RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
PSMD10	2	-1.900	3.850	0.390			2.518
USP47	2	0.370	-0.540	1.392
USP47	2	0.370	-0.540
DDX3X	2	-0.250	0.370	0.081	-0.794	-0.166	-0.062	-0.025
TRIM32	1	0.220	0.640	-1.832			-0.176	-1.091
RPS6KA3	1	-1.550	2.890
FGFR1OP	1	-0.600	0.800
RHOA	0	-0.510	1.370	-0.485			0.532	0.279
ACSL4	0	1.120	-0.740	-0.154		-1.054	0.236	0.117
DERL2	0	1.140	0.560
SLC9A1	0	1.000	-1.310
EP300	0	-1.210	1.320	-1.089			-1.694	-0.723
CSNK2A1	0	0.050	-0.020	0.030	-0.550	1.362	0.022	-0.045
ADNP2	0	0.130	0.020				0.959	0.001
MTPN	0	-1.050	2.170
TGFBR1	0	-0.260	0.020
DNPH1	0	0.920	-0.490
RPS6KA1	0	-0.160	-0.660
RPS6KA1	0	-0.160	-0.660
ZNF639	0	-0.250	-0.510		-0.298	0.605
EXOSC9	0			0.080	0.519	0.128	-0.495	0.107
INO80	0	1.190	-1.020				0.414	0.682
EXOSC2	0	-0.410	0.130	-0.167	0.162	0.416	-0.803	0.148
ADAM10	0	1.400	-1.040				-0.111	0.009
LEF1	0	-0.710	0.790	-0.741
ERBB2	0	-1.310	1.360
AKT1	0	-0.050	0.700
AKT1	0	0.860	-0.040
S100A8	0	-0.880	1.550			-3.285		-4.740
ADAM17	0	0.520	-0.620
SUPV3L1	0	1.500	-0.040	0.342	0.274	0.234	0.059	0.110
S100A9	0	-1.350	2.240					-4.360
BCL2	0	0.910	-0.740
SFN	0	0.890	0.120				-4.300
NOL8	0	0.110	-0.300				0.212	0.324

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ACSL4	Ubiquitylation	K49	-1.745		_AK(gl)PTSDKPGSPYR_
ACSL4	Ubiquitylation	K54	-1.457		_AKPTSDK(gl)PGSPYR_
ACSL4	Ubiquitylation	K354	0.109	0.988	_IGYSSPLTLSDQSSK(gl)IK_
ACSL4	Ubiquitylation	K356	0.153	0.800	_IGYSSPLTLSDQSSKIK(gl)_
ACSL4	Ubiquitylation	K500	-1.017	-0.639	_LK(gl)DWQEGGYTINDKPNPR_
ACSL4	Ubiquitylation	K621	0.455	0.184	_SDQSYVISFVVPNQK(gl)R_
ACSL4	Ubiquitylation	K661	0.291	0.519	_EAANAM(ox)K(gl)LER_
ACSL4	Ubiquitylation	K670	-0.058	-0.343	_FEIPIK(gl)VR_
ACSL4	Ubiquitylation	K702	0.575		_NHYLK(gl)DIER_
ADAM10	Ubiquitylation	K721	-2.406		_LPPPKPLPGTLK(gl)R_
ADAM17	Phosphorylation	S791	-0.594	0.152	_S(ph)FEDLTDHPVTR_
ADNP2	Ubiquitylation	K872	-1.370	-1.320	_VRPQAEGTPGSTGK(gl)R_
AKT1	Phosphorylation	S124	0.252	0.311	_SGS(ph)PSDNSGAEEMEVSLAKPK_
AKT1	Phosphorylation	S126	-0.241		_SGSPS(ph)DNSGAEEM(ox)EVSLAK_
AKT1	Ubiquitylation	K301	0.988		_EGIK(gl)DGATMK_
BCL2	Ubiquitylation	K22	1.480		_YIHYK(gl)LSQR_
CSNK2A1	Ubiquitylation	K71	0.008		_ILK(gl)PVKK_
CSNK2A1	Ubiquitylation	K329	-0.661	-0.889	_EAMEHPYFYTVVK(gl)DQAR_
DDX3X	Ubiquitylation	K78	1.311		_DK(gl)DAYSSFGSR_
DDX3X	Ubiquitylation	K93	0.657	1.846	_GK(gl)SSFFSDR_
DDX3X	Phosphorylation	S94	0.172		_S(ph)SFFSDRGSGSR_
DDX3X	Phosphorylation	S102	0.008	0.230	_SSFFSDRGS(ph)GSR_
DDX3X	Phosphorylation	S104	-0.231	0.320	_SSFFSDRGSGS(ph)R_
DDX3X	Ubiquitylation	K130	1.572	1.502	_SGFGK(gl)FER_
DDX3X	Ubiquitylation	K347	-0.406	0.360	_GK(gl)IGLDFCK_
DDX3X	Ubiquitylation	K503	-0.796		_SGK(gl)SPILVATAVAAR_
DDX3X	Phosphorylation	S602		-0.349	_S(ph)SRFSGGFGAR_
DDX3X	Phosphorylation	S603		-0.330	_SS(ph)RFSGGFGAR_
DDX3X	Phosphorylation	S606	-0.248	-0.447	_FS(ph)GGFGAR_
DERL2	Ubiquitylation	K200		0.298	_ILK(gl)TPSILK_
DNPH1	Ubiquitylation	K182		0.862	_AVAFNK(gl)R_
EP300	Phosphorylation	S1038	-0.672	-0.349	_TEIKEEEDQPSTSATQSS(ph)PAPGQSK_
EP300	Phosphorylation	S1726	0.994	0.627	_LGLGLDDESNNQQAAATQS(ph)PGDSRR_
EP300	Phosphorylation	S2328	-1.092	0.725	_PQSQPPHSSPS(ph)PR_
ERBB2	Ubiquitylation	K200		-2.073	_ACHPCSPMCK(gl)GSR_
ERBB2	Ubiquitylation	K369		-0.742	_AVTSANIQEFAGCKK(gl)_
ERBB2	Ubiquitylation	K747	-0.505	-0.019	_GIWIPDGENVK(gl)IPVAIK_
ERBB2	Ubiquitylation	K854	-0.859		_NVLVK(gl)SPNHVK_
ERBB2	Phosphorylation	S1054	-0.476	-0.706	_S(ph)GGGDLTLGLEPSEEEAPR_
EXOSC2	Ubiquitylation	K70		-0.209	_LICVK(gl)ALK_
EXOSC2	Ubiquitylation	K97		0.060	_WK(gl)VETNSR_
EXOSC2	Phosphorylation	S175	-0.346	-0.185	_LGQGVLVQVS(ph)PSLVK_
EXOSC2	Ubiquitylation	K180		-0.618	_LGQGVLVQVSPSLVK(gl)R_
EXOSC9	Ubiquitylation	K52	0.195		_ISFGTDYGCCIVELGK(gl)TR_
EXOSC9	Phosphorylation	S306	0.254	0.180	_APIDTS(ph)DVEEK_
FGFR1OP	Phosphorylation	S156	-0.647	-0.663	_EKGPTTGEGALDLSDVHS(ph)PPKS(ph)PEGK_
FGFR1OP	Phosphorylation	S160	-0.079	-0.321	_EKGPTTGEGALDLSDVHS(ph)PPKS(ph)PEGK_
FGFR1OP	Phosphorylation	T170	-0.492	-1.069	_TSAQTT(ph)PSKIPR_
FGFR1OP	Phosphorylation	S326		1.712	_IGS(ph)LGLGTGEDDDYVDDFNSTSHR_
LEF1	Ubiquitylation	K88	-0.867	-0.222	_ESLEEAAK(gl)R_
MTPN	Ubiquitylation	K4	0.021		_(ac)CDK(gl)EFMWALK_
MTPN	Phosphorylation	T31		0.488	_GEDVNRT(ph)LEGGR_
MTPN	Ubiquitylation	K90	0.537	-0.107	_LLLSK(gl)GADK_
MTPN	Ubiquitylation	K97	-0.211		_TVK(gl)GPDGLTAFEATDNQAIK_
NOL8	Phosphorylation	S365		0.615	_VSCHDS(ph)DDDIMR_
NOL8	Phosphorylation	S1099	0.262	0.418	_NSS(ph)PGEASLLEK_
PSMD10	Ubiquitylation	K30	0.195	0.473	_LEELKESILADK(gl)SLATR_
PSMD10	Ubiquitylation	K221	0.332		_GGLGLILK(gl)R_
RHOA	Ubiquitylation	K6	0.708		_K(gl)KLVIVGDGACGK_
RHOA	Ubiquitylation	K7	0.708		_K(gl)KLVIVGDGACGK_
RHOA	Ubiquitylation	K118	-0.408		_HFCPNVPIILVGNK(gl)K_
RHOA	Ubiquitylation	K119	-0.408		_HFCPNVPIILVGNK(gl)K_
RHOA	Ubiquitylation	K135	-0.528	-0.796	_MK(gl)QEPVKPEEGRDMANR_
RHOA	Ubiquitylation	K162	0.345	0.453	_IGAFGYMECSAK(gl)TK_
RPS6KA1	Phosphorylation	S227	0.363	0.496	_AYS(ph)FCGTVEYM(ox)APEVVNR_
RPS6KA1	Phosphorylation	T231	0.315		_KAYSFCGT(ph)VEYMAPEVVNR_
RPS6KA1	Ubiquitylation	K316		-1.156	_LGSGPDGAEEIK(gl)R_
RPS6KA1	Phosphorylation	T359	-0.149	-0.339	_T(ph)PKDSPGIPPSAGAHQLFR_
RPS6KA1	Phosphorylation	S363	-0.711	-0.697	_TPKDS(ph)PGIPPSAGAHQLFR_
RPS6KA1	Ubiquitylation	K566		-0.152	_ICDFGFAK(gl)QLR_
RPS6KA3	Phosphorylation	S227	0.363	0.496	_AYS(ph)FCGTVEYM(ox)APEVVNR_
RPS6KA3	Phosphorylation	T231	0.315		_KAYSFCGT(ph)VEYMAPEVVNR_
RPS6KA3	Ubiquitylation	K322	-0.076	-0.376	_LGAGPDGVEEIK(gl)R_
RPS6KA3	Phosphorylation	T365	-0.892	-1.003	_T(ph)PKDSPGIPPSANAHQLFR_
RPS6KA3	Phosphorylation	S369	-0.621	-0.862	_TPKDS(ph)PGIPPSANAHQLFR_
RPS6KA3	Ubiquitylation	K566		-0.152	_ICDFGFAK(gl)QLR_
RPS6KA3	Phosphorylation	S715	-0.923	-0.880	_NQS(ph)PVLEPVGR_
SFN	Ubiquitylation	K11	0.561	0.388	_AK(gl)LAEQAER_
SFN	Ubiquitylation	K49	-0.093	0.337	_NLLSVAYK(gl)_
SLC9A1	Phosphorylation	S693	0.458	0.404	_INNYLTVPAHKLDS(ph)PTM(ox)SR_
SLC9A1	Phosphorylation	S703	-0.097	0.010	_IGS(ph)DPLAYEPK_
SLC9A1	Phosphorylation	S785	-0.871	-0.971	_ETSSPGTDDVFTPAPSDS(ph)PSSQR_
SUPV3L1	Phosphorylation	S725	-0.599	-0.964	_ATEPPS(ph)PDAGELSLASR_
TGFBR1	Ubiquitylation	K449	-0.991		_VVCEQK(gl)LRPNIPNR_
TGFBR1	Ubiquitylation	K502	0.553	0.430	_TLSQLSQQEGIK(gl)M_
TRIM32	Ubiquitylation	K175	0.333	-0.305	_AALEGVSK(gl)DLQAR_
TRIM32	Ubiquitylation	K204		1.221	_K(gl)FFTGSLAEVEK_
TRIM32	Ubiquitylation	K405	2.753		_GFLK(gl)EIRR_
TRIM32	Ubiquitylation	K506	0.638		_GSGVVK(gl)YSCLCSAVRPK_
USP47	Phosphorylation	S832	0.001	-0.284	_LFVLLPEQS(ph)PVSYSK_
USP47	Phosphorylation	S910	1.689	2.323	_STETSDFENIES(ph)PLNER_
USP47	Phosphorylation	T932		0.805	_ELEQHIQT(ph)SDPENFQSEER_
USP47	Phosphorylation	S933	0.302	0.148	_ELEQHIQTS(ph)DPENFQSEER_
ZNF639	Phosphorylation	S88	1.106	0.234	_NQNYLVPS(ph)PVLR_
ZNF639	Ubiquitylation	K369	0.828		_ITFDK(gl)CK_