RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
HERC1	3	-1.750	2.210
AARS	2	-0.590	1.990					1.091
AARS	2	-0.590	1.990	0.992
NBN	2	-0.220	-0.170		0.708	0.569	-0.563	0.354
EI24	2	0.040	-0.170				1.100	0.629
PAFAH1B1	1	0.820	-0.330				1.632	0.711
CAMK2B	1	1.200	-0.790
CAMK2B	1	1.200	-0.790		-0.654	0.073
CAMK2B	1	1.200	-0.790	-0.619			0.544	0.125
CAMK2B	1	1.200	-0.790				0.559	1.698
DLG4	1	-0.020	0.320	1.552			0.102	0.488
HEXB	0	-0.370	0.060				0.103
RBFOX1	0	1.500	-0.870		-0.716	-0.518
RBFOX1	0	1.500	-0.870	-0.200			0.121	0.211
RBFOX2	0	0.590	-0.700		-0.716	-0.518
RBFOX2	0	0.590	-0.700	-0.200			0.121	0.211
RBFOX3	0				-0.716	-0.518
RBFOX3	0			-0.200			0.121	0.211
SLC1A3	0	-1.000	1.770				-0.132	-0.393
APLP2	0	-0.080	0.400
MYH10	0	0.740	-0.560	0.036			0.397	0.165
MYH10	0	0.740	-0.560		-0.265	-0.438
APP	0	0.100	-0.260					0.285
ATP2B2	0	1.540	-0.900				0.593	0.487
ABR	0	-1.000	1.510
TPP1	0	-0.540	0.760	0.431			1.429	1.399
RAC3	0	0.210	0.290
NLGN2	0	0.140	0.230
BCR	0	-0.110	-0.410
BCR	0	0.680	-0.700
BCR	0	-0.110	-0.410	1.326
BCR	0	0.680	-0.700	1.326
GM2A	0	1.660	-0.700
GIGYF2	0	-0.660	0.630
GIGYF2	0	-0.660	0.630	-0.833			-0.034	-0.175

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
AARS	Ubiquitylation	K338		0.835	_YAHEK(gl)LNASR_
AARS	Phosphorylation	S563	0.468	0.212	_VDDSS(ph)EDKTEFTVK_
AARS	Ubiquitylation	K625	-0.494	-0.399	_SVLGEADQK(gl)GSLVAPDR_
AARS	Ubiquitylation	K650	0.052	0.332	_GAMSTQQIK(gl)K_
AARS	Ubiquitylation	K677		0.025	_AVYTQDCPLAAAK(gl)AIQGLR_
AARS	Ubiquitylation	K762	-0.271	0.079	_IVAVTGAEAQK(gl)ALR_
AARS	Ubiquitylation	K820	2.550	4.438	_DELRETLK(gl)SLK_
ABR	Phosphorylation	S72	-1.041	-1.433	_SQGGGDGVS(ph)PTPPEGLAPGVEAGK_
APLP2	Ubiquitylation	K744	-1.204		_HLNK(gl)M(ox)QNHGYENPTYK_
APP	Ubiquitylation	K751	-1.778	-1.280	_HLSK(gl)M(ox)QQNGYENPTYK_
ATP2B2	Ubiquitylation	K15	1.343		_(ac)GDMANNSVAYSGVK(gl)NSLK_
ATP2B2	Phosphorylation	S17	0.515	0.902	_NS(ph)LKEANHDGDFGITLAELR_
ATP2B2	Ubiquitylation	K19	1.343		_(ac)GDMANNSVAYSGVK(gl)NSLK_
ATP2B2	Ubiquitylation	K48	1.326		_K(gl)IQESYGDVYGICTK_
ATP2B2	Ubiquitylation	K62	0.733		_IQESYGDVYGICTK(gl)LK_
ATP2B2	Ubiquitylation	K64	0.642	0.801	_LK(gl)TSPNEGLSGNPADLER_
ATP2B2	Ubiquitylation	K193	-0.102	0.773	_IEQEQK(gl)FTVIR_
ATP2B2	Ubiquitylation	K365		0.997	_SVLQGK(gl)LTK_
ATP2B2	Ubiquitylation	K747	1.309		_NEK(gl)GEIEQER_
ATP2B2	Ubiquitylation	K773		-0.186	_SSPTDK(gl)HTLVK_
ATP2B2	Ubiquitylation	K807	0.010	1.083	_QVVAVTGDGTNDGPALKK(gl)_
ATP2B2	Ubiquitylation	K921	-0.811	0.202	_NK(gl)PLISR_
ATP2B2	Phosphorylation	S1177	0.214	0.537	_S(ph)SIHNFM(ox)THPEFR_
ATP2B2	Phosphorylation	S1178	0.214	0.537	_S(ph)SIHNFM(ox)THPEFR_
ATP2B2	Phosphorylation	S1193	-0.342	-0.629	_IEDS(ph)EPHIPLIDDTDAEDDAPTKR_
BCR	Phosphorylation	S122	-1.850	-1.388	_ASASRPQPAPADGADPPPAEEPEARPDGEGS(ph)PGK_
BCR	Phosphorylation	S354	-0.057	0.015	_VS(ph)PSPTTYR_
BCR	Phosphorylation	S459	-0.638	-0.740	_HQDGLPYIDDS(ph)PSSSPHLSSK_
BCR	Phosphorylation	S1035	0.931	1.055	_LSVKFNS(ph)R_
BCR	Ubiquitylation	K1066		0.971	_SK(gl)VPYIVR_
CAMK2B	Ubiquitylation	K147		-1.064	_DLKPENLLLASK(gl)CK_
CAMK2B	Ubiquitylation	K251	-0.437		_DLINK(gl)MLTINPAK_
DLG4	Phosphorylation	S102	-1.455		_SKPSEPIQPVNTWEISSLPSSTVTSETLPSSLS(ph)PSVEK_
DLG4	Phosphorylation	T115	-0.707	-1.378	_YQDEDT(ph)PPQEHISPQITNEVIGPELVHVSEK_
DLG4	Phosphorylation	S122		-1.073	_YQDEDTPPQEHIS(ph)PQITNEVIGPELVHVSEK_
DLG4	Phosphorylation	S158		0.773	_NLSEIENVHGFVSHSHIS(ph)PIK_
DLG4	Ubiquitylation	K321	1.264	1.435	_IMEIK(gl)LIK_
DLG4	Ubiquitylation	K361	0.180		_IIEGGAAHK(gl)DGK_
DLG4	Ubiquitylation	K452	-0.704		_YSPVSK(gl)AVLGDDEITREPR_
DLG4	Ubiquitylation	K556	0.105		_FEAK(gl)IHDLR_
DLG4	Phosphorylation	S573	0.697		_EQM(ox)M(ox)NSSISSGS(ph)GSLR_
DLG4	Phosphorylation	S575	0.255	0.729	_EQMMNSSISSGSGS(ph)LR_
DLG4	Ubiquitylation	K843	1.259		_SMENIMEMNK(gl)R_
EI24	Phosphorylation	S46	1.497	0.314	_RAS(ph)SVLAQR_
EI24	Phosphorylation	S330	3.730	2.164	_FPSPHPS(ph)PAK_
GIGYF2	Phosphorylation	S20	1.394	0.572	_ALSS(ph)GGSITS(ph)PPLSPALPK_
GIGYF2	Phosphorylation	T25	-1.198	-0.724	_ALSSGGSIT(ph)SPPLSPALPK_
GIGYF2	Phosphorylation	S26	-1.157	-0.630	_ALSSGGSITS(ph)PPLSPALPK_
GIGYF2	Phosphorylation	S30	-1.557	-1.373	_ALSSGGSITS(ph)PPLS(ph)PALPK_
GIGYF2	Phosphorylation	T404	-0.311	-0.134	_PGT(ph)PSDHQSQEASQFER_
GIGYF2	Ubiquitylation	K1007	0.724	-1.404	_ALQQQQQQQQQK(gl)LSGWGNVSKPSGTTK_
GIGYF2	Ubiquitylation	K1016		-0.562	_LSGWGNVSK(gl)PSGTTK_
GIGYF2	Ubiquitylation	K1106	0.994		_NSNMGFWDDAVK(gl)EVGPR_
GIGYF2	Ubiquitylation	K1125	0.915	-0.414	_NNASLSK(gl)SVGVSNR_
GM2A	Ubiquitylation	K179		0.422	_IESVLSSSGK(gl)R_
HERC1	Phosphorylation	S1428	0.599	2.067	_RVS(ph)TDLPEGQDVYTAACNSVIHR_
HERC1	Phosphorylation	S2720	0.776	0.232	_RQS(ph)LTSPDSQSAR_
HERC1	Ubiquitylation	K2769	0.446	2.108	_QIAK(gl)AMEATGAR_
HERC1	Ubiquitylation	K2881	0.928	1.146	_HK(gl)FDLAAR_
HERC1	Ubiquitylation	K3355	0.181		_LRPNYDK(gl)SEVEK_
HERC1	Ubiquitylation	K3837		0.055	_TALK(gl)QQGVLGLNMAPCMR_
HERC1	Phosphorylation	S4393	5.329		_EVS(ph)IHTVRAR_
HERC1	Ubiquitylation	K4462	-1.280	-0.797	_SIGK(gl)TMVQGK_
MYH10	Phosphorylation	S225		-0.296	_DHNIPQES(ph)PKPVK_
MYH10	Ubiquitylation	K256	0.402		_QLLQANPILESFGNAKTVK(gl)_
MYH10	Ubiquitylation	K899	-1.210		_QEEELQAK(gl)DEELLK_
MYH10	Phosphorylation	S1979	-0.233	-0.052	_GGPISFS(ph)SSR_
MYH10	Phosphorylation	S1980	-0.231		_GGPISFSS(ph)SR_
MYH10	Phosphorylation	S1981	-0.541	-0.089	_GGPISFSSS(ph)R_
MYH10	Phosphorylation	S1998	0.372	0.302	_QLHLEGASLELS(ph)DDDTESK_
NBN	Phosphorylation	T335		-1.121	_T(ph)TTPGPSLSQGVSVDEK_
NBN	Phosphorylation	S341	3.085		_TTTPGPS(ph)LSQGVSVDEK_
NBN	Phosphorylation	S343	3.710	3.629	_TTTPGPSLS(ph)QGVSVDEK_
NBN	Phosphorylation	S397	2.719	1.458	_MLS(ph)QDAPTVK_
NBN	Phosphorylation	S432	-0.192	-0.395	_IPNYQLS(ph)PTK_
NBN	Phosphorylation	T434	-0.188	-0.683	_IPNYQLSPT(ph)KLPSINK_
NBN	Phosphorylation	S615	1.985	4.691	_IS(ph)QENEIGKK_
NLGN2	Ubiquitylation	K748	0.088		_ELPPEEELVSLQLK(gl)R_
PAFAH1B1	Ubiquitylation	K76	-0.530		_LNEAK(gl)EEFTSGGPLGQK_
RAC3	Ubiquitylation	K153		-0.133	_EIGSVK(gl)YLECSALTQR_
RAC3	Ubiquitylation	K183		-1.447	_AVLCPPPVK(gl)K_
RAC3	Ubiquitylation	K184	-1.812	-1.447	_AVLCPPPVKK(gl)_
RBFOX1	Ubiquitylation	K218	0.113		_EK(gl)LHGTVVEGR_
RBFOX2	Ubiquitylation	K218	0.113		_EK(gl)LHGTVVEGR_
RBFOX3	Ubiquitylation	K218	0.113		_EK(gl)LHGTVVEGR_
SLC1A3	Ubiquitylation	K10	-0.133		_SNGEEPK(gl)MGGR_
SLC1A3	Ubiquitylation	K30	0.754	0.240	_TLLAK(gl)KK_
SLC1A3	Ubiquitylation	K118		0.315	_ASGK(gl)MGMR_
SLC1A3	Phosphorylation	S512	0.084	0.182	_DVEMGNS(ph)VIEENEMK_
SLC1A3	Ubiquitylation	K521	-0.077	-0.672	_K(gl)PYQLIAQDNETEKPIDSETKM_
SLC1A3	Ubiquitylation	K541	-0.417	-0.742	_KPYQLIAQDNETEKPIDSETK(gl)M_