RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
TRIM24	2	0.580	-0.300		-1.173	-0.067	-0.484	-0.364
PSMC4	1			-0.111			1.993	0.557
PSMC5	1	0.000	-0.100
PSMC5	1	0.000	-0.100	-0.084		0.014	0.198	-0.612
PSMC1	1	-0.370	0.950	-0.345	-0.122	0.523	0.050	0.292
SARS2	1	-1.700	3.020				-1.125	-0.539
SARS2	1	0.940	-0.990				-1.125	-0.539
SARS2	1	-1.700	3.020		-0.204	-0.793
SARS2	1	0.940	-0.990		-0.204	-0.793
CUL2	1	-1.790	3.760	-0.293	0.044	0.860	-0.146	0.162
CUL2	1	-1.790	3.760
TRAF2	1	-0.570	0.540
TRAF2	1	-0.570	0.540
CLN6	1	0.190	-0.280
PSMC3	1			-0.227		-0.102	0.203	1.582
PJA1	1	-2.000	3.400
UBR2	0	-0.250	0.600	-1.757
RBX1	0	0.920	-0.940	-0.015			-0.422
PSMC6	0	1.170	-0.580	-0.025		0.192
LONP2	0	0.380	-0.520				-0.179	0.071
LNPEP	0	0.680	0.260				0.752	0.610
LNPEP	0	0.910	-0.940				0.752	0.610
UCHL3	0	-0.250	0.500				0.854	0.717
PPT1	0	1.320	-0.730
MDM2	0	-0.210	0.080
AKT1	0	-0.050	0.700
AKT1	0	0.860	-0.040
UBR1	0	-0.510	0.110
PSMC2	0	0.410	-0.640	-0.349		-0.102	-0.395	-0.245
BTRC	0	-0.780	0.690	0.532			-1.791	0.313
TPP1	0	-0.540	0.760	0.431			1.429	1.399
NCCRP1	0	-0.430	0.240					-3.654
LONP1	0	-0.080	-0.060	0.483	0.449	-1.109	1.066	0.781
SIAH1	0	1.220	-0.570
ATG7	0	-0.140	0.720	0.708
MTOR	0	-0.680	0.150	0.757			0.074	0.101

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
AKT1	Phosphorylation	S124	0.252	0.311	_SGS(ph)PSDNSGAEEMEVSLAKPK_
AKT1	Phosphorylation	S126	-0.241		_SGSPS(ph)DNSGAEEM(ox)EVSLAK_
AKT1	Ubiquitylation	K301	0.988		_EGIK(gl)DGATMK_
BTRC	Ubiquitylation	K466		0.325	_IVSGAYDGKIK(gl)_
CLN6	Phosphorylation	S63	1.677	1.381	_HGS(ph)VSADEAAR_
CUL2	Ubiquitylation	K35	1.454		_VVDFDETWNK(gl)LLTTIK_
CUL2	Ubiquitylation	K257	0.023		_QEASNLLQESNCSQYMEK(gl)VLGR_
CUL2	Ubiquitylation	K401	0.064	-0.162	_ALTSVVNYREPK(gl)SVCK_
CUL2	Ubiquitylation	K423	-0.295		_SAK(gl)GMTENEVEDR_
LNPEP	Phosphorylation	S91	0.531	0.825	_SSGLRNS(ph)ATGYR_
MDM2	Phosphorylation	S166	0.576	1.068	_AIS(ph)ETEENSDELSGER_
MDM2	Ubiquitylation	K334		-0.872	_ENWLPEDK(gl)GK_
MDM2	Ubiquitylation	K336		-0.872	_ENWLPEDK(gl)GK_
MDM2	Ubiquitylation	K363		0.883	_LENSTQAEEGFDVPDCK(gl)K_
MDM2	Ubiquitylation	K364		0.883	_LENSTQAEEGFDVPDCK(gl)K_
MDM2	Ubiquitylation	K473		0.806	_NK(gl)PCPVCR_
MTOR	Ubiquitylation	K309	-0.762	0.065	_DLMGFGTK(gl)PR_
MTOR	Ubiquitylation	K1257	-1.167	-0.901	_SGQGDALASGPVETGPMKK(gl)_
MTOR	Ubiquitylation	K1395		-1.255	_AYAK(gl)ALHYK_
MTOR	Ubiquitylation	K2066		-1.004	_GPQTLK(gl)ETSFNQAYGR_
MTOR	Ubiquitylation	K2166		-1.304	_IQSIAPSLQVITSK(gl)QRPR_
MTOR	Phosphorylation	T2471		0.329	_KT(ph)GTTVPESIHSFIGDGLVKPEALNK_
PJA1	Phosphorylation	S70	1.044	0.328	_SRS(ph)PFSTTR_
PJA1	Phosphorylation	S265		0.332	_NLAS(ph)PNCVKPK_
PPT1	Ubiquitylation	K174		-0.445	_TLNAGAYSK(gl)VVQER_
PPT1	Ubiquitylation	K224		1.077	_NLMALKK(gl)_
PPT1	Ubiquitylation	K253		0.222	_SGQAK(gl)ETIPLQETSLYTQDR_
PSMC1	Ubiquitylation	K23	-1.788		_K(gl)KYEPPVPTR_
PSMC1	Ubiquitylation	K24	-0.104	1.174	_K(gl)YEPPVPTR_
PSMC1	Ubiquitylation	K48	-1.854	-1.146	_GPDAASK(gl)LPLVTPHTQCR_
PSMC1	Ubiquitylation	K91	1.245		_NQEQMKPLEEK(gl)QEEER_
PSMC1	Ubiquitylation	K98	0.442	4.780	_SK(gl)VDDLR_
PSMC1	Ubiquitylation	K258		0.143	_VVGSELIQK(gl)YLGDGPK_
PSMC1	Ubiquitylation	K265		-1.189	_YLGDGPK(gl)LVR_
PSMC1	Ubiquitylation	K326	0.108	0.246	_GDVK(gl)VIMATNR_
PSMC1	Ubiquitylation	K359	-0.457	-0.853	_KIEFPLPDEK(gl)TK_
PSMC1	Ubiquitylation	K361	-1.277	-0.679	_IEFPLPDEKTK(gl)_
PSMC1	Ubiquitylation	K413	0.108	0.270	_MK(gl)VTNEDFKK_
PSMC1	Ubiquitylation	K420	-0.156	0.859	_MKVTNEDFK(gl)K_
PSMC1	Ubiquitylation	K421	0.068	0.648	_VTNEDFKK(gl)_
PSMC1	Ubiquitylation	K429	-0.735		_SKENVLYK(gl)K_
PSMC1	Ubiquitylation	K430	-0.618		_SKENVLYKK(gl)_
PSMC1	Phosphorylation	T434	-0.194	0.263	_KQEGT(ph)PEGLYL_
PSMC2	Ubiquitylation	K34	-0.054	0.133	_ALDEGDIALLK(gl)TYGQSTYSR_
PSMC2	Ubiquitylation	K57	0.210	0.513	_QVEDDIQQLLK(gl)K_
PSMC2	Ubiquitylation	K58	-0.922	0.072	_K(gl)INELTGIK_
PSMC2	Ubiquitylation	K100	-0.369	-0.790	_CTK(gl)IINADSEDPK_
PSMC2	Ubiquitylation	K116	0.388	0.726	_YIINVK(gl)QFAK_
PSMC2	Ubiquitylation	K186	0.125	0.175	_EQIEK(gl)LR_
PSMC2	Ubiquitylation	K222		-0.623	_GVLLFGPPGTGK(gl)TLCAR_
PSMC2	Ubiquitylation	K248	0.800	0.448	_VIGSELVQK(gl)YVGEGAR_
PSMC2	Ubiquitylation	K402	0.399	0.263	_K(gl)IATEKDFLEAVNK_
PSMC2	Ubiquitylation	K407	-0.357	0.298	_IATEK(gl)DFLEAVNK_
PSMC2	Ubiquitylation	K418	-0.387	0.079	_VIK(gl)SYAK_
PSMC2	Ubiquitylation	K422	-0.462	-0.406	_SYAK(gl)FSATPR_
PSMC3	Phosphorylation	S9	-0.089	0.162	_(ac)MNLLPNIES(ph)PVTR_
PSMC3	Ubiquitylation	K16	-0.007		_QEK(gl)MATVWDEAEQDGIGEEVLK_
PSMC3	Ubiquitylation	K53	1.141		_LLDSEIK(gl)IMK_
PSMC3	Ubiquitylation	K56	0.171	0.893	_IMK(gl)SEVLR_
PSMC3	Ubiquitylation	K70	0.813	0.938	_VTHELQAMK(gl)DK_
PSMC3	Ubiquitylation	K79	0.527		_IKENSEK(gl)IK_
PSMC3	Ubiquitylation	K81	0.303		_IKENSEKIK(gl)_
PSMC3	Ubiquitylation	K125	0.211	0.991	_CAVIK(gl)TSTR_
PSMC3	Ubiquitylation	K146	-0.149	0.433	_LK(gl)PGDLVGVNK_
PSMC3	Ubiquitylation	K245	0.156	0.587	_ACAAQTK(gl)ATFLK_
PSMC3	Ubiquitylation	K276	0.816	1.261	_DAFALAK(gl)EK_
PSMC3	Ubiquitylation	K278		0.568	_DAFALAKEK(gl)_
PSMC3	Ubiquitylation	K300	0.061	0.623	_RFDSEK(gl)AGDREVQR_
PSMC3	Ubiquitylation	K372	-0.011	-0.132	_K(gl)MNVSPDVNYEELAR_
PSMC3	Ubiquitylation	K431	1.026	0.632	_K(gl)KANLQYYA_
PSMC3	Ubiquitylation	K432	1.026	0.798	_K(gl)ANLQYYA_
PSMC4	Phosphorylation	T25	-1.198		_AQDEIPALSVSRPQT(ph)GLSFLGPEPEDLEDLYSR_
PSMC4	Phosphorylation	S28		-0.962	_AQDEIPALSVSRPQTGLS(ph)FLGPEPEDLEDLYSR_
PSMC4	Ubiquitylation	K80	0.193	-0.348	_EFLHAQEEVK(gl)R_
PSMC4	Ubiquitylation	K125	-0.394	-0.532	_ELLK(gl)PNASVALHK_
PSMC4	Ubiquitylation	K238	-0.433		_VVGSEFVQK(gl)YLGEGPR_
PSMC4	Ubiquitylation	K401		-0.658	_DFEK(gl)AYK_
PSMC4	Ubiquitylation	K418	0.356	0.606	_DEQEHEFYK(gl)_
PSMC5	Ubiquitylation	K7	0.167		_(ac)MELEEGK(gl)AGSGLR_
PSMC5	Ubiquitylation	K15	-0.747	0.003	_(ac)ALDGPEQMELEEGK(gl)AGSGLR_
PSMC5	Ubiquitylation	K55	-0.538	-0.039	_NELNAK(gl)VR_
PSMC5	Ubiquitylation	K88	-0.430	-0.397	_VLVK(gl)VHPEGK_
PSMC5	Ubiquitylation	K101	-1.062		_FVVDVDK(gl)NIDINDVTPNCR_
PSMC5	Ubiquitylation	K130	-0.243		_ILPNK(gl)VDPLVSLMMVEK_
PSMC5	Ubiquitylation	K330		2.949	_LDILK(gl)IHSR_
PSMC5	Ubiquitylation	K346	0.008		_K(gl)IAELMPGASGAEVK_
PSMC5	Ubiquitylation	K397	0.415	0.779	_DSEK(gl)NMSIK_
PSMC5	Ubiquitylation	K402	0.363		_DSEK(gl)NMSIKK_
PSMC6	Ubiquitylation	K7	0.253	0.732	_DK(gl)ALQDYR_
PSMC6	Ubiquitylation	K20	-0.044	0.744	_LLEHK(gl)EIDGR_
PSMC6	Ubiquitylation	K34	-0.419		_EQLK(gl)ELTK_
PSMC6	Ubiquitylation	K197	0.526		_AVASQLDCNFLK(gl)_
PSMC6	Ubiquitylation	K383	0.276	-0.218	_KLESK(gl)LDYKPV_
RBX1	Phosphorylation	T9		-0.553	_(ac)AAAMDVDT(ph)PSGTNSGAGK_
RBX1	Ubiquitylation	K19	-0.376	-0.371	_(ac)AAAMDVDTPSGTNSGAGK(gl)KR_
RBX1	Ubiquitylation	K20	-0.541	-0.371	_(ac)AAAMDVDTPSGTNSGAGKK(gl)R_
SIAH1	Ubiquitylation	K31		-1.541	_QTATALPTGTSK(gl)CPPSQR_
TRAF2	Phosphorylation	T7	-0.822	-1.190	_(ac)AAASVT(ph)PPGSLELLQPGFSK_
TRAF2	Ubiquitylation	K27	-0.253	2.194	_TLLGTK(gl)LEAK_
TRAF2	Ubiquitylation	K119		0.519	_GTLK(gl)EYESCHEGR_
TRAF2	Ubiquitylation	K176	-1.233	1.022	_APCCGADVK(gl)AHHEVCPK_
TRAF2	Ubiquitylation	K207	0.147	0.918	_FQDHVK(gl)TCGK_
TRAF2	Ubiquitylation	K481	-0.507	0.417	_MEAK(gl)NSYVR_
TRIM24	Ubiquitylation	K303	0.293		_IIEVNQNQK(gl)QVEQDIK_
TRIM24	Ubiquitylation	K341	1.339		_MK(gl)LMQQQQEVAGLSK_
TRIM24	Phosphorylation	S660		-0.300	_TVQS(ph)PNSSVPSPGLAGPVTMTSVHPPIR_
TRIM24	Phosphorylation	S768		2.572	_SILTSLLLNSS(ph)QSSTSEETVLR_
TRIM24	Phosphorylation	S771	3.067		_SILTSLLLNSSQSS(ph)TSEETVLR_
TRIM24	Phosphorylation	S808		0.469	_SEWLDPS(ph)QKSPLHVGETR_
TRIM24	Phosphorylation	S811	0.564	0.219	_SEWLDPSQKS(ph)PLHVGETR_
TRIM24	Phosphorylation	S1042	2.366	1.350	_LKS(ph)IEER_
UBR1	Phosphorylation	T21		-0.158	_MEISAELPQT(ph)PQR_
UBR1	Ubiquitylation	K596		0.045	_TVVQSCGHSLETK(gl)SYR_
UBR1	Ubiquitylation	K859	-2.925		_KQENK(gl)DEALPPPPPPEFCPAFSK_
UBR1	Ubiquitylation	K1681		-1.186	_VVLVEGK(gl)AR_
UBR1	Ubiquitylation	K1703	-1.402		_GCAYPAPYLDEYGETDPGLK(gl)R_
UBR2	Ubiquitylation	K779	-0.314	-0.531	_FSPGVGQVNATDEIK(gl)R_
UBR2	Phosphorylation	S1006	0.165	0.550	_ESS(ph)PTSPVAETEGTIMEESSR_
UBR2	Phosphorylation	S1009		0.446	_ESSPTS(ph)PVAETEGTIMEESSR_
UBR2	Ubiquitylation	K1138		-1.146	_STVLSK(gl)NR_
UBR2	Ubiquitylation	K1187	0.360	0.824	_YFDSVQAK(gl)EQRR_