RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
RPA1	6	0.500	0.350	3.133	3.046	0.303	1.770	2.112
SMC3	3	-0.960	1.470
SMC3	3	-0.960	1.470		0.213	0.283
SMC3	3	-0.960	1.470	2.266			0.833	0.442
RLF	2	0.690	-0.300				0.605	0.254
ERCC1	1	-1.720	3.820
ERCC1	1	-1.460	2.450
SMC1B	1	-0.590	0.420	2.703	0.164	0.430	-1.824	0.661
PELO	1	2.410	-0.720	-0.492	-0.182	0.320	0.293	0.579
PTTG1	1	-1.960	3.490
MRE11A	0	1.600	-0.730		0.145	0.420
MRE11A	0	1.600	-0.730	0.023			0.453	0.150
YY1	0	-0.370	0.560	0.179	0.557	0.050	-0.096	0.076
SMCHD1	0			-0.025	-0.104	-0.042	0.384	0.295
CENPT	0	-0.330	0.020
SMC4	0	0.480	-0.480	0.146	-0.138	0.461	0.023	-0.067
ITPA	0	0.970	-0.680	-0.090
CDCA8	0						-0.883	-0.739
CDCA8	0
SMC2	0	-0.770	1.000		-0.048	0.476	-0.227	-0.071
SMC2	0	-0.770	1.000
SMC2	0	-0.770	1.000	0.106
MYC	0	0.170	0.550	-2.443	-0.949	-0.454		-1.290
TP53	0	-1.070	1.050	-2.808	0.076	-0.094	0.436	0.497
BLM	0	1.270	-0.830	-0.850	-0.141	0.144	0.151	0.149
BLM	0	1.270	-0.830
PTTG2	0	0.840	-0.820

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
BLM	Phosphorylation	S144		1.234	_KLEFSSS(ph)PDSLSTINDWDDMDDFDTSETSK_
CDCA8	Ubiquitylation	K37	0.600		_IK(gl)QIESDRQNLLK_
CDCA8	Ubiquitylation	K183	-1.967		_LEVSMVK(gl)PTPGLTPR_
CDCA8	Phosphorylation	S219	0.796	0.753	_IYNISGNGS(ph)PLADSK_
CENPT	Phosphorylation	S397	-0.408	-0.375	_AAS(ph)PESASSTPESLQAR_
ERCC1	Ubiquitylation	K162	-0.634		_LQSLGK(gl)NFALR_
ERCC1	Ubiquitylation	K243		-0.245	_VTECLTTVK(gl)SVNK_
ERCC1	Ubiquitylation	K281		-1.586	_EDLALCPGLGPQK(gl)AR_
ITPA	Ubiquitylation	K18	0.644		_IVFVTGNAK(gl)K_
ITPA	Ubiquitylation	K19	0.644		_IVFVTGNAK(gl)K_
MRE11A	Ubiquitylation	K387	0.442		_FSQK(gl)FVDR_
MYC	Phosphorylation	S20	-1.444	-1.145	_PLNVS(ph)FTNR_
MYC	Phosphorylation	T72	-1.699	-1.813	_FELLPT(ph)PPLS(ph)PSRR_
MYC	Phosphorylation	S76	-1.777	-1.435	_FELLPTPPLS(ph)PSR_
MYC	Phosphorylation	S81		0.459	_S(ph)GLCSPSYVAVTPFSLR_
MYC	Phosphorylation	S85	0.199	0.073	_SGLCS(ph)PSYVAVTPFSLR_
MYC	Ubiquitylation	K162	-2.475	-1.259	_LVSEK(gl)LASYQAAR_
MYC	Phosphorylation	S295		-0.903	_SESGS(ph)PSAGGHSKPPHSPLVLK_
MYC	Phosphorylation	S307		-1.486	_SES(ph)GSPSAGGHSKPPHS(ph)PLVLK_
MYC	Ubiquitylation	K340		-2.449	_VK(gl)LDSVR_
MYC	Ubiquitylation	K403		-3.432	_DQIPELENNEK(gl)APK_
PELO	Ubiquitylation	K84		-0.130	_VK(gl)GTNIQENEYVK_
PELO	Ubiquitylation	K227	0.673		_EQFCDYMFQQAVK(gl)TDNK_
PELO	Ubiquitylation	K231	0.656		_TDNK(gl)LLLENR_
PELO	Ubiquitylation	K254		-1.255	_YSLK(gl)EALCDPTVASR_
PELO	Ubiquitylation	K270	0.419	-0.240	_LSDTK(gl)AAGEVK_
PTTG1	Ubiquitylation	K21		-1.438	_VVAK(gl)DGLK_
PTTG1	Ubiquitylation	K25	-1.469	-1.355	_DGLK(gl)LGSGPSIK_
PTTG1	Ubiquitylation	K48	-2.125	-2.226	_FGK(gl)TFDAPPALPK_
PTTG1	Phosphorylation	S165	-1.353	-0.939	_LFQLGPPS(ph)PVK_
PTTG2	Phosphorylation	S165	-1.353	-0.939	_LFQLGPPS(ph)PVK_
RLF	Phosphorylation	S632	2.384	2.155	_S(ph)PSAIPEQNHSLNDQAK_
RPA1	Ubiquitylation	K163	2.827	4.085	_AYGASK(gl)TFGK_
RPA1	Ubiquitylation	K167	3.009	3.243	_TFGK(gl)AAGPSLSHTSGGTQSK_
RPA1	Ubiquitylation	K183	0.925		_AAGPSLSHTSGGTQSK(gl)VVPIASLTPYQSK_
RPA1	Ubiquitylation	K263	-1.803		_GTLK(gl)IANK_
RPA1	Ubiquitylation	K267	2.751		_IANK(gl)QFTAVK_
RPA1	Ubiquitylation	K331	3.112	4.066	_SYEDATK(gl)ITVR_
RPA1	Ubiquitylation	K410	2.458		_SLSVLSSSTIIANPDIPEAYK(gl)LR_
RPA1	Ubiquitylation	K489	0.465	2.335	_K(gl)VIDQQNGLYR_
RPA1	Ubiquitylation	K588	-0.055		_IK(gl)ATVMDVKPVDYR_
RPA1	Ubiquitylation	K595	1.201		_ATVMDVK(gl)PVDYR_
SMC1B	Ubiquitylation	K529	-1.309		_K(gl)YQLAVTK_
SMC2	Ubiquitylation	K1026	0.131	-0.616	_ILTTIEDLDQKK(gl)_
SMC3	Ubiquitylation	K106	0.087		_K(gl)DQYFLDKK_
SMC3	Ubiquitylation	K140	-0.351	0.443	_SNPYYIVK(gl)QGK_
SMC3	Ubiquitylation	K143	-1.015	0.329	_QGK(gl)INQMATAPDSQR_
SMC3	Ubiquitylation	K172	0.044	0.537	_VYDERK(gl)EESISLMK_
SMC3	Ubiquitylation	K180	0.000		_KEESISLM(ox)K(gl)ETEGKR_
SMC3	Ubiquitylation	K188	0.711		_EK(gl)INELLK_
SMC3	Ubiquitylation	K194	0.447	0.876	_INELLK(gl)YIEER_
SMC3	Ubiquitylation	K459	0.122		_YYEVK(gl)NK_
SMC3	Ubiquitylation	K461	0.122		_YYEVK(gl)NK_
SMC3	Ubiquitylation	K968	1.085		_K(gl)LEQCNTELKK_
SMC3	Ubiquitylation	K977	0.607		_KLEQCNTELK(gl)K_
SMC3	Ubiquitylation	K1025	0.441		_K(gl)YEAIQLTFK_
SMC3	Ubiquitylation	K1034	0.865		_KYEAIQLTFK(gl)QVSK_
SMC3	Ubiquitylation	K1038	0.959		_QVSK(gl)NFSEVFQK_
SMC3	Phosphorylation	S1065	1.113		_GDVEGS(ph)QSQDEGEGSGESER_
SMC3	Phosphorylation	S1067	1.197	1.207	_KGDVEGSQS(ph)QDEGEGSGESER_
SMC3	Phosphorylation	S1081	3.980	3.931	_GS(ph)GSQSSVPSVDQFTGVGIR_
SMC3	Phosphorylation	S1083	4.043	3.766	_GSGS(ph)QSSVPSVDQFTGVGIR_
SMC3	Phosphorylation	S1085		3.316	_GSGSQS(ph)SVPSVDQFTGVGIR_
SMC3	Phosphorylation	S1086		3.710	_GSGSQSS(ph)VPSVDQFTGVGIR_
SMC3	Ubiquitylation	K1105	0.634	1.207	_VSFTGK(gl)QGEMR_
SMC3	Ubiquitylation	K1194	0.816		_NK(gl)VSHIDVITAEMAK_
SMC4	Phosphorylation	S22	-2.829	-1.797	_RREEGPPPPS(ph)PDGASSDAEPEPPSGR_
SMC4	Phosphorylation	S27	-2.450	-3.129	_EEGPPPPSPDGAS(ph)SDAEPEPPSGR_
SMC4	Phosphorylation	S28	-2.042	-2.174	_RREEGPPPPSPDGASS(ph)DAEPEPPSGR_
SMC4	Phosphorylation	T39		0.060	_T(ph)ESPATAAETASEELDNR_
SMC4	Phosphorylation	S41	0.075	0.293	_TES(ph)PATAAETASEELDNR_
SMC4	Phosphorylation	T44	0.131	-0.179	_TESPAT(ph)AAETASEELDNR_
SMC4	Phosphorylation	T48	0.032	0.292	_TES(ph)PATAAET(ph)ASEELDNR_
SMC4	Phosphorylation	S50	-0.579	-0.123	_TES(ph)PATAAETAS(ph)EELDNR_
SMC4	Ubiquitylation	K106	-0.826	-0.664	_ILGPFHK(gl)R_
SMC4	Ubiquitylation	K202	-0.181	-0.066	_DNTSVYHISGK(gl)K_
SMC4	Ubiquitylation	K207		-0.089	_TFK(gl)DVGNLLR_
SMC4	Ubiquitylation	K268	-0.240	-0.861	_LNEPIK(gl)VLCR_
SMC4	Ubiquitylation	K416	0.450	-0.040	_LEK(gl)QLQK_
SMC4	Ubiquitylation	K607		0.339	_VLDAIIQEK(gl)K_
SMC4	Ubiquitylation	K608		0.339	_VLDAIIQEK(gl)K_
SMC4	Ubiquitylation	K968		-0.407	_SLEDK(gl)AAEVVK_
SMC4	Ubiquitylation	K974		-0.407	_SLEDK(gl)AAEVVK_
SMC4	Ubiquitylation	K1112	-0.254	-0.466	_VAELDK(gl)ITYER_
SMC4	Ubiquitylation	K1187	0.176		_K(gl)IFNLSGGEK_
SMC4	Ubiquitylation	K1273		-0.330	_TYNITK(gl)SVAVNPK_
SMC4	Ubiquitylation	K1285		-1.105	_EIASK(gl)GLC_
SMCHD1	Ubiquitylation	K812	-0.365	-0.476	_LQVVLNESNADTYAGRPLPSK(gl)AIK_
SMCHD1	Ubiquitylation	K1374	0.361		_LNVK(gl)YDK_
TP53	Ubiquitylation	K120	-0.188		_LGFLHSGTAK(gl)SVTCTYSPALNK_
TP53	Ubiquitylation	K164	0.157	-1.260	_AMAIYK(gl)QSQHMTEVVR_
TP53	Phosphorylation	S314	-0.695	-1.000	_ALPNNTSS(ph)SPQPK_
TP53	Phosphorylation	S315	-0.762	-0.959	_RALPNNTSSS(ph)PQPK_
TP53	Ubiquitylation	K320	-0.978		_ALPNNTSSSPQPKK(gl)_
TP53	Ubiquitylation	K357	-0.231	-0.823	_ELNEALELKDAQAGK(gl)EPGGSR_
YY1	Phosphorylation	S247	0.269	0.058	_DIDHETVVEEQIIGENS(ph)PPDYSEYMTGK_
YY1	Ubiquitylation	K301	0.655	0.006	_TIACPHK(gl)GCTK_
YY1	Ubiquitylation	K339	0.205		_AFVESSK(gl)LKR_