQDK(gl)LQAK_
RAI14	Phosphorylation	S412		0.405	_SS(ph)PSVLIHSLGK_
RAI14	Phosphorylation	S512		0.960	_LGLVS(ph)PESMDNYSHFHELR_
RAI14	Ubiquitylation	K936	-0.172		_QLQNQLAECK(gl)K_
RAI14	Ubiquitylation	K967	-0.235		_VLK(gl)QILTMCK_
SMC1B	Ubiquitylation	K529	-1.309		_K(gl)YQLAVTK_
STX10	Ubiquitylation	K126	-0.654		_EILAGK(gl)PAAQK_
STX10	Phosphorylation	S132	0.655	0.642	_S(ph)PSDLLDASAVSATSR_
STX10	Phosphorylation	S134	0.404	0.682	_SPS(ph)DLLDASAVSATSR_
STX11	Ubiquitylation	K103	0.580	1.017	_GEVIHCK(gl)LR_
STX12	Ubiquitylation	K53	0.374	1.032	_NLMSQLGTK(gl)QDSSK_
STX12	Ubiquitylation	K58	-0.103	0.738	_QDSSK(gl)LQENLQQLQHSTNQLAK_
STX12	Ubiquitylation	K127	0.260		_VSEK(gl)EKESIAR_
STX12	Ubiquitylation	K129	-0.233		_VSEKEK(gl)ESIAR_
STX12	Phosphorylation	S142	0.838	0.911	_AGSRLS(ph)AEER_
STX17	Ubiquitylation	K299	-0.023	-0.044	_LTSSCPDLPSQTDK(gl)K_
STX17	Ubiquitylation	K300	-0.023	-0.044	_LTSSCPDLPSQTDK(gl)K_
STX19	Ubiquitylation	K13	0.458		_TK(gl)EIELSR_
STX1B	Ubiquitylation	K188	0.729		_MDSQMTK(gl)QALNEIETR_
STX4	Ubiquitylation	K54	-0.229		_QTIVK(gl)LGNK_
STX4	Ubiquitylation	K58	0.607	0.599	_LGNK(gl)VQELEK_
STX4	Ubiquitylation	K102	-0.242		_LQLK(gl)AIEPQKEEADENYNSVNTR_
STX4	Ubiquitylation	K108	0.674		_AIEPQK(gl)EEADENYNSVNTR_
STX5	Ubiquitylation	K69	-0.362	-0.610	_TQEFLSACK(gl)SLQTR_
STX6	Ubiquitylation	K139	0.381		_QALLGDSGSQNWSTGTTDK(gl)YGR_
STX6	Ubiquitylation	K221	-0.371		_LDNVMKK(gl)_
STX7	Phosphorylation	S2	-0.818	0.074	_(ac)S(ph)YTPGVGGDPAQLAQR_
STX7	Phosphorylation	T4		0.208	_(ac)SYT(ph)PGVGGDPAQLAQR_
STX7	Ubiquitylation	K24	0.273	1.149	_ISSNIQK(gl)ITQCSVEIQR_
STX7	Ubiquitylation	K71	-1.063	-0.790	_ETDKYIK(gl)EFGSLPTTPSEQR_
STX7	Phosphorylation	T79	0.275	0.476	_EFGSLPTT(ph)PSEQR_
STX7	Phosphorylation	S125		0.381	_AS(ph)SRVS(ph)GSFPEDSSK_
STX7	Phosphorylation	S126	0.375	0.381	_ASS(ph)RVSGSFPEDSSK_
STX7	Phosphorylation	S129	0.553	0.627	_VS(ph)GSFPEDSSK_
STX7	Phosphorylation	S131		0.946	_VSGS(ph)FPEDSSK_
STX7	Ubiquitylation	K138	0.339	1.363	_VSGSFPEDSSK(gl)ER_
USO1	Phosphorylation	S951	-0.603	-0.232	_DLGHPVEEEDELES(ph)GDQEDEDDESEDPGKDLDHI_
VTI1A	Ubiquitylation	K176	-0.072		_LRETDANLGK(gl)SSR_
VTI1B	Ubiquitylation	K13	0.008	1.711	_(ac)ASSAASSEHFEK(gl)LHEIFR_