RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
IFT80	1	-1.610	2.740
BBS2	1	-0.810	0.820
CEP290	1	1.020	-0.690
CEP290	1	2.010	-1.090
MKS1	0
OFD1	0	1.920	-1.210				-0.269
PTPN23	0	0.800	-0.570
KIAA0586	0	-1.200	1.970
ACTR3	0	1.800	-1.060	0.313	-0.076	0.489	-0.053	-0.011
TROVE2	0	1.130	-0.720	0.477			0.004	-0.157
IFT43	0	-0.070	1.100
SEPT7	0
ARL3	0	0.820	-0.590
BBS7	0
BBS4	0	0.310	0.160
GSN	0	0.350	-0.590
WDR19	0	-0.150	-0.220
IFT122	0	0.590	-0.240
IFT122	0	1.590	-0.690
TMEM67	0	-0.480	0.280
TCTN2	0	0.150	-0.580
DYNC2H1	0	-1.530	1.820				-0.319	0.050
DYNC2H1	0	-1.530	1.820	0.313
PARVA	0	-0.710	1.020
TCTN1	0	1.100	-1.080

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ACTR3	Ubiquitylation	K225	-1.054	-1.094	_DREVGIPPEQSLETAK(gl)AVK_
ACTR3	Ubiquitylation	K251	-1.416		_EFNKYDTDGSK(gl)WIK_
ACTR3	Ubiquitylation	K264	-0.776		_QYTGINAISK(gl)K_
ACTR3	Ubiquitylation	K265		-0.295	_QYTGINAISKK(gl)_
ACTR3	Ubiquitylation	K348	0.619	0.713	_LK(gl)LSEELSGGR_
ARL3	Ubiquitylation	K9	0.216		_K(gl)LKSAPDQEVR_
ARL3	Ubiquitylation	K11	-0.579		_LK(gl)SAPDQEVR_
BBS2	Ubiquitylation	K231		-0.482	_FGYALSNGTVGVYDK(gl)TSR_
BBS2	Ubiquitylation	K360		-1.721	_NYEENAK(gl)AELASPLNEADGHR_
BBS2	Phosphorylation	S365		2.366	_AELAS(ph)PLNEADGHR_
BBS2	Ubiquitylation	K659		-0.582	_DLLNGYK(gl)IR_
BBS4	Ubiquitylation	K28		-0.615	_TQFPVSTESQK(gl)PR_
BBS4	Ubiquitylation	K302		-2.331	_YVAAISCLK(gl)R_
BBS4	Ubiquitylation	K408		-2.242	_NALAQYQEMEK(gl)K_
BBS4	Ubiquitylation	K409		-2.242	_NALAQYQEMEK(gl)K_
BBS7	Ubiquitylation	K59		-1.507	_KGEAAAVFK(gl)TLPGPK_
BBS7	Ubiquitylation	K479		-0.952	_IQPK(gl)TCQVR_
BBS7	Ubiquitylation	K685		-0.505	_FK(gl)GTNVK_
CEP290	Ubiquitylation	K593	-1.125		_K(gl)LDLLSLK_
CEP290	Ubiquitylation	K735	-1.199		_KEAINYSQQLAK(gl)ANLK_
CEP290	Ubiquitylation	K830	0.626		_EYLSEK(gl)ETWK_
CEP290	Ubiquitylation	K1178	-1.408		_DK(gl)EVESLR_
CEP290	Ubiquitylation	K1336	-0.794		_GLEELISTLK(gl)DTK_
CEP290	Ubiquitylation	K1552	-0.135		_LNQK(gl)EEVLKK_
CEP290	Ubiquitylation	K1682	0.578		_LQLQENHEDEVKK(gl)_
DYNC2H1	Ubiquitylation	K158		0.457	_SDTNLTK(gl)LK_
DYNC2H1	Ubiquitylation	K398		-0.876	_IIAPAEQK(gl)IAGK_
DYNC2H1	Ubiquitylation	K1248		-0.579	_AADLK(gl)DLNSR_
DYNC2H1	Ubiquitylation	K2608		-1.364	_LNSTDLK(gl)DVIKK_
DYNC2H1	Ubiquitylation	K2613		-1.117	_LNSTDLKDVIKK(gl)_
GSN	Ubiquitylation	K360	-0.879	0.993	_AALK(gl)TASDFITK_
IFT122	Ubiquitylation	K804		-0.101	_MLITK(gl)QADWAR_
IFT122	Ubiquitylation	K1084	-0.071		_FQK(gl)SIELGTLTIR_
IFT43	Phosphorylation	S78	1.373	0.606	_KAS(ph)EEIEDFR_
IFT80	Ubiquitylation	K665		-0.641	_DLCITSVK(gl)R_
KIAA0586	Ubiquitylation	K756	-0.597		_TQTDFYATK(gl)PK_
MKS1	Ubiquitylation	K178	-0.574	0.716	_GMEGGILK(gl)SR_
MKS1	Ubiquitylation	K469		-0.213	_IPGSFK(gl)GER_
MKS1	Ubiquitylation	K507	0.137	-0.095	_AFMESSSLQK(gl)R_
OFD1	Ubiquitylation	K218		0.010	_AEMCQK(gl)LK_
OFD1	Ubiquitylation	K256		-0.642	_ACQAK(gl)SEALVLR_
OFD1	Ubiquitylation	K533		-0.930	_ASVK(gl)SLTTQVADLK_
OFD1	Phosphorylation	S669	-0.349	-0.888	_S(ph)PPSLHLLEAFK_
OFD1	Phosphorylation	S735	0.482	-0.458	_RLS(ph)STPLPK_
OFD1	Phosphorylation	S762	-0.735	-0.990	_SHIAS(ph)PSPCPDR_
OFD1	Phosphorylation	S774	-0.145	-0.111	_MPLPS(ph)PTESR_
OFD1	Phosphorylation	S788		-0.298	_HSLSIPPVS(ph)SPPEQK_
OFD1	Phosphorylation	S789		-0.909	_HSLSIPPVSS(ph)PPEQK_
OFD1	Phosphorylation	S899		-0.092	_RQS(ph)NLQEVLER_
PARVA	Phosphorylation	T3	-0.031	0.005	_(ac)AT(ph)SPQKS(ph)PSVPK_
PARVA	Phosphorylation	S4	-0.031	0.005	_(ac)ATS(ph)PQKS(ph)PSVPK_
PARVA	Phosphorylation	S8	-0.343	-0.395	_(ac)AT(ph)SPQKS(ph)PSVPK_
PARVA	Phosphorylation	S10	-1.421	-1.107	_SPS(ph)VPKSPTPK_
PARVA	Phosphorylation	S14	-0.492	-0.182	_SPSVPKS(ph)PTPK_
PARVA	Phosphorylation	T16		-0.703	_SPT(ph)PKSPPSR_
PARVA	Phosphorylation	S19	-0.513	-0.721	_SPTPKS(ph)PPSR_
PTPN23	Ubiquitylation	K215	-0.317		_ISAQVVDYYK(gl)EACR_
PTPN23	Ubiquitylation	K288	-0.754	-0.795	_LAK(gl)GQPDTVQDALR_
PTPN23	Ubiquitylation	K500	-0.529		_EWAK(gl)YMEVHEK_
PTPN23	Phosphorylation	S1123	-1.317	-0.838	_GAAAADLLSSS(ph)PESQHGGTQSPGGGQPLLQPTK_
SEPT7	Ubiquitylation	K88	0.195		_IK(gl)KTVQVEQSK_
SEPT7	Ubiquitylation	K209	0.315	0.490	_ADTLTPEECQQFKK(gl)_
SEPT7	Ubiquitylation	K213	1.008	1.111	_QIMK(gl)EIQEHK_
SEPT7	Ubiquitylation	K219	0.414	0.573	_EIQEHK(gl)IK_
SEPT7	Ubiquitylation	K333		0.134	_GQLTK(gl)SPLAQMEEERR_
SEPT7	Phosphorylation	S334	0.362	0.417	_S(ph)PLAQMEEERR_
SEPT7	Ubiquitylation	K395	0.680		_NLEAQHK(gl)ELEEK_
SEPT7	Phosphorylation	T426		0.290	_ILEQQNSSRT(ph)LEK_
TCTN1	Ubiquitylation	K459		1.010	_LTGALPCQLVAQKVK(gl)_
TCTN2	Ubiquitylation	K337		0.250	_DGIINAK(gl)IK_
TMEM67	Ubiquitylation	K650	1.063	0.642	_VLK(gl)AVEGEGGVR_
TMEM67	Ubiquitylation	K986		0.268	_NLASK(gl)TLVDQR_
TROVE2	Ubiquitylation	K140	0.863		_ESMK(gl)CGMWGR_
TROVE2	Ubiquitylation	K234		0.305	_YLEAVEK(gl)VKR_
TROVE2	Ubiquitylation	K312	0.209	0.080	_LCNEK(gl)LLK_
TROVE2	Ubiquitylation	K342	0.120		_LK(gl)WRPDEEILK_
WDR19	Ubiquitylation	K475		0.103	_LFPAVDDK(gl)CR_