RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
GSK3B	2	1.020	-0.870				-1.128	1.091
PAFAH1B1	1	0.820	-0.330				1.632	0.711
OGDH	1	-1.280	1.690	2.037	0.608	-0.247	-0.806	0.482
YWHAE	1	0.440	-0.380		1.095	-0.160
YWHAE	1	0.440	-0.380	1.129			0.621	0.321
BBS2	1	-0.810	0.820
PLXNA3	1	-0.130	0.400
UQCRQ	1	-2.130	4.340				0.883	0.707
HDAC2	1	-2.390	4.970
HDAC2	1	-2.390	4.970	0.187	-0.007	0.825
NME2	0	0.040	0.180	-0.783	0.303	-0.394	-0.805	-0.898
XRCC1	0	-0.010	0.060	-0.364	-0.736	-0.059	0.224	0.061
NCOA1	0	1.240	-0.460
PTPRS	0	0.140	0.270				-0.194	0.365
SRF	0	0.670	-1.020
DLX2	0	-0.930	1.950		-1.286	0.204
FGF13	0	1.100	-1.060
NKX2-1	0	-0.730	0.480		0.174	0.236
NKX2-1	0	-0.730	0.480				-0.123
LEF1	0	-0.710	0.790	-0.741
BBS4	0	0.310	0.160
DLX1	0	-1.110	0.780
DLX1	0	-1.110	0.780		-1.286	0.204
EPHA5	0	-0.280	0.790
CDK5	0	-1.100	1.740	-0.236			1.063	0.312
TSC1	0	1.100	-0.150
ZEB2	0	-0.420	1.170		0.364	0.973
ID4	0	0.670	-0.690
NME1	0	0.510	-0.420				0.232	0.470
NME1	0	0.510	-0.420	-0.783	0.303	-0.394	-0.805	-0.898

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
BBS2	Ubiquitylation	K231		-0.482	_FGYALSNGTVGVYDK(gl)TSR_
BBS2	Ubiquitylation	K360		-1.721	_NYEENAK(gl)AELASPLNEADGHR_
BBS2	Phosphorylation	S365		2.366	_AELAS(ph)PLNEADGHR_
BBS2	Ubiquitylation	K659		-0.582	_DLLNGYK(gl)IR_
BBS4	Ubiquitylation	K28		-0.615	_TQFPVSTESQK(gl)PR_
BBS4	Ubiquitylation	K302		-2.331	_YVAAISCLK(gl)R_
BBS4	Ubiquitylation	K408		-2.242	_NALAQYQEMEK(gl)K_
BBS4	Ubiquitylation	K409		-2.242	_NALAQYQEMEK(gl)K_
CDK5	Ubiquitylation	K56	0.606	0.237	_EICLLK(gl)ELK_
DLX1	Phosphorylation	S9	0.286	0.248	_(ac)M(ox)TM(ox)TTM(ox)PES(ph)LNSPVSGK_
DLX1	Phosphorylation	S225		-0.821	_SGEIPSEQHPGAS(ph)AS(ph)PPCASPPVSAPASWDFGVPQR_
DLX1	Phosphorylation	S227		-1.137	_SGEIPSEQHPGASAS(ph)PPCAS(ph)PPVSAPASWDFGVPQR_
DLX1	Phosphorylation	S232		-1.137	_SGEIPSEQHPGASAS(ph)PPCAS(ph)PPVSAPASWDFGVPQR_
DLX2	Phosphorylation	S225		-0.821	_SGEIPSEQHPGAS(ph)AS(ph)PPCASPPVSAPASWDFGVPQR_
DLX2	Phosphorylation	S227		-1.137	_SGEIPSEQHPGASAS(ph)PPCAS(ph)PPVSAPASWDFGVPQR_
DLX2	Phosphorylation	S232		-1.137	_SGEIPSEQHPGASAS(ph)PPCAS(ph)PPVSAPASWDFGVPQR_
EPHA5	Ubiquitylation	K657	0.533		_LKLPGK(gl)R_
FGF13	Ubiquitylation	K57	-0.429	0.063	_AK(gl)CHEIFCCPLK_
FGF13	Phosphorylation	S224	0.090	0.488	_VAMYKEPS(ph)LHDLTEFSR_
GSK3B	Phosphorylation	S9	-0.483	0.010	_TTS(ph)FAESCKPVQQPSAFGSMK_
GSK3B	Ubiquitylation	K85		-0.204	_LCDSGELVAIK(gl)K_
GSK3B	Ubiquitylation	K86		-0.204	_LCDSGELVAIK(gl)K_
GSK3B	Phosphorylation	S215	0.296	0.477	_GEPNVS(ph)YICSR_
GSK3B	Phosphorylation	Y216	0.356	0.376	_GEPNVSY(ph)ICSR_
GSK3B	Phosphorylation	T390	2.800	2.527	_IQAAAST(ph)PTNATAASDANTGDR_
HDAC2	Ubiquitylation	K50	0.036		_K(gl)MEIYRPHK_
HDAC2	Ubiquitylation	K67		-0.467	_ATAEEMTK(gl)YHSDEYIK_
HDAC2	Ubiquitylation	K89	0.749	-0.241	_SIRPDNMSEYSK(gl)QMQR_
HDAC2	Ubiquitylation	K284	0.749		_GHAK(gl)CVEVVK_
HDAC2	Phosphorylation	S394	-0.865	-0.997	_M(ox)LPHAPGVQM(ox)QAIPEDAVHEDS(ph)GDEDGEDPDKR_
HDAC2	Phosphorylation	S422	0.482	0.781	_IACDEEFS(ph)DSEDEGEGGR_
ID4	Phosphorylation	S5	-0.437	-0.234	_AVS(ph)PVRPSGR_
LEF1	Ubiquitylation	K88	-0.867	-0.222	_ESLEEAAK(gl)R_
NCOA1	Phosphorylation	S22	0.503	0.810	_KGS(ph)PCDTLASSTEK_
NME1	Ubiquitylation	K37	0.192	0.188	_TFIAIK(gl)PDGVQR_
NME1	Ubiquitylation	K51	-0.368	0.345	_GLVGEIIK(gl)R_
NME1	Ubiquitylation	K56	-0.240		_FEQK(gl)GFR_
NME1	Ubiquitylation	K125	-0.693	-0.414	_VMLGETNPADSK(gl)PGTIR_
NME1	Ubiquitylation	K264	0.448	0.582	_NIIHGSDSVK(gl)SAEK_
NME2	Ubiquitylation	K37	0.192	0.188	_TFIAIK(gl)PDGVQR_
NME2	Ubiquitylation	K51	-0.368	0.345	_GLVGEIIK(gl)R_
NME2	Ubiquitylation	K56	-0.240		_FEQK(gl)GFR_
NME2	Ubiquitylation	K125	-0.693	-0.414	_VMLGETNPADSK(gl)PGTIR_
NME2	Ubiquitylation	K264	0.448	0.582	_NIIHGSDSVK(gl)SAEK_
PAFAH1B1	Ubiquitylation	K76	-0.530		_LNEAK(gl)EEFTSGGPLGQK_
PLXNA3	Ubiquitylation	K622		2.255	_LQLLSK(gl)ETGVR_
PLXNA3	Ubiquitylation	K1328	-1.042	-1.740	_ELDTPPNVEK(gl)ALR_
PTPRS	Ubiquitylation	K1650	-0.595	-1.027	_LLASSK(gl)AHTSR_
PTPRS	Ubiquitylation	K1665	-0.790		_FISANLPCNK(gl)FK_
SRF	Phosphorylation	S224	-0.512	-0.458	_ALIQTCLNSPDS(ph)PPR_
TSC1	Phosphorylation	S505	0.141	0.350	_GGFDS(ph)PFYR_
XRCC1	Ubiquitylation	K143	0.287	0.218	_VK(gl)IVCSQPYSK_
XRCC1	Ubiquitylation	K183	0.349		_VTVTK(gl)LGQFR_
XRCC1	Phosphorylation	S240	-1.676		_TSPVTASDPAGPSYAAATLQASSAASSAS(ph)PVSR_
XRCC1	Phosphorylation	T249	-0.792	-0.550	_AIGST(ph)SKPQESPKGK_
XRCC1	Phosphorylation	S255	-1.174	-0.626	_AIGSTSKPQES(ph)PK_
XRCC1	Phosphorylation	S280	0.316	0.913	_KTPSKPPAQLS(ph)PSVPK_
XRCC1	Phosphorylation	S282		0.731	_KTPSKPPAQLS(ph)PSVPK_
XRCC1	Ubiquitylation	K355	0.580		_DK(gl)ALELGAK_
XRCC1	Phosphorylation	S460	-1.302	-0.863	_TKPTQAAGPS(ph)SPQKPPT(ph)PEETK_
XRCC1	Phosphorylation	S461	-2.007	-4.025	_TKPTQAAGPSS(ph)PQKPPTPEETK_
XRCC1	Phosphorylation	T467	-1.175	-1.061	_TKPTQAAGPSS(ph)PQKPPT(ph)PEETK_
XRCC1	Phosphorylation	T471	-1.661		_TKPTQAAGPSS(ph)PQKPPT(ph)PEETK_
XRCC1	Phosphorylation	S475	-0.043	0.033	_AAS(ph)PVLQEDIDIEGVQSEGQDNGAEDSGDTEDELRR_
YWHAE	Ubiquitylation	K38	0.710	1.822	_YDEMVESMK(gl)K_
YWHAE	Ubiquitylation	K39		1.734	_YDEMVESMKK(gl)_
YWHAE	Ubiquitylation	K60	0.554	1.732	_NLLSVAYK(gl)NVIGAR_
YWHAE	Ubiquitylation	K83	0.375	0.643	_IISSIEQKEENK(gl)GGEDKLK_
YWHAE	Ubiquitylation	K90	1.103		_GGEDKLK(gl)MIR_
YWHAE	Ubiquitylation	K116	-0.289		_LICCDILDVLDK(gl)HLIPAANTGESK_
YWHAE	Ubiquitylation	K133	0.653	1.264	_VFYYK(gl)M(ox)K_
YWHAE	Ubiquitylation	K152	0.031	0.601	_K(gl)EAAENSLVAYK_
YWHAE	Phosphorylation	S210	0.534	0.506	_AAFDDAIAELDTLS(ph)EESYK_
YWHAE	Phosphorylation	S213		0.541	_AAFDDAIAELDTLSEES(ph)YK_
ZEB2	Phosphorylation	S1124		0.491	_AYLQSITPQGYSDS(ph)EERESMPR_