RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
W

Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
SPAG9	2	-0.110	0.210	1.305
ERC1	1	3.360	-0.900				0.057	-0.132
STX6	1	-1.950	3.000
FAM109A	1	-1.780	2.690
VAMP3	0	-0.800	0.690				0.418
VAMP3	0	-0.800	0.690
VPS35	0	-0.480	0.040
VPS35	0	-0.480	0.040	-0.214	0.370	-0.544	0.601	0.416
FAM21A	0
FAM21C	0
ARFRP1	0	0.410	-0.350
STX10	0	-0.920	0.390				1.180
YKT6	0	0.160	-0.380
GOSR1	0	0.970	-1.150				1.072
GOSR1	0	1.110	0.200				1.072
PIKFYVE	0	-0.230	0.410
ARL1	0	0.440	-0.340				0.333	0.219
ARL1	0	0.440	-0.340
ARL1	0	0.440	-0.340	-0.005
VPS26A	0	-0.050	0.000	-0.098			0.542
SNX6	0	0.090	-0.550
GCC2	0	-0.080	-0.090
GCC2	0	-0.080	-0.090				-0.166	-0.559
VPS54	0	-0.440	1.050
DENND2A	0	0.810	-0.950				1.134	0.308
VPS51	0	-0.170	0.340				0.542	-0.824
VTI1A	0	-0.620	0.010
STX5	0	0.900	-0.590
RHOBTB3	0	0.440	-0.850					-0.389
BET1L	0	-0.830	0.840
WASH4P	0

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ARFRP1	Ubiquitylation	K157	-0.107	0.475	_TAFSDCTSK(gl)IGRR_
ARFRP1	Ubiquitylation	K174	0.422		_DCLTQACSALTGK(gl)GVR_
ARL1	Ubiquitylation	K157	-0.303	-0.196	_WQIFK(gl)TSATK_
BET1L	Phosphorylation	S9	-0.260	0.105	_AQS(ph)PGAVEEILDRENK_
BET1L	Ubiquitylation	K31	-0.228	0.363	_MADSLASK(gl)VTR_
BET1L	Phosphorylation	S37	1.413	1.437	_LKS(ph)LALDIDRDAEDQNR_
ERC1	Phosphorylation	S15		-0.220	_VEPSS(ph)QSPGRSPR_
ERC1	Phosphorylation	S21	1.090	0.996	_VEPSSQSPGRS(ph)PR_
FAM109A	Phosphorylation	S179	-0.489	0.209	_RPS(ph)ALPPK_
FAM109A	Phosphorylation	S213	-0.236	-0.651	_RAS(ph)APHGPLDM(ox)APFAR_
FAM21A	Phosphorylation	T5		-0.594	_T(ph)TPDQELAPASEPVWERPWSVEEIRR_
FAM21A	Phosphorylation	T6		-0.594	_T(ph)TPDQELAPASEPVWERPWSVEEIRR_
FAM21A	Phosphorylation	S288	0.363	0.241	_SRPTS(ph)FADELAAR_
FAM21A	Phosphorylation	T331		-0.774	_RT(ph)PSDDEEDNLFAPPK_
FAM21A	Phosphorylation	S333	-0.945	-0.894	_RTPS(ph)DDEEDNLFAPPK_
FAM21A	Phosphorylation	S352	1.396	1.410	_LTDEDFS(ph)PFGSGGGLFSGGK_
FAM21A	Phosphorylation	S498	0.354	0.400	_AVAS(ph)PEATVSQTDENK_
FAM21A	Phosphorylation	S728	0.212	0.155	_KETVSEAPPLLFS(ph)DEEEKEAQLGVK_
FAM21A	Phosphorylation	S802	0.579	0.140	_TVLS(ph)LFDEEEDKMEDQNIIQAPQK_
FAM21A	Phosphorylation	S1142	-0.646	0.272	_GEADLFDSGDIFSTGTGS(ph)QSVER_
FAM21A	Phosphorylation	S1144	-0.284	-0.045	_GEADLFDSGDIFSTGTGSQS(ph)VER_
FAM21C	Phosphorylation	S288	0.363	0.241	_SRPTS(ph)FADELAAR_
FAM21C	Phosphorylation	T331		-0.774	_RT(ph)PSDDEEDNLFAPPK_
FAM21C	Phosphorylation	S333	-0.945	-0.894	_RTPS(ph)DDEEDNLFAPPK_
FAM21C	Phosphorylation	S352	1.396	1.410	_LTDEDFS(ph)PFGSGGGLFSGGK_
FAM21C	Phosphorylation	S498	0.354	0.400	_AVAS(ph)PEATVSQTDENK_
FAM21C	Phosphorylation	S728	0.212	0.155	_KETVSEAPPLLFS(ph)DEEEKEAQLGVK_
FAM21C	Phosphorylation	S802	0.579	0.140	_TVLS(ph)LFDEEEDKMEDQNIIQAPQK_
FAM21C	Phosphorylation	S1142	-0.646	0.272	_GEADLFDSGDIFSTGTGS(ph)QSVER_
FAM21C	Phosphorylation	S1144	-0.284	-0.045	_GEADLFDSGDIFSTGTGSQS(ph)VER_
GCC2	Ubiquitylation	K32	-0.102	0.582	_EDLIK(gl)FAK_
GCC2	Ubiquitylation	K1492	-1.241		_SPVSSQQSLK(gl)NLR_
GOSR1	Ubiquitylation	K150	-0.654	0.537	_K(gl)DIESYK(gl)SGSGVNNR_
GOSR1	Ubiquitylation	K199	-0.128	0.352	_GMLK(gl)SIHSK_
PIKFYVE	Phosphorylation	S307	0.463	0.429	_SAS(ph)ITNLSLDR_
PIKFYVE	Phosphorylation	S1714		-0.557	_SSS(ph)PIRLPEMSGGQTNR_
PIKFYVE	Phosphorylation	S1754	-0.097	0.057	_GTAGKS(ph)PDLSSQK_
RHOBTB3	Ubiquitylation	K120	-1.955	-0.454	_DNYIPVIK(gl)R_
RHOBTB3	Ubiquitylation	K366		0.190	_LK(gl)DSGDVSNVIEK_
RHOBTB3	Ubiquitylation	K387		0.082	_TPGK(gl)INCLR_
SNX6	Ubiquitylation	K119	0.721	0.619	_LGEGEGSMTK(gl)EEFTK_
SNX6	Ubiquitylation	K291	0.222		_VSADEDLK(gl)LSDLLK_
SNX6	Ubiquitylation	K307		0.601	_ESQAAK(gl)DLLYR_
SPAG9	Ubiquitylation	K178	0.616		_TK(gl)LHQLSGSDQLESTAHSR_
SPAG9	Phosphorylation	S183	-0.041	0.617	_LHQLS(ph)GSDQLESTAHSR_
SPAG9	Phosphorylation	S185	-0.229	0.589	_LHQLSGS(ph)DQLESTAHSR_
SPAG9	Phosphorylation	S203	-0.173	0.319	_ERPIS(ph)LGIFPLPAGDGLLT(ph)PDAQK_
SPAG9	Phosphorylation	T217	1.022	0.515	_ERPIS(ph)LGIFPLPAGDGLLT(ph)PDAQK_
SPAG9	Phosphorylation	T226	2.211	2.141	_GGET(ph)PGSEQWK_
SPAG9	Phosphorylation	T275		2.752	_AT(ph)TPASTANSDVATIPTDTPLKEENEGFVK_
SPAG9	Phosphorylation	T276	2.516	2.823	_ATT(ph)PASTANSDVATIPTDTPLKEENEGFVK_
SPAG9	Phosphorylation	T292	2.076	1.667	_ATTPASTANSDVATIPTDT(ph)PLKEENEGFVK_
SPAG9	Phosphorylation	T330		0.261	_NVST(ph)GSAENEEKSEVQAIIESTPELDMDKDLSGYK_
SPAG9	Phosphorylation	S339	-0.150	0.210	_NVSTGSAENEEKS(ph)EVQAIIESTPELDMDKDLSGYK_
SPAG9	Phosphorylation	S593		0.642	_KRS(ph)STLSQLPGDK_
SPAG9	Phosphorylation	S594	0.719	0.528	_RSS(ph)TLSQLPGDK_
SPAG9	Phosphorylation	T595		0.585	_KRSST(ph)LSQLPGDK_
SPAG9	Ubiquitylation	K653	-0.358		_VQAFGWSLPQK(gl)YK_
SPAG9	Ubiquitylation	K699	-0.277		_LWCAVGVNLSGGK(gl)TR_
SPAG9	Phosphorylation	S728	0.903	-0.047	_S(ph)ASQSSLDKLDQELKEQQK_
SPAG9	Phosphorylation	S730	0.163	0.677	_SAS(ph)QSSLDKLDQELK_
SPAG9	Phosphorylation	S732	0.961	0.900	_SASQS(ph)SLDKLDQELKEQQK_
SPAG9	Phosphorylation	S733	0.740	0.712	_SASQSS(ph)LDKLDQELK_
SPAG9	Phosphorylation	S813		0.253	_ETDYPAGEDLS(ph)ESGQVDK_
SPAG9	Phosphorylation	S815		-0.037	_ETDYPAGEDLSES(ph)GQVDK_
SPAG9	Phosphorylation	T1264	-1.557	-1.235	_AGPSAQEPGSQT(ph)PLK_
STX10	Ubiquitylation	K126	-0.654		_EILAGK(gl)PAAQK_
STX10	Phosphorylation	S132	0.655	0.642	_S(ph)PSDLLDASAVSATSR_
STX10	Phosphorylation	S134	0.404	0.682	_SPS(ph)DLLDASAVSATSR_
STX5	Ubiquitylation	K69	-0.362	-0.610	_TQEFLSACK(gl)SLQTR_
STX6	Ubiquitylation	K139	0.381		_QALLGDSGSQNWSTGTTDK(gl)YGR_
STX6	Ubiquitylation	K221	-0.371		_LDNVMKK(gl)_
VAMP3	Phosphorylation	T9	0.318	-0.040	_(ac)STGPTAAT(ph)GSNR_
VAMP3	Phosphorylation	S11	0.474	0.952	_(ac)STGPTAATGS(ph)NR_
VAMP3	Ubiquitylation	K54	0.408	0.792	_VNVDK(gl)VLER_
VAMP3	Phosphorylation	S58	-0.407	0.612	_ADALQAGAS(ph)QFETSAAK_
VAMP3	Ubiquitylation	K61	0.558	0.387	_VLERDQK(gl)LSELDDR_
VAMP3	Phosphorylation	S63		0.374	_ADALQAGASQFETS(ph)AAK_
VPS26A	Ubiquitylation	K57	-0.401		_VNLAFK(gl)QPGKR_
VPS26A	Ubiquitylation	K242	-0.544		_YEIMDGAPVK(gl)GESIPIR_
VPS35	Phosphorylation	T4	-0.120		_PTT(ph)QQSPQDEQEKLLDEAIQAVK_
VPS35	Phosphorylation	S7		0.322	_PTTQQS(ph)PQDEQEKLLDEAIQAVK_
VPS35	Ubiquitylation	K659		-0.478	_TQCALAASK(gl)LLK_
VPS51	Phosphorylation	S18	-0.839		_(ac)AAAAAAGPSPGSGPGDS(ph)PEGPEGEAPER_
VPS51	Ubiquitylation	K189		0.062	_LTK(gl)CVELGAYGQAVR_
VPS54	Phosphorylation	S8		0.224	_(ac)ASSHSSS(ph)PVPQGSSSDVFFK_
VTI1A	Ubiquitylation	K176	-0.072		_LRETDANLGK(gl)SSR_
WASH4P	Ubiquitylation	K151		-0.522	_ALQEK(gl)LK_
WASH4P	Ubiquitylation	K233		0.527	_LFDAPLSISK(gl)R_
YKT6	Ubiquitylation	K103	0.656		_VLDEFSK(gl)QVDR_
YKT6	Phosphorylation	S114		-1.569	_IDWPVGS(ph)PATIHYPALDGHLSR_
YKT6	Ubiquitylation	K141	-0.073		_EADPMTK(gl)VQAELDETK_