RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
W

Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
TCEB3	3	0.830	-0.970	0.889	1.395	2.691		-0.314
POLR2E	3			-1.668	0.597	1.782	-1.557	1.254
GTF2H1	3	-0.470	0.340	0.260	2.656	2.859	1.092	0.966
POLR2A	3			-0.397	0.863	1.593	-2.121	0.465
POLR2J	2	-0.950	0.830		0.627	1.720
POLR2J	2	-0.730	0.610		0.627	1.720
POLR2J	2	-0.950	0.830	-0.638
POLR2J	2	-0.730	0.610	-0.638
POLR2J3	2	-1.290	1.980		0.627	1.720
POLR2J3	2	-0.380	0.450		0.627	1.720
POLR2B	2	-0.420	0.060
POLR2B	2	-0.420	0.060	-0.204	1.234	2.104	-1.532	0.478
ERCC2	2	-0.590	1.060	-0.491		1.066
CDK9	2	-1.000	1.130	2.047	1.362	1.840	1.146	0.280
GTF2H2	2	0.890	-0.020	0.105	2.323	2.292	1.092	0.150
GTF2H2C	2			0.105	2.323	2.292	1.092	0.150
ERCC3	2	-1.110	1.490		2.619	2.418		0.499
POLR2L	2	-1.510	2.550	-0.148	0.893	1.580
SUPT5H	2	-0.200	-0.640	1.025	-0.578	1.307	-1.339	0.255
POLR2J2	1				0.627	1.720
CCNT2	1	-1.850	3.910
POLR2C	1	0.720	-0.840				-1.225	-0.292
POLR2C	1	0.720	-0.840	-0.875	0.495	1.776
TCEB2	1	-1.490	2.890	-0.134	-0.585	0.682	0.156	0.662
POLR2D	1			-1.222	0.655	1.981
POLR2H	1			-0.862	1.290	2.109	0.203	0.602
POLR2G	1	-0.180	-0.160	-1.233	1.015	2.091	-1.535	0.430
TCEA1	1	-0.560	0.790	-0.119	0.977	2.240	-0.032	0.136
SUPT4H1	1	2.420	-1.150	0.026	-0.438	1.185		0.435
GTF2H4	1	-1.010	2.070		1.371	2.504
MNAT1	0	-0.030	-0.100			0.666
SUPT16H	0	0.440	-0.660	1.250	0.965	1.480	0.663	0.440
POLR2F	0			-2.123
POLR2I	0			-2.045
ELL	0	0.700	0.150	-0.733
GTF2H3	0	-0.020	0.680				1.408	0.908
NCBP2	0	-0.700	0.840	0.520	0.032	1.096	-0.957
GTF2F1	0	-0.280	0.230	-3.106			1.494	-0.308
CCNT1	0	0.720	-0.430				1.355	1.434
CCNH	0	1.480	-0.550
NCBP1	0	-0.510	0.770	1.020	-0.130	0.769	-0.383	0.710
POLR2K	0	0.330	-0.790	-0.751
SSRP1	0	0.790	-0.850	0.010	1.037	1.489	0.767	0.505
TCEB1	0	0.480	-0.460	0.004			-1.523	0.284
GTF2F2	0	-0.390	0.630	-3.244			-0.223

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
CCNH	Ubiquitylation	K189	0.418		_K(gl)TADDFLNR_
CCNT2	Phosphorylation	S480	-0.420		_QGQSQAASSSSVTS(ph)PIK_
CCNT2	Phosphorylation	S601	-0.068	0.175	_S(ph)PVGLSSDGISSSSSSSR_
CDK9	Ubiquitylation	K35		-0.042	_IGQGTFGEVFK(gl)AR_
CDK9	Ubiquitylation	K151		-0.345	_DMK(gl)AANVLITR_
CDK9	Ubiquitylation	K178	-0.409	-1.058	_AFSLAK(gl)NSQPNR_
CDK9	Ubiquitylation	K269		-1.874	_LELVK(gl)GQK_
ELL	Phosphorylation	S308	-0.101	-0.337	_LCQPQSTGSLLGDPAAS(ph)SPPGER_
ELL	Phosphorylation	S309	-0.151	-0.339	_LCQPQSTGSLLGDPAASS(ph)PPGER_
ELL	Phosphorylation	S437	-0.591	-0.813	_LGLPLLTDCAQPS(ph)RPHGSPSR_
ELL	Phosphorylation	S442	-0.565	-0.678	_LGLPLLTDCAQPSRPHGS(ph)PSR_
ERCC2	Ubiquitylation	K268	5.973	1.957	_CQGNLETLQK(gl)TVLR_
ERCC2	Ubiquitylation	K507		-2.034	_GNDQVAISSK(gl)FETR_
GTF2F1	Phosphorylation	S385	0.043	0.017	_GNS(ph)RPGT(ph)PSAEGGSTSSTLR_
GTF2F1	Phosphorylation	T389	0.484	-0.150	_GNS(ph)RPGT(ph)PSAEGGSTSSTLR_
GTF2F1	Phosphorylation	S391	-0.032	-0.039	_GNS(ph)RPGTPS(ph)AEGGSTSSTLR_
GTF2F1	Phosphorylation	S433	-0.395	-0.554	_LDTGPQSLS(ph)GK_
GTF2F1	Phosphorylation	T445	0.385	0.574	_T(ph)TPNSGDVQVTEDAVR_
GTF2F1	Phosphorylation	T446	0.385	0.574	_T(ph)TPNSGDVQVTEDAVR_
GTF2F2	Ubiquitylation	K33	-0.261	-0.017	_YLSQQWAK(gl)ASGR_
GTF2F2	Ubiquitylation	K137	-1.076	0.094	_LQIEESSK(gl)PVR_
GTF2H1	Ubiquitylation	K240	2.338		_LNTGSK(gl)DLFAECAK_
GTF2H2	Ubiquitylation	K42	-0.223		_ATIEDILFKAK(gl)_
GTF2H2	Ubiquitylation	K77		-1.015	_TMEDQDLK(gl)PNR_
GTF2H2	Ubiquitylation	K116		-1.309	_RAEK(gl)LTELSGNPR_
GTF2H2C	Ubiquitylation	K42	-0.223		_ATIEDILFKAK(gl)_
GTF2H2C	Ubiquitylation	K77		-1.015	_TMEDQDLK(gl)PNR_
GTF2H2C	Ubiquitylation	K116		-1.309	_RAEK(gl)LTELSGNPR_
GTF2H3	Ubiquitylation	K28		-0.741	_QALK(gl)ESQFTLSK_
GTF2H3	Ubiquitylation	K74		-0.538	_FLYPGK(gl)NGR_
GTF2H3	Ubiquitylation	K125	-0.584	-0.425	_SDIK(gl)GQHTETLLAGSLAK_
GTF2H3	Ubiquitylation	K152	-0.594		_MNKEVK(gl)DNQEMK_
GTF2H3	Ubiquitylation	K300		-1.837	_ISLPPVLKAK(gl)_
GTF2H4	Ubiquitylation	K452		-2.338	_LMVVTPAGHSDVK(gl)R_
MNAT1	Phosphorylation	S279	0.003	0.225	_AAS(ph)PQDLAGGYTSSLACHR_
NCBP1	Phosphorylation	T21	0.500	1.259	_KT(ph)SDANETEDHLESLICK_
NCBP1	Phosphorylation	S22	1.091	1.381	_KTS(ph)DANETEDHLESLICK_
NCBP1	Ubiquitylation	K204	0.269		_IFANTESYLK(gl)R_
NCBP2	Ubiquitylation	K7		-1.025	_(ac)SGGLLK(gl)ALR_
POLR2A	Ubiquitylation	K32		1.006	_VQFGVLSPDELK(gl)R_
POLR2A	Ubiquitylation	K127		1.428	_IK(gl)DILAK_
POLR2A	Ubiquitylation	K132		0.487	_IKDILAK(gl)SK_
POLR2A	Ubiquitylation	K149		1.053	_LTHVYDLCK(gl)GK_
POLR2A	Ubiquitylation	K226		1.254	_VHEIFK(gl)R_
POLR2A	Ubiquitylation	K279		0.885	_NQDDLTHK(gl)LADIVK_
POLR2A	Ubiquitylation	K285		1.235	_LADIVK(gl)INNQLR_
POLR2A	Ubiquitylation	K417		0.662	_GNSQYPGAK(gl)YIIR_
POLR2A	Ubiquitylation	K707		1.333	_TYQDIQNTIK(gl)K_
POLR2A	Ubiquitylation	K710	1.362	1.417	_AK(gl)QDVIEVIEK_
POLR2A	Ubiquitylation	K751	-0.268	1.477	_DK(gl)TGSSAQK(gl)SLSEYNNFK_
POLR2A	Ubiquitylation	K758	-0.129	1.511	_DKTGSSAQK(gl)SLSEYNNFK_
POLR2A	Ubiquitylation	K767		1.702	_SLSEYNNFK(gl)SMVVSGAK_
POLR2A	Ubiquitylation	K775		1.252	_SMVVSGAK(gl)GSK_
POLR2A	Ubiquitylation	K812		-0.169	_TLPHFIK(gl)DDYGPESR_
POLR2A	Ubiquitylation	K976	0.145	0.332	_VIFPTGDSK(gl)VVLPCNLLR_
POLR2A	Ubiquitylation	K1014		0.766	_VVEGVK(gl)ELSK_
POLR2A	Ubiquitylation	K1125	4.356	1.173	_LK(gl)ELINISK_
POLR2A	Ubiquitylation	K1155	3.909	0.506	_AK(gl)DILCR_
POLR2A	Ubiquitylation	K1350	5.000	0.930	_VLSEK(gl)DVDPVR_
POLR2A	Phosphorylation	T1840		-1.940	_YT(ph)PTSPSYSPSSPEYTPTSPK_
POLR2A	Phosphorylation	T1842	-2.070		_YTPT(ph)SPSYS(ph)PSSPEYTPTSPK_
POLR2A	Phosphorylation	S1843	-1.841	-1.437	_YTPTS(ph)PSYSPSSPEYTPTSPK_
POLR2A	Phosphorylation	Y1846		-1.758	_YTPTSPSY(ph)SPSSPEYTPTS(ph)PK_
POLR2A	Phosphorylation	S1847	-1.016	-1.726	_Y(ph)TPTSPSYS(ph)PSSPEYTPT(ph)SPK_
POLR2A	Phosphorylation	S1849		-2.693	_YTPTSPSY(ph)SPS(ph)SPEYTPTSPK_
POLR2A	Phosphorylation	S1850	-1.360	-0.983	_YTPTSPSYSPSS(ph)PEYTPTS(ph)PK_
POLR2A	Phosphorylation	Y1853	-1.665		_YTPTSPSYSPSSPEY(ph)TPT(ph)SPK_
POLR2A	Phosphorylation	T1856		-1.740	_YTPTSPSYS(ph)PSSPEYTPT(ph)SPK_
POLR2A	Phosphorylation	S1857	-2.153	-2.282	_YTPTSPSYSPSSPEYTPTS(ph)PK_
POLR2A	Phosphorylation	T1877	-0.410		_YSPT(ph)SPTYS(ph)PTTPK_
POLR2A	Phosphorylation	S1878	-1.417	-0.623	_YSPTS(ph)PTYSPTT(ph)PK_
POLR2A	Phosphorylation	S1882	-0.491	0.086	_YSPTS(ph)PTYS(ph)PTTPK_
POLR2A	Phosphorylation	T1885	-0.372	-0.103	_YSPTS(ph)PTYSPTT(ph)PK_
POLR2A	Phosphorylation	S1889		-1.476	_YS(ph)PTSPTYSPTS(ph)PVYTPTSPK_
POLR2A	Phosphorylation	T1891	-3.041	-2.243	_YSPT(ph)SPTYSPTSPVYTPTSPK_
POLR2A	Phosphorylation	S1892	-2.675	-2.044	_YSPTS(ph)PTYSPTSPVYTPTSPK_
POLR2A	Phosphorylation	S1896		-1.174	_YSPTSPTYS(ph)PTSPVYTPT(ph)SPK_
POLR2A	Phosphorylation	T1898		-1.558	_YSPTS(ph)PTYSPT(ph)SPVYTPTSPK_
POLR2A	Phosphorylation	S1899	-0.903	-1.110	_YSPTSPTYSPTS(ph)PVYT(ph)PTSPK_
POLR2A	Phosphorylation	T1903	-0.180	-1.726	_YSPTSPTYSPTS(ph)PVYT(ph)PTSPK_
POLR2A	Phosphorylation	T1905	-1.328	-1.788	_YSPTSPTYSPTS(ph)PVYTPT(ph)SPK_
POLR2A	Phosphorylation	S1906	-2.720	-2.245	_YSPTS(ph)PTYSPTSPVYTPTS(ph)PK_
POLR2A	Phosphorylation	S1910	-1.108	-1.445	_YS(ph)PTSPTYS(ph)PTSPK_
POLR2A	Phosphorylation	T1912		-1.639	_YSPT(ph)SPTYS(ph)PTSPK_
POLR2A	Phosphorylation	S1913	-2.778	-1.508	_YSPTS(ph)PTYSPTS(ph)PK_
POLR2A	Phosphorylation	T1915	-2.612		_YSPTSPT(ph)YSPTSPK_
POLR2A	Phosphorylation	S1917	-2.286	-1.773	_YSPTS(ph)PTYS(ph)PTSPK_
POLR2A	Phosphorylation	T1919	-2.218	-1.471	_YSPTS(ph)PTYSPT(ph)SPK_
POLR2A	Phosphorylation	S1920	-1.088	-1.414	_YSPTS(ph)PTYSPTS(ph)PK_
POLR2B	Ubiquitylation	K43		0.529	_TVIK(gl)EGEEQLQTQHQK_
POLR2B	Ubiquitylation	K55	1.247	0.522	_EGEEQLQTQHQK(gl)TFIGK_
POLR2B	Ubiquitylation	K60		-0.347	_TFIGK(gl)IPIMLR_
POLR2B	Ubiquitylation	K120		0.324	_K(gl)DSKYAYTGECR_
POLR2B	Ubiquitylation	K123		0.490	_DSK(gl)YAYTGECR_
POLR2B	Ubiquitylation	K157	1.882		_GGQGAK(gl)K(gl)SAIGQR_
POLR2B	Ubiquitylation	K158	1.882		_GGQGAK(gl)K(gl)SAIGQR_
POLR2B	Ubiquitylation	K249	0.973		_YAK(gl)EVLQK_
POLR2B	Ubiquitylation	K270		-0.350	_EMLPHVGVSDFCETKK(gl)_
POLR2B	Ubiquitylation	K366	2.033	0.015	_YSLATGNWGDQK(gl)K_
POLR2B	Ubiquitylation	K367	2.667	0.205	_YSLATGNWGDQKK(gl)_
POLR2B	Ubiquitylation	K539	-0.182	-0.025	_ICRPLLIVEK(gl)QK_
POLR2B	Ubiquitylation	K541	-0.374	-0.025	_ICRPLLIVEK(gl)QK_
POLR2B	Ubiquitylation	K665	-0.055		_MDTLAHVLYYPQK(gl)PLVTTR_
POLR2B	Ubiquitylation	K740		-0.513	_GFDQEEVFEK(gl)PTR_
POLR2B	Ubiquitylation	K843	0.603	-0.748	_IPQIGDK(gl)FASR_
POLR2B	Ubiquitylation	K851	0.621		_HGQK(gl)GTCGIQYR_
POLR2B	Ubiquitylation	K902	0.615	-0.938	_VSANK(gl)GEIGDATPFNDAVNVQK_
POLR2B	Ubiquitylation	K1052		-0.541	_NK(gl)TQISLVR_
POLR2E	Ubiquitylation	K85	2.361	2.270	_VGIK(gl)TIK_
POLR2E	Ubiquitylation	K88	-0.032	0.560	_TIK(gl)VYCQR_
POLR2E	Ubiquitylation	K192	0.061	-0.593	_GQVVK(gl)IIRPSETAGR_
POLR2F	Ubiquitylation	K59	0.390	0.897	_ITTPYM(ox)TK(gl)YER_
POLR2F	Ubiquitylation	K101	0.662		_K(gl)IPIIIR_
POLR2G	Ubiquitylation	K27		-0.304	_YFGPNLLNTVK(gl)QK_
POLR2G	Ubiquitylation	K29		0.016	_QK(gl)LFTEVEGTCTGK_
POLR2G	Ubiquitylation	K71		0.320	_GFVLYPVK(gl)YK_
POLR2G	Ubiquitylation	K73		0.320	_GFVLYPVK(gl)YK_
POLR2G	Ubiquitylation	K146		0.215	_LK(gl)IVGTR_
POLR2H	Ubiquitylation	K146		0.110	_VYLLMK(gl)K_
POLR2H	Ubiquitylation	K147	0.013	-0.168	_VYLLMKK(gl)_
POLR2J	Ubiquitylation	K23	0.286	0.095	_ITINK(gl)DTK_
POLR2J	Ubiquitylation	K120	2.108		_VAIK(gl)DKQEGIE_
POLR2J	Ubiquitylation	K122	1.878		_VAIK(gl)DKQEGIE_
POLR2L	Ubiquitylation	K67	0.770	0.200	_LLNYAPLEK(gl)_
SSRP1	Ubiquitylation	K33	0.341		_QGIIFK(gl)NSK_
SSRP1	Ubiquitylation	K36		0.839	_QGIIFKNSK(gl)_
SSRP1	Ubiquitylation	K67	0.956		_LLTK(gl)NGHVYK_
SSRP1	Ubiquitylation	K105	0.302	-0.067	_DLCVK(gl)GWNWGTVK_
SSRP1	Phosphorylation	S437	0.313	1.110	_EGM(ox)NPS(ph)YDEYADSDEDQHDAYLER_
SSRP1	Phosphorylation	Y441		0.366	_EGMNPSYDEY(ph)ADSDEDQHDAYLER_
SSRP1	Phosphorylation	S444	0.152	0.278	_EGMNPSYDEYADS(ph)DEDQHDAYLER_
SSRP1	Ubiquitylation	K661	0.769		_QLSESFK(gl)SK_
SUPT16H	Ubiquitylation	K335	0.728		_ICDVYNAVMDVVKK(gl)_
SUPT16H	Ubiquitylation	K366	0.618	0.185	_EGSLVINSK(gl)NQYK_
SUPT16H	Ubiquitylation	K370	0.755	0.185	_EGSLVINSK(gl)NQYK_
SUPT16H	Ubiquitylation	K490	-0.413	-0.183	_ELAAQLNEEAK(gl)R_
SUPT16H	Ubiquitylation	K497	-0.023	0.099	_RLTEQK(gl)GEQQIQK_
SUPT16H	Ubiquitylation	K504	-0.091	0.104	_LTEQKGEQQIQK(gl)AR_
SUPT16H	Ubiquitylation	K513	-1.189		_KSNVSYK(gl)NPSLMPK_
SUPT16H	Ubiquitylation	K606	-1.524		_ASNIK(gl)APGEQTVPALNLQNAFR_
SUPT16H	Ubiquitylation	K674	-0.935	-1.355	_DLYIRPNIAQK(gl)R_
SUPT16H	Ubiquitylation	K781	-0.148		_TAFK(gl)NFIEK_
SUPT4H1	Ubiquitylation	K8	-1.392		_(ac)ALETVPK(gl)DLR_
SUPT5H	Phosphorylation	S32	-1.198		_S(ph)AAGSEKEEEPEDEEEEEEEEEYDEEEEEEDDDRPPK_
SUPT5H	Ubiquitylation	K143	0.325		_DQREEELGEYYMK(gl)K_
SUPT5H	Ubiquitylation	K144	0.325		_DQREEELGEYYMK(gl)K_
SUPT5H	Ubiquitylation	K231	1.246		_GYIYVEAYK(gl)QTHVK_
SUPT5H	Ubiquitylation	K274	0.337	1.786	_EVANLK(gl)PK_
SUPT5H	Ubiquitylation	K323	1.006		_MSLK(gl)DWFAK_
SUPT5H	Ubiquitylation	K627	0.092		_SFAFLHCK(gl)K_
SUPT5H	Ubiquitylation	K628	0.092		_SFAFLHCK(gl)K_
SUPT5H	Ubiquitylation	K650	-0.223		_HLVLAGGSK(gl)PR_
SUPT5H	Phosphorylation	S666	-0.471	-0.100	_DVTNFTVGGFAPMS(ph)PR_
SUPT5H	Phosphorylation	S671	-0.479	0.444	_ISS(ph)PMHPSAGGQR_
SUPT5H	Ubiquitylation	K718	0.094		_ISQGPYK(gl)GYIGVVK_
SUPT5H	Phosphorylation	T806		0.883	_TPHYGSQT(ph)PLHDGSR_
SUPT5H	Ubiquitylation	K1017	-0.116		_SVTGGMCSVYLK(gl)DSEK_
SUPT5H	Phosphorylation	T1036	5.538		_VVSISSEHLEPITPT(ph)K_
SUPT5H	Ubiquitylation	K1037	-1.487		_VVSISSEHLEPITPTK(gl)NNK_
TCEA1	Phosphorylation	T96	0.333	0.133	_KKEPAIT(ph)SQNSPEAR_
TCEA1	Phosphorylation	S97	0.484	0.281	_EPAITS(ph)QNSPEAR_
TCEA1	Phosphorylation	S100	0.006	0.054	_KKEPAITSQNS(ph)PEAR_
TCEA1	Ubiquitylation	K242	0.908		_NLTK(gl)EAIR_
TCEA1	Ubiquitylation	K265	0.854		_TGGTQTDLFTCGK(gl)CK_
TCEB1	Ubiquitylation	K32	0.313	0.583	_LISSDGHEFIVK(gl)R_
TCEB1	Ubiquitylation	K72	-0.158		_EIPSHVLSK(gl)_
TCEB2	Ubiquitylation	K28		-0.246	_ESSTVFELK(gl)R_
TCEB2	Ubiquitylation	K36		-1.370	_IVEGILK(gl)RPPDEQR_
TCEB3	Phosphorylation	S541	2.408		_AFS(ph)SPQEEEEAGFTGR_
TCEB3	Phosphorylation	S542	2.813	2.282	_AFSS(ph)PQEEEEAGFTGR_