RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
BAK1	1	0.710	0.160				-0.419	2.039
OGDH	1	-1.280	1.690	2.037	0.608	-0.247	-0.806	0.482
ATP5B	1	2.320	-1.410	0.568	0.424	-1.201
IVD	1	2.020	-1.110				1.202	0.907
ANXA1	1	1.050	-0.850				1.883
ETFDH	1	2.210	-1.290				0.855	0.214
LYN	1	-1.790	3.770
LYN	1	-1.790	3.770
VRK2	0	0.750	-0.170				-0.922
ATXN3	0	-1.590	2.440
ACSL4	0	1.120	-0.740	-0.154		-1.054	0.236	0.117
REEP1	0	-0.640	0.610
BAX	0	1.590	-1.170				0.811	0.359
MAVS	0	1.610	-0.380				-1.056	-0.630
BCL2L13	0	0.130	0.000				-0.277	0.159
SLC25A17	0	0.570	-0.020				1.280	0.162
SLC25A14	0	-0.730	0.860				0.639
FKBP8	0	-1.260	1.670				-0.042	0.441
FKBP8	0	-1.260	1.670	-1.108	-0.333	-1.072
SFXN3	0	1.200	-0.730				0.416	0.512
HTRA2	0	1.220	-0.530		0.602		-0.023	1.287
UBIAD1	0	0.280	-0.580
NDUFAF4	0	0.110	-0.020	0.631			0.602	0.312
NDUFA1	0	-0.970	0.750
NDUFA9	0	0.390	-0.190	0.726			-0.609	0.138
SORD	0	-0.520	0.450
SORD	0	0.170	0.060
PRKCA	0	0.750	-0.690				0.349	0.585
PRKCA	0	0.750	-0.690
OXA1L	0	-0.020	0.200				0.321	0.047
FLVCR1	0	1.260	-0.470
FLVCR1	0	1.260	-0.470
NDUFB6	0	-1.020	1.120					-0.183
UQCRFS1	0	0.580	-0.380
UQCRFS1	0	0.580	-0.380		0.455	-1.390
BCL2L1	0
BCL2	0	0.910	-0.740
BNIP3	0	0.610	-0.650
SLC25A10	0	-0.310	0.760		-0.452	-0.345	0.324	0.222
SLC25A10	0	-0.030	0.190		-0.452	-0.345	0.324	0.222
SLC25A10	0	-0.310	0.760				0.553	1.092
SLC25A10	0	-0.030	0.190				0.553	1.092
SFXN4	0						0.138	0.345
NDUFA13	0	1.140	-0.760	-1.093			-0.874	-0.460
YJEFN3	0			-1.093			-0.874	-0.460
MT-ND1	0						0.684	0.420
COX20	0	-0.990	1.970				-0.849	0.100
NDUFS3	0	0.810	-0.670	0.563	-0.004	-0.643	0.049	-0.093
ACAD11	0	1.060	-0.600	0.794	-1.471	-0.351	0.901	0.488

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ACAD11	Phosphorylation	S181	-7.312	-3.426	_RQVS(ph)TWTK_
ACAD11	Phosphorylation	T182	-7.312	-3.426	_RQVS(ph)TWTK_
ACSL4	Ubiquitylation	K49	-1.745		_AK(gl)PTSDKPGSPYR_
ACSL4	Ubiquitylation	K54	-1.457		_AKPTSDK(gl)PGSPYR_
ACSL4	Ubiquitylation	K354	0.109	0.988	_IGYSSPLTLSDQSSK(gl)IK_
ACSL4	Ubiquitylation	K356	0.153	0.800	_IGYSSPLTLSDQSSKIK(gl)_
ACSL4	Ubiquitylation	K500	-1.017	-0.639	_LK(gl)DWQEGGYTINDKPNPR_
ACSL4	Ubiquitylation	K621	0.455	0.184	_SDQSYVISFVVPNQK(gl)R_
ACSL4	Ubiquitylation	K661	0.291	0.519	_EAANAM(ox)K(gl)LER_
ACSL4	Ubiquitylation	K670	-0.058	-0.343	_FEIPIK(gl)VR_
ACSL4	Ubiquitylation	K702	0.575		_NHYLK(gl)DIER_
ATP5B	Ubiquitylation	K55		-1.344	_DYAAQTSPSPK(gl)AGAATGR_
ATP5B	Ubiquitylation	K426		-0.601	_GVQK(gl)ILQDYK_
ATP5B	Phosphorylation	S465		-1.223	_FLS(ph)QPFQVAEVFTGHMGK_
ATXN3	Ubiquitylation	K190	-0.322		_VQQM(ox)HRPK(gl)LIGEELAQLK_
ATXN3	Ubiquitylation	K200	0.446	0.812	_LIGEELAQLK(gl)EQR_
ATXN3	Ubiquitylation	K206	0.142	0.741	_VHK(gl)TDLER_
ATXN3	Ubiquitylation	K291	0.025	0.575	_EAYFEK(gl)QQQK_
BAX	Ubiquitylation	K57		-1.174	_MGGEAPELALDPVPQDASTK(gl)K_
BAX	Ubiquitylation	K58	-1.718	-1.174	_MGGEAPELALDPVPQDASTKK(gl)_
BAX	Ubiquitylation	K64	0.708	1.306	_LSECLK(gl)R_
BCL2	Ubiquitylation	K22	1.480		_YIHYK(gl)LSQR_
BCL2L1	Ubiquitylation	K87	0.026		_EVIPMAAVK(gl)QALR_
BCL2L13	Phosphorylation	S370	0.684	0.261	_S(ph)SPATSLFVELDEEEVK_
BCL2L13	Phosphorylation	S371	0.881	0.261	_S(ph)SPATSLFVELDEEEVK_
BCL2L13	Phosphorylation	S420		0.033	_EES(ph)LVEELS(ph)PASEK_
BCL2L13	Phosphorylation	S426	1.045	1.136	_EESLVEELS(ph)PASEK_
BNIP3	Phosphorylation	S136	0.383	0.514	_ASETDTHS(ph)IGEK_
BNIP3	Ubiquitylation	K161	0.164	-0.368	_EVESILK(gl)K_
FKBP8	Ubiquitylation	K217	-0.362	-0.356	_VK(gl)CLNNLAASQLK_
FKBP8	Ubiquitylation	K258		-0.292	_GK(gl)VLAQQGEYSEAIPILR_
FKBP8	Ubiquitylation	K278	-1.013	-0.590	_AALK(gl)LEPSNK_
FKBP8	Ubiquitylation	K284	-0.086		_LEPSNK(gl)TIHAELSK_
FLVCR1	Ubiquitylation	K33	-0.251	-1.311	_GAPVGK(gl)ESVELQNGPK_
FLVCR1	Phosphorylation	S536	1.258	0.701	_AIPADS(ph)PTDQEPK_
FLVCR1	Ubiquitylation	K543	-0.643		_AIPADSPTDQEPK(gl)TVMLSK_
FLVCR1	Ubiquitylation	K549	0.772	0.078	_TVMLSK(gl)QSESAI_
HTRA2	Ubiquitylation	K237	-1.868	-0.270	_IQTK(gl)EPLPTLPLGR_
IVD	Ubiquitylation	K75		0.830	_SNEFK(gl)NLR_
IVD	Phosphorylation	T211	0.073	0.216	_T(ph)DLAAVPASR_
LYN	Ubiquitylation	K20	-0.592		_GKDSLSDDGVDLK(gl)TQPVR_
LYN	Ubiquitylation	K40	0.100		_DPTSNK(gl)QQRPVPESQLLPGQR_
LYN	Phosphorylation	S104	0.944	0.841	_DSLS(ph)DDGVDLK_
LYN	Ubiquitylation	K213	0.441		_HYQK(gl)QADGLCR_
LYN	Ubiquitylation	K477	-0.191		_VENCPDELYDIMK(gl)MCWK_
MAVS	Phosphorylation	S152	0.146	-0.466	_EKEPSYPMPVQETQAPES(ph)PGENSEQALQTLSPR_
MAVS	Phosphorylation	S165		-0.888	_EKEPSYPMPVQETQAPESPGENSEQALQTLS(ph)PR_
MAVS	Phosphorylation	S222	1.349	1.006	_GPVS(ph)PSVSFQPLAR_
MAVS	Ubiquitylation	K362	0.082		_AGMVPSK(gl)VPTSMVLTK_
NDUFA1	Ubiquitylation	K64	-2.721	-0.183	_YYVSK(gl)GLENID_
NDUFA13	Ubiquitylation	K22		-2.069	_VKQDMPPPGGYGPIDYK(gl)R_
NDUFA13	Ubiquitylation	K105		-1.894	_DVPDWK(gl)VGESVFHTTR_
NDUFAF4	Ubiquitylation	K51		-1.374	_EQISLYPEVK(gl)GEIAR_
NDUFB6	Ubiquitylation	K9	-2.576	-0.600	_TGYTPDEK(gl)LR_
NDUFB6	Ubiquitylation	K54	-1.501	-0.723	_FLENK(gl)SPWR_
OXA1L	Ubiquitylation	K267		0.097	_ASSEMALYQK(gl)K_
OXA1L	Ubiquitylation	K268		0.097	_ASSEMALYQK(gl)K_
OXA1L	Ubiquitylation	K403		0.452	_TVLK(gl)IPQR_
PRKCA	Phosphorylation	S10	-0.650	0.036	_(ac)ADVFPGNDS(ph)TASQDVANR_
PRKCA	Phosphorylation	S13	-1.038	0.335	_(ac)ADVFPGNDSTAS(ph)QDVANR_
PRKCA	Phosphorylation	S226	0.693	0.415	_STLNPQWNES(ph)FTFK_
PRKCA	Ubiquitylation	K316	-0.522	-0.535	_LGPAGNK(gl)VISPSEDR_
REEP1	Phosphorylation	S152	0.320	0.630	_SFS(ph)MQDLTTIR_
SFXN4	Phosphorylation	S2	-0.420	0.939	_(ac)S(ph)LEQEEETQPGR_
SFXN4	Ubiquitylation	K90	-1.354	-0.219	_IQEAWK(gl)R_
SFXN4	Ubiquitylation	K160	-4.103	-0.514	_SYTCK(gl)PLER_
SLC25A17	Ubiquitylation	K42		0.106	_LQVDEK(gl)R_
SLC25A17	Ubiquitylation	K44	-0.499		_LQVDEKRK(gl)_
SLC25A17	Ubiquitylation	K130		-0.564	_LK(gl)LQGAK_
SLC25A17	Ubiquitylation	K135		-0.478	_LQGAK(gl)FR_
SORD	Ubiquitylation	K107		-0.082	_ENDEFCK(gl)MGR_
SORD	Ubiquitylation	K319		-1.308	_SVNVK(gl)PLVTHR_
UBIAD1	Ubiquitylation	K307	-3.291	0.308	_SQAFNK(gl)LPQR_
UQCRFS1	Ubiquitylation	K110		-0.915	_RLEVLDSTK(gl)SSR_
UQCRFS1	Ubiquitylation	K172		-0.698	_LSDIPEGK(gl)NMAFK_
YJEFN3	Ubiquitylation	K22		-2.069	_VKQDMPPPGGYGPIDYK(gl)R_
YJEFN3	Ubiquitylation	K105		-1.894	_DVPDWK(gl)VGESVFHTTR_