bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »

bioLOGIC Data

bioLOGIC Data


Exact search


Query: IVD

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
W
[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
IVD 1 3.228 2.020 -1.110 1.202 0.907

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
IVD Ubiquitylation K75 0.830 _SNEFK(gl)NLR_
IVD Phosphorylation T211 0.073 0.216 _T(ph)DLAAVPASR_

Background Information for IVD:


Pubmed-IVD »
Uniprot-IVD »
Biogrid-IVD »
ProteomicsDB-IVD »

Tumorportal-IVD »
COSMIC-IVD »
GenomeRNAi-IVD »
Genecards-IVD


Protein-protein Interactions for IVD
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait KIR3DL2 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait STK11 Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in IVD
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members Acyl-CoA_Oxase/DH_cen-dom IPR006091 0
Category members AcylCo_DH/oxidase_C IPR009075 0
Category members AcylCoA_DH/oxidase_NM_dom IPR009100 0
Category members Acyl-CoA_DH_C_dom IPR013107 0
Category members AcylCoA_DH/ox_N IPR013786 0


Protein complexes (CORUM database) featuring IVD
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring IVD
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members DDR Literature pubmedid:19647519 Paulsen et al., 2009 siRNA screen for g-H2A.x phosphorylation 3.6
Category members GO Category GO:0005739 mitochondrion Database 1.67
Category members GO Category GO:0005759 mitochondrial matrix Database 0.59
Category members GO Category GO:0044281 small molecule metabolic process Database 0.35
Category members GO Category GO:0050660 flavin adenine dinucleotide binding Database 0.12
Category members Pathway Pathway_19 KEGG_VALINE_LEUCINE_AND_ISOLEUCINE_DEGRADATION 0 0.04
Category members GO Category GO:0034641 cellular nitrogen compound metabolic process Database 0.01
Category members Pathway Pathway_17 REACTOME_METABOLISM_OF_AMINO_ACIDS_AND_DERIVATIVES 0 0
Category members Pathway Pathway_18 REACTOME_BRANCHED_CHAIN_AMINO_ACID_CATABOLISM 0 0
Category members GO Category GO:0003995 acyl-CoA dehydrogenase activity Database 0
Category members GO Category GO:0006552 leucine catabolic process Database 0
Category members GO Category GO:0008152 metabolic process Database 0
Category members GO Category GO:0009083 branched-chain amino acid catabolic process Database 0
Category members GO Category GO:0016491 oxidoreductase activity Database 0
Category members GO Category GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors Database 0
Category members GO Category GO:0031966 mitochondrial membrane Database 0
Category members GO Category GO:0055114 oxidation-reduction process Database 0


.

© Copyright Svejstrup Laboratory 2015