RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
W

Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
LMNB1	2	-1.420	1.780	0.831	-0.150	0.195	1.319	0.831
HIST1H1A	2	-0.420	-0.230
HIST1H1A	2	-0.420	-0.230
HIST1H1D	2	1.110	-0.790	-2.077	-1.246	-0.337	-1.149	-1.118
HNRNPU	2	0.060	-0.680	-0.343	-0.601	-0.104
HNRNPU	2	0.060	-0.680		-0.369	0.066	-0.683	-0.285
YWHAE	1	0.440	-0.380		1.095	-0.160
YWHAE	1	0.440	-0.380	1.129			0.621	0.321
LSM8	1	-1.730	3.040				-0.554	-0.140
ILF3	1	-2.400	4.920
ILF3	1	-2.400	4.920	-3.271	-0.998	-0.391	-0.709	-0.019
ILF3	1	-2.400	4.920	-0.465	-5.193		-2.940	-2.419
YWHAQ	1	-0.260	0.670	0.606	0.369	-0.163	0.594	0.478
PDCD4	1	-0.500	1.310	0.149
PDCD4	1	-0.500	1.310
CKB	1	-0.450	0.590	-0.504	1.724	-1.750
RBL2	0	0.890	-0.800
HNRNPL	0	-0.170	0.370	-0.430	-0.816	-0.279	-0.040	0.131
C1QBP	0	1.100	-0.820		0.115	-0.813	0.337	0.378
C1QBP	0	1.100	-0.820	-0.487
DDX39A	0	-0.780	0.900
DDX39A	0	-0.780	0.900	0.154	-0.871	-0.414	-0.071	0.085
IQGAP1	0	-0.420	0.300		0.641	-0.402
IQGAP1	0	-0.420	0.300	1.363			0.406	0.007
HDGF	0	-0.810	0.160
HDGF	0	-0.810	0.160
HNRNPK	0	-0.160	0.450	-0.273	-1.081	-0.609	-0.231	-0.195
HNRNPK	0	-0.160	0.450
API5	0	0.700	-0.330	-0.188	1.122	-2.174	0.074	0.305
SNRPD1	0	-0.780	0.750	0.034	-0.359	0.355	-1.109	-0.252
LEMD3	0	-0.990	1.690				0.740	0.250

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
API5	Ubiquitylation	K36	-0.455		_DAYQVILDGVK(gl)GGTK_
API5	Ubiquitylation	K40	-0.455		_DAYQVILDGVK(gl)GGTK_
API5	Ubiquitylation	K153		1.162	_AIK(gl)FLSTK_
API5	Ubiquitylation	K180	0.817		_EVEELILTESK(gl)K_
API5	Ubiquitylation	K181	0.817		_EVEELILTESK(gl)K_
API5	Phosphorylation	S464	0.169	0.234	_RASEDTTSGS(ph)PPK_
CKB	Phosphorylation	S4	-0.350	0.063	_PFS(ph)NSHNALK_
CKB	Ubiquitylation	K11	-1.422		_PFSNSHNALK(gl)LR_
CKB	Phosphorylation	T35	0.267	0.117	_VLT(ph)PELYAELR_
CKB	Phosphorylation	S199		0.222	_SMTEAEQQQLIDDHFLFDKPVS(ph)PLLLASGMAR_
CKB	Ubiquitylation	K242	0.278	0.626	_VISMQK(gl)GGNMK_
CKB	Ubiquitylation	K247	-0.478	0.094	_GGNM(ox)K(gl)EVFTR_
CKB	Ubiquitylation	K298	0.091		_AGVHIK(gl)LPNLGK_
CKB	Ubiquitylation	K304	-0.362	-1.352	_LPNLGK(gl)HEK_
CKB	Ubiquitylation	K307	-0.294		_LPNLGKHEK(gl)_
CKB	Ubiquitylation	K313	0.215	0.481	_FSEVLK(gl)R_
CKB	Ubiquitylation	K381	-0.423	-0.722	_LEQGQAIDDLMPAQK(gl)_
DDX39A	Phosphorylation	Y56	-1.836	-1.799	_AEQDVENDLLDY(ph)DEEEEPQAPQESTPAPPK_
DDX39A	Phosphorylation	S68	-0.291	-0.639	_(ac)AEQDVENDLLDYDEEEEPQAPQES(ph)TPAPPKK_
DDX39A	Phosphorylation	T69		-0.639	_(ac)AEQDVENDLLDYDEEEEPQAPQES(ph)TPAPPKK_
DDX39A	Ubiquitylation	K78	0.624		_DIK(gl)GSYVSIHSSGFR_
DDX39A	Ubiquitylation	K205	-0.507		_K(gl)NCPHVVVGTPGR_
DDX39A	Phosphorylation	T214	0.055	-0.353	_NCPHVVVGT(ph)PGR_
DDX39A	Phosphorylation	S226	1.288	0.791	_NRS(ph)FSLK_
DDX39A	Ubiquitylation	K230	0.720	0.666	_SFSLK(gl)NVK_
HDGF	Ubiquitylation	K11	0.744		_EYK(gl)CGDLVFAK_
HDGF	Ubiquitylation	K39	0.518		_IDEMPEAAVK(gl)STANK_
HDGF	Phosphorylation	S148	0.175	0.116	_KGNAEGS(ph)SDEEGKLVIDEPAK_
HDGF	Phosphorylation	S149	0.156	-0.009	_GNAEGSS(ph)DEEGKLVIDEPAKEK_
HDGF	Phosphorylation	S181	0.232	0.201	_RAGDLLEDS(ph)PK_
HIST1H1A	Ubiquitylation	K67	1.076	1.046	_K(gl)ALAAAGYDVEKNNSR_
HIST1H1A	Ubiquitylation	K75	1.615	2.152	_KALAAAGYDVEK(gl)NNSR_
HIST1H1A	Ubiquitylation	K93	-0.158	0.945	_SLVSK(gl)GTLVQTK_
HIST1H1A	Ubiquitylation	K97	0.052	3.473	_GTLVQTK(gl)GTGASGSFK_
HIST1H1A	Ubiquitylation	K106	0.973	0.893	_GTGASGSFK(gl)LNKK_
HIST1H1D	Phosphorylation	S2	-1.308	-1.220	_S(ph)ETAPAAPAAPAPAEK_
HIST1H1D	Phosphorylation	T4	-1.741	-0.745	_(ac)SET(ph)APAAPAAPAPAEK_
HIST1H1D	Phosphorylation	T18	-2.773	-1.986	_(ac)S(ph)ETAPAAPAAPAPAEKT(ph)PVKK_
HIST1H1D	Phosphorylation	S36		-0.319	_RKAS(ph)GPPVSELITK_
HNRNPK	Ubiquitylation	K34	-0.398	0.033	_RPAEDMEEEQAFK(gl)R_
HNRNPK	Ubiquitylation	K52	1.081	1.257	_ILLQSK(gl)NAGAVIGK_
HNRNPK	Ubiquitylation	K60	0.068		_NAGAVIGK(gl)GGK(gl)NIK_
HNRNPK	Ubiquitylation	K63	-0.065	0.839	_NAGAVIGK(gl)GGK(gl)NIK_
HNRNPK	Phosphorylation	S116	0.499	0.377	_IIPTLEEGLQLPS(ph)PTATSQLPLESDAVECLNYQHYK_
HNRNPK	Phosphorylation	T118	0.679		_KIIPTLEEGLQLPSPT(ph)ATSQLPLESDAVECLNYQHYK_
HNRNPK	Phosphorylation	T120		0.365	_IIPTLEEGLQLPSPTAT(ph)SQLPLESDAVECLNYQHYK_
HNRNPK	Ubiquitylation	K163	0.329		_LLIHQSLAGGIIGVK(gl)GAK_
HNRNPK	Ubiquitylation	K179	-0.020	-0.161	_ENTQTTIK(gl)LFQECCPHSTDR_
HNRNPK	Ubiquitylation	K198	-0.013	0.077	_VVLIGGK(gl)PDR_
HNRNPK	Phosphorylation	S216	0.474	0.302	_IILDLISES(ph)PIK_
HNRNPK	Ubiquitylation	K219	-0.125	0.098	_IILDLISESPIK(gl)GR_
HNRNPK	Phosphorylation	S284	0.141	-0.133	_RDYDDMS(ph)PR_
HNRNPK	Phosphorylation	S379	-0.481	0.342	_GS(ph)YGDLGGPIITTQVTIPK_
HNRNPK	Ubiquitylation	K405	0.830	0.378	_DLAGSIIGK(gl)GGQR_
HNRNPL	Ubiquitylation	K59	0.308		_YYGGGSEGGRAPK(gl)R_
HNRNPL	Ubiquitylation	K269	0.860	0.261	_IEYAK(gl)PTR_
HNRNPL	Ubiquitylation	K302	-0.616		_NDQDTWDYTNPNLSGQGDPGSNPNK(gl)R_
HNRNPL	Ubiquitylation	K455	-0.114		_LNVCVSK(gl)QPAIMPGQSYGLEDGSCSYK_
HNRNPL	Ubiquitylation	K493	1.062	0.580	_FSTPEQAAK(gl)NR_
HNRNPL	Ubiquitylation	K533	1.067		_RPSSVK(gl)VFSGK_
HNRNPL	Ubiquitylation	K538	-0.280	0.255	_VFSGK(gl)SER_
HNRNPU	Phosphorylation	S3	0.613	0.694	_(ac)SS(ph)SPVNVKK_
HNRNPU	Phosphorylation	S4	0.604	0.436	_SSS(ph)PVNVK_
HNRNPU	Ubiquitylation	K10	-0.601	0.483	_(ac)SSSPVNVKK(gl)_
HNRNPU	Ubiquitylation	K17	0.825		_VSELK(gl)EELKK_
HNRNPU	Ubiquitylation	K21	0.440		_VSELKEELK(gl)K_
HNRNPU	Ubiquitylation	K22	0.251		_VSELKEELKK(gl)_
HNRNPU	Ubiquitylation	K28	0.318		_LSDK(gl)GLKAELMER_
HNRNPU	Ubiquitylation	K31	-0.073		_GLK(gl)AELMER_
HNRNPU	Phosphorylation	S59	-0.339	0.750	_LQAALDDEEAGGRPAMEPGNGS(ph)LDLGGDSAGR_
HNRNPU	Ubiquitylation	K186	-0.973	-0.548	_EAAGK(gl)SSGPTSLFAVTVAPPGAR_
HNRNPU	Ubiquitylation	K265	1.012	1.954	_GYFEYIEENK(gl)YSR_
HNRNPU	Phosphorylation	S271	-0.442	-0.479	_AKS(ph)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK_
HNRNPU	Phosphorylation	T286		-0.661	_AKSPQPPVEEEDEHFDDT(ph)VVCLDTYNCDLHFK_
HNRNPU	Ubiquitylation	K331		1.838	_ASYGVSK(gl)GK_
HNRNPU	Ubiquitylation	K333	0.588	1.107	_GK(gl)VCFEMK_
HNRNPU	Ubiquitylation	K464	-2.351		_EK(gl)PYFPIPEEYTFIQNVPLEDR_
HNRNPU	Ubiquitylation	K516	0.760	0.963	_TTWVTK(gl)HAAENPGK_
HNRNPU	Ubiquitylation	K524	1.526	1.808	_HAAENPGK(gl)YNILGTNTIMDK_
HNRNPU	Ubiquitylation	K543	0.423		_MMVAGFK(gl)K_
HNRNPU	Ubiquitylation	K544	0.990	0.998	_K(gl)QMADTGKLNTLLQR_
HNRNPU	Ubiquitylation	K551	0.793		_QMADTGK(gl)LNTLLQR_
HNRNPU	Ubiquitylation	K565	-0.860	0.512	_APQCLGK(gl)FIEIAAR_
HNRNPU	Ubiquitylation	K602	0.540		_K(gl)AVVVCPK_
HNRNPU	Ubiquitylation	K609	0.190		_AVVVCPK(gl)DEDYKQR_
HNRNPU	Ubiquitylation	K635	-0.542	0.731	_DLPEHAVLK(gl)MK_
HNRNPU	Ubiquitylation	K670	0.028	0.169	_LLEQYK(gl)EESK_
HNRNPU	Ubiquitylation	K674	0.609	1.144	_LLEQYKEESK(gl)K_
HNRNPU	Ubiquitylation	K675	1.046		_LLEQYKEESKK(gl)_
ILF3	Phosphorylation	S62	-0.267	-0.683	_GSSEQAES(ph)DNMDVPPEDDSK_
ILF3	Ubiquitylation	K100	0.868	0.952	_VGLVAK(gl)GLLLK_
ILF3	Ubiquitylation	K119	0.194		_EK(gl)PTTALLDK_
ILF3	Ubiquitylation	K202	0.668	0.564	_QK(gl)CLAALASLR_
ILF3	Phosphorylation	S382	0.107	0.115	_RPM(ox)EEDGEEKS(ph)PSK_
ILF3	Phosphorylation	S384	0.054		_RPM(ox)EEDGEEKS(ph)PSK_
ILF3	Ubiquitylation	K454	1.019		_TAK(gl)LHVAVK_
ILF3	Phosphorylation	S482	-1.214	-1.233	_GEDS(ph)AEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAENVK_
ILF3	Phosphorylation	S482	-1.655	-1.471	_GEDS(ph)AEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTK_
ILF3	Phosphorylation	T486	-1.747	-6.485	_DSSKGEDSAEET(ph)EAKPAVVAPAPVVEAVSTPSAAFPSDATAENVK_
ILF3	Phosphorylation	T486	-1.655	-1.310	_GEDS(ph)AEETEAKPAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTK_
ILF3	Phosphorylation	T592	-0.375	-0.375	_LFPDT(ph)PLALDANK_
ILF3	Ubiquitylation	K604	-0.285		_LFPDTPLALDANK(gl)K_
ILF3	Ubiquitylation	K605	-0.285		_LFPDTPLALDANK(gl)K_
ILF3	Phosphorylation	S812	0.288	0.380	_FNYSGS(ph)GGR_
IQGAP1	Ubiquitylation	K953	0.650		_NKEQLSDMMMINK(gl)QK_
IQGAP1	Ubiquitylation	K959	0.713	0.074	_GGLK(gl)ALSK_
IQGAP1	Ubiquitylation	K1389	0.638	1.119	_TILLNTK(gl)R_
IQGAP1	Ubiquitylation	K1442	0.488		_SK(gl)SVKEDSNLTLQEK_
IQGAP1	Phosphorylation	S1443	0.392	0.273	_SKS(ph)VKEDSNLTLQEK_
IQGAP1	Ubiquitylation	K1445	0.863		_SVK(gl)EDSNLTLQEK_
LEMD3	Phosphorylation	S144	0.229		_VLLGFSSDES(ph)DVEASPR_
LEMD3	Phosphorylation	S261	0.546	0.491	_ENYSDS(ph)EEEDDDDVASSR_
LEMD3	Phosphorylation	S402		-0.056	_TNNHIGGGAFSVDS(ph)PR_
LEMD3	Phosphorylation	S777		0.664	_RNS(ph)PPNSLTPCLK_
LEMD3	Ubiquitylation	K787	0.700	0.308	_NSPPNSLTPCLK(gl)IR_
LMNB1	Phosphorylation	T19		-0.817	_AGGPT(ph)TPLS(ph)PTR_
LMNB1	Phosphorylation	T20	1.745	1.653	_AGGPTT(ph)PLS(ph)PTR_
LMNB1	Phosphorylation	S23	-1.433	-0.069	_AGGPTT(ph)PLS(ph)PTR_
LMNB1	Ubiquitylation	K49	0.241		_LAVYIDK(gl)VR_
LMNB1	Ubiquitylation	K102	0.735		_AK(gl)LQIELGK_
LMNB1	Ubiquitylation	K109	1.002	1.397	_LQIELGK(gl)CK_
LMNB1	Ubiquitylation	K111	0.960	1.074	_CK(gl)AEHDQLLLNYAK_
LMNB1	Ubiquitylation	K124	0.616		_AEHDQLLLNYAKK(gl)_
LMNB1	Ubiquitylation	K134	1.055	0.938	_ESDLNGAQIK(gl)LR_
LMNB1	Ubiquitylation	K156	-0.626		_DAALATALGDK(gl)K_
LMNB1	Ubiquitylation	K157	-0.626		_DAALATALGDK(gl)K_
LMNB1	Ubiquitylation	K182	0.626	1.150	_K(gl)QLADETLLK_
LMNB1	Ubiquitylation	K209	0.638		_K(gl)SMYEEEINETRR_
LMNB1	Ubiquitylation	K271	-0.140		_EELEQTYHAK(gl)LENAR_
LMNB1	Ubiquitylation	K312	0.657	0.597	_MRIESLSSQLSNLQK(gl)ESR_
LMNB1	Ubiquitylation	K330	0.235		_IQELEDLLAK(gl)EKDNSR_
LMNB1	Ubiquitylation	K332		0.657	_IQELEDLLAKEK(gl)_
LMNB1	Ubiquitylation	K342	1.384		_MLTDK(gl)ER_
LMNB1	Ubiquitylation	K379	0.041	0.701	_K(gl)LLEGEEERLK_
LMNB1	Ubiquitylation	K389	-0.865	-0.244	_LK(gl)LSPSPSSR_
LMNB1	Phosphorylation	S391	0.072	0.440	_LKLS(ph)PS(ph)PSSR_
LMNB1	Phosphorylation	S393	-0.194	0.189	_LKLS(ph)PS(ph)PSSR_
LMNB1	Ubiquitylation	K474	1.250		_K(gl)IGDTSVSYK_
LMNB1	Ubiquitylation	K483	0.916	0.625	_IGDTSVSYK(gl)YTSR_
LMNB1	Ubiquitylation	K532	0.805	1.201	_VILK(gl)NSQGEEVAQR_
LMNB1	Phosphorylation	T548	-1.092	-0.823	_T(ph)TIPEEEEEEEEAAGVVVEEELFHQQGTPR_
LMNB1	Phosphorylation	T549	-1.092	-0.823	_T(ph)TIPEEEEEEEEAAGVVVEEELFHQQGTPR_
LMNB1	Phosphorylation	T575	-0.569	-0.468	_TTIPEEEEEEEEAAGVVVEEELFHQQGT(ph)PR_
PDCD4	Phosphorylation	S76	1.091	0.816	_GDS(ph)VSDSGSDALR_
PDCD4	Phosphorylation	T93	-0.214	0.036	_SGLTVPT(ph)SPK_
PDCD4	Phosphorylation	S94	-0.407	-0.022	_SGLTVPTS(ph)PK_
PDCD4	Ubiquitylation	K242		1.242	_SFDK(gl)LLK_
PDCD4	Ubiquitylation	K245	-0.529		_LLK(gl)DLPELALDTPR_
PDCD4	Ubiquitylation	K309	1.505		_ATVLLSMSKGGK(gl)_
PDCD4	Phosphorylation	S457	0.751	0.699	_RFVS(ph)EGDGGR_
RBL2	Phosphorylation	S639		0.520	_ADEICIAGS(ph)PLTPR_
RBL2	Phosphorylation	S662	0.551	0.137	_SITS(ph)PTTLYDR_
RBL2	Phosphorylation	S981		-1.828	_SSSTLPVPQPS(ph)SAPPT(ph)PTR_
RBL2	Phosphorylation	S982		-2.152	_SSSTLPVPQPSS(ph)APPT(ph)PTR_
RBL2	Phosphorylation	T986	-1.219	-1.828	_SSSTLPVPQPSS(ph)APPT(ph)PTR_
RBL2	Phosphorylation	S1078	0.241	0.286	_IFYYFS(ph)NSPSK_
RBL2	Phosphorylation	S1080	-0.327	-0.297	_IFYYFSNS(ph)PSK_
RBL2	Phosphorylation	S1112	-0.598	-0.843	_RGILLEDGSES(ph)PAKR_
SNRPD1	Ubiquitylation	K44	0.032		_AVK(gl)MTLK_
YWHAE	Ubiquitylation	K38	0.710	1.822	_YDEMVESMK(gl)K_
YWHAE	Ubiquitylation	K39		1.734	_YDEMVESMKK(gl)_
YWHAE	Ubiquitylation	K60	0.554	1.732	_NLLSVAYK(gl)NVIGAR_
YWHAE	Ubiquitylation	K83	0.375	0.643	_IISSIEQKEENK(gl)GGEDKLK_
YWHAE	Ubiquitylation	K90	1.103		_GGEDKLK(gl)MIR_
YWHAE	Ubiquitylation	K116	-0.289		_LICCDILDVLDK(gl)HLIPAANTGESK_
YWHAE	Ubiquitylation	K133	0.653	1.264	_VFYYK(gl)M(ox)K_
YWHAE	Ubiquitylation	K152	0.031	0.601	_K(gl)EAAENSLVAYK_
YWHAE	Phosphorylation	S210	0.534	0.506	_AAFDDAIAELDTLS(ph)EESYK_
YWHAE	Phosphorylation	S213		0.541	_AAFDDAIAELDTLSEES(ph)YK_
YWHAQ	Ubiquitylation	K3		0.827	_(ac)MEK(gl)TELIQK_
YWHAQ	Ubiquitylation	K9	0.588	0.253	_(ac)MEKTELIQK(gl)AK_
YWHAQ	Ubiquitylation	K11	0.561	0.388	_AK(gl)LAEQAER_
YWHAQ	Ubiquitylation	K27	-0.849		_YDDMATCMK(gl)AVTEQGAELSNEER_
YWHAQ	Ubiquitylation	K49	0.260	0.469	_NLLSVAYK(gl)NVVGGR_
YWHAQ	Ubiquitylation	K68	0.288		_VISSIEQK(gl)TDTSDKK_
YWHAQ	Ubiquitylation	K74	0.305		_TDTSDK(gl)KLQLIK_
YWHAQ	Ubiquitylation	K75	0.253		_TDTSDKK(gl)LQLIK_
YWHAQ	Ubiquitylation	K80	0.655	1.500	_LQLIK(gl)DYR_
YWHAQ	Ubiquitylation	K85	0.110		_EK(gl)VESELR_
YWHAQ	Ubiquitylation	K120	0.512	0.946	_VFYLK(gl)MK_
YWHAQ	Ubiquitylation	K122	0.426	0.859	_MK(gl)GDYFR_
YWHAQ	Ubiquitylation	K158	-0.439	-0.371	_K(gl)EMQPTHPIR_