RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
USP28	2	1.150	-0.550
USP47	2	0.370	-0.540	1.392
USP47	2	0.370	-0.540
BAK1	1	0.710	0.160				-0.419	2.039
MAPK9	1	0.110	-0.490
N4BP1	1	-1.890	2.620
N4BP1	1	-0.940	0.710
ATR	1	-1.040	0.920	0.671			1.041	0.708
RUVBL2	1	-2.210	5.080	0.796	0.479	0.807	0.364	0.491
NOC2L	1	1.010	-0.760	-0.322	0.179	0.516	0.566	0.288
NOC2L	1	1.010	-0.760
TMEM161A	0	0.050	0.400				-0.241	-0.062
NEDD4	0	-1.320	1.730
BAX	0	1.590	-1.170				0.811	0.359
YY1	0	-0.370	0.560	0.179	0.557	0.050	-0.096	0.076
NFATC4	0	0.060	0.210
INO80	0	1.190	-1.020				0.414	0.682
MYC	0	0.170	0.550	-2.443	-0.949	-0.454		-1.290
TP53	0	-1.070	1.050	-2.808	0.076	-0.094	0.436	0.497
PIK3R1	0	1.910	-1.220				-0.441	0.147
CDC25A	0	0.260	-0.100
TRIAP1	0	-0.430	0.040
AURKB	0	-0.840	1.170	-0.562			-0.744	-0.302

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ATR	Ubiquitylation	K32		-0.929	_ELGSATPEEYNTVVQK(gl)PR_
ATR	Phosphorylation	S435	0.516	0.284	_RLS(ph)SSLNPSK_
ATR	Ubiquitylation	K746		-1.823	_NLK(gl)ATSQHECSSSQLK_
ATR	Ubiquitylation	K1019	1.662		_TLGK(gl)QLNVNRR_
ATR	Ubiquitylation	K1600	-0.437		_FQALK(gl)AEK_
ATR	Ubiquitylation	K2106		-0.136	_AYEWEK(gl)AGR_
ATR	Ubiquitylation	K2604	0.657	1.118	_LQGVIK(gl)TR_
AURKB	Ubiquitylation	K56	-2.018	-2.920	_SNVQPTAAPGQK(gl)VMENSSGTPDILTR_
AURKB	Ubiquitylation	K87	-0.700	-1.401	_GK(gl)FGNVYLAR_
AURKB	Ubiquitylation	K164		-1.041	_GELYK(gl)ELQK_
AURKB	Ubiquitylation	K168	-0.421	-1.027	_ELQK(gl)SCTFDEQR_
AURKB	Ubiquitylation	K287		-0.625	_IVK(gl)VDLK_
BAX	Ubiquitylation	K57		-1.174	_MGGEAPELALDPVPQDASTK(gl)K_
BAX	Ubiquitylation	K58	-1.718	-1.174	_MGGEAPELALDPVPQDASTKK(gl)_
BAX	Ubiquitylation	K64	0.708	1.306	_LSECLK(gl)R_
CDC25A	Ubiquitylation	K120		1.111	_LLGCSPALK(gl)R_
MAPK9	Phosphorylation	Y185		3.533	_TACTNFMMTPY(ph)VVTR_
MYC	Phosphorylation	S20	-1.444	-1.145	_PLNVS(ph)FTNR_
MYC	Phosphorylation	T72	-1.699	-1.813	_FELLPT(ph)PPLS(ph)PSRR_
MYC	Phosphorylation	S76	-1.777	-1.435	_FELLPTPPLS(ph)PSR_
MYC	Phosphorylation	S81		0.459	_S(ph)GLCSPSYVAVTPFSLR_
MYC	Phosphorylation	S85	0.199	0.073	_SGLCS(ph)PSYVAVTPFSLR_
MYC	Ubiquitylation	K162	-2.475	-1.259	_LVSEK(gl)LASYQAAR_
MYC	Phosphorylation	S295		-0.903	_SESGS(ph)PSAGGHSKPPHSPLVLK_
MYC	Phosphorylation	S307		-1.486	_SES(ph)GSPSAGGHSKPPHS(ph)PLVLK_
MYC	Ubiquitylation	K340		-2.449	_VK(gl)LDSVR_
MYC	Ubiquitylation	K403		-3.432	_DQIPELENNEK(gl)APK_
N4BP1	Phosphorylation	T242	0.090	0.086	_AGT(ph)PVSELTK_
N4BP1	Phosphorylation	S300	0.738	1.001	_KQFS(ph)LENVQEGEILHDAK_
N4BP1	Ubiquitylation	K412	0.502		_NK(gl)GVYSSTNELTTDSTPK_
NEDD4	Phosphorylation	Y751		-0.924	_RGSLQAY(ph)TFEEQPTLPVLLPTSSGLPPGWEEK_
NEDD4	Ubiquitylation	K874	0.127		_LK(gl)IPAHLR_
NEDD4	Ubiquitylation	K882	-0.919	0.114	_GK(gl)TSLDTSNDLGPLPPGWEER_
NFATC4	Phosphorylation	S289	-1.594	-0.700	_RGS(ph)LGEEGSEPPPPPPLPLAR_
NFATC4	Phosphorylation	S311		0.305	_DPGS(ph)PGPFDYVGAPPAESIPQK_
NFATC4	Phosphorylation	S334	0.917	0.074	_RTS(ph)SEQAVALPR_
NOC2L	Phosphorylation	S49	-0.694	-0.494	_EAARS(ph)PDKPGGSPSASR_
NOC2L	Phosphorylation	S56	-1.635	-0.706	_SPDKPGGS(ph)PSASRR_
NOC2L	Ubiquitylation	K144		2.425	_K(gl)NSVPVTVAMVER_
NOC2L	Ubiquitylation	K226	-0.886	-0.310	_LLFGK(gl)VAK_
NOC2L	Ubiquitylation	K245		-1.994	_MLQPSSSPLWGK(gl)LR_
NOC2L	Ubiquitylation	K516		-0.170	_LSNVNLQEK(gl)AYR_
NOC2L	Ubiquitylation	K562		-0.563	_ECK(gl)VANYCR_
NOC2L	Ubiquitylation	K576	-1.085		_QVQQLLGK(gl)VQENSAYICSR_
NOC2L	Ubiquitylation	K637	0.193		_EIQLEISGK(gl)ER_
NOC2L	Ubiquitylation	K649	-1.048	-0.355	_LEDLNFPEIK(gl)R_
NOC2L	Phosphorylation	S672	0.375	0.458	_DLFDLNS(ph)SEEDDTEGFSER_
NOC2L	Phosphorylation	S673	0.408	0.312	_DLFDLNSS(ph)EEDDTEGFSER_
RUVBL2	Ubiquitylation	K9	-0.203	-0.294	_(ac)ATVTATTK(gl)VPEIRDVTR_
RUVBL2	Ubiquitylation	K160	0.331		_VGK(gl)LTLK_
RUVBL2	Ubiquitylation	K186	-0.554		_DK(gl)VQAGDVITIDK_
RUVBL2	Ubiquitylation	K234	-0.191	-0.742	_FVQCPDGELQK(gl)R_
RUVBL2	Ubiquitylation	K365	-0.355	-0.601	_LLIVSTTPYSEK(gl)DTK_
RUVBL2	Ubiquitylation	K368		-0.345	_LLIVSTTPYSEKDTK(gl)QILR_
RUVBL2	Ubiquitylation	K417		-1.196	_K(gl)GTEVQVDDIK(gl)R_
RUVBL2	Ubiquitylation	K427	0.479	0.403	_K(gl)GTEVQVDDIK(gl)R_
TMEM161A	Ubiquitylation	K41		0.265	_YK(gl)HPSEEELR_
TMEM161A	Ubiquitylation	K54	-1.514	-1.327	_ALAGK(gl)PRPR_
TP53	Ubiquitylation	K120	-0.188		_LGFLHSGTAK(gl)SVTCTYSPALNK_
TP53	Ubiquitylation	K164	0.157	-1.260	_AMAIYK(gl)QSQHMTEVVR_
TP53	Phosphorylation	S314	-0.695	-1.000	_ALPNNTSS(ph)SPQPK_
TP53	Phosphorylation	S315	-0.762	-0.959	_RALPNNTSSS(ph)PQPK_
TP53	Ubiquitylation	K320	-0.978		_ALPNNTSSSPQPKK(gl)_
TP53	Ubiquitylation	K357	-0.231	-0.823	_ELNEALELKDAQAGK(gl)EPGGSR_
TRIAP1	Ubiquitylation	K50	-0.199		_YQQCVQK(gl)AIK_
USP28	Phosphorylation	S495	2.593	2.418	_ESTSTESSS(ph)QDVESTFSSPEDSLPK_
USP28	Phosphorylation	S1053	-0.658	-0.698	_EPPTIRPNS(ph)PYDLCSR_
USP47	Phosphorylation	S832	0.001	-0.284	_LFVLLPEQS(ph)PVSYSK_
USP47	Phosphorylation	S910	1.689	2.323	_STETSDFENIES(ph)PLNER_
USP47	Phosphorylation	T932		0.805	_ELEQHIQT(ph)SDPENFQSEER_
USP47	Phosphorylation	S933	0.302	0.148	_ELEQHIQTS(ph)DPENFQSEER_
YY1	Phosphorylation	S247	0.269	0.058	_DIDHETVVEEQIIGENS(ph)PPDYSEYMTGK_
YY1	Ubiquitylation	K301	0.655	0.006	_TIACPHK(gl)GCTK_
YY1	Ubiquitylation	K339	0.205		_AFVESSK(gl)LKR_