bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »
bioLOGIC Data

bioLOGIC Data


Exact search

Query: VTI1A

This is a cancer-associated gene according to the Sanger cancer gene census.

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
W
[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
VTI1A 0 -0.062 -0.620 0.010

PTM Sites:

Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
VTI1A Ubiquitylation K176 -0.072 _LRETDANLGK(gl)SSR_

Background Information for VTI1A:





Protein-protein Interactions for VTI1A

Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait SNAP29 Cat. description Hein, Mann, Cell 2015
Category members IP bait CLEC12A Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait HAUS1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait STX12 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait STX6 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait STX7 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait VAMP4 Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in VTI1A

Domain name Domain Description TC-NER relevance -log10(p-value)
Category members T_SNARE_dom IPR000727 0.54
Category members t-SNARE IPR010989 0.04
Category members Vesicle_trsprt_v-SNARE_N IPR007705 0


Protein complexes (CORUM database) featuring VTI1A

Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members Corum 876 SNARE complex (VAMP3, STX6, VTI1A) Database 0
Category members Corum 877 SNARE complex (VAMP4, STX6, STX16, VTI1a, VTI1b) Database 0


Categories featuring VTI1A

Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005515 protein binding Database INF
Category members GO Category GO:0016021 integral to membrane Database 7.67
Category members Human mutations Sanger_cancer_genes Sanger cancer genes Database 4.88
Category members GO Category GO:0006886 intracellular protein transport Database 2.48
Category members Pathway Pathway_1261 KEGG_SNARE_INTERACTIONS_IN_VESICULAR_TRANSPORT 0 1.52
Category members GO Category GO:0016192 vesicle-mediated transport Database 1.1
Category members GO Category GO:0016020 membrane Database 0.52
Category members GO Category GO:0031201 SNARE complex Database 0.49
Category members GO Category GO:0005794 Golgi apparatus Database 0.27
Category members GO Category GO:0042147 retrograde transport, endosome to Golgi Database 0.26
Category members GO Category GO:0005484 SNAP receptor activity Database 0.2
Category members GO Category GO:0016023 cytoplasmic membrane-bounded vesicle Database 0.17
Category members GO Category GO:0000139 Golgi membrane Database 0


© Copyright Svejstrup Laboratory 2015