RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
VPS13A	2	-2.100	4.280				0.799	-0.026
GNAO1	1	1.200	-1.320	0.217			-0.334	-0.374
SOD2	1	-0.340	0.140		2.161		-0.330
STRN	1	-0.950	1.240	2.466			0.374	0.242
MYO6	1	-1.580	2.560	0.037			0.700	0.607
MYO6	1	-1.580	2.560		-0.533
HTT	1	-0.200	-0.360	0.632			0.847	0.550
ALS2	0	-0.780	1.190
APBA2	0	0.670	-0.860
HEXB	0	-0.370	0.060				0.103
MCOLN3	0	-0.040	0.290
APLP2	0	-0.080	0.400
ZDHHC8	0	1.290	-0.730
NKX2-1	0	-0.730	0.480		0.174	0.236
NKX2-1	0	-0.730	0.480				-0.123
SOD1	0	1.450	-1.250
APP	0	0.100	-0.260					0.285
ANKH	0	-0.880	0.710
ATP2B2	0	1.540	-0.900				0.593	0.487
ATP7A	0	-0.210	0.370
HPRT1	0	-0.840	0.070				-0.388	0.526
HPRT1	0	-0.840	0.070	1.039
CHD7	0	0.220	-0.050	-1.168			0.026	0.297
ETV5	0	-0.820	1.770

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ALS2	Phosphorylation	S466	1.095	0.857	_KSSS(ph)LVDIREEETEGGSR_
ALS2	Phosphorylation	S492	0.013	0.308	_LSLPGLLSQVS(ph)PR_
ALS2	Phosphorylation	S1462	-0.133	-0.364	_S(ph)ESPEPGYVVTSSGLLLPVLLPR_
ALS2	Phosphorylation	S1464	-0.535	-0.600	_SES(ph)PEPGYVVTSSGLLLPVLLPR_
ANKH	Ubiquitylation	K80		-0.073	_NVGLVFVNSK(gl)R_
ANKH	Ubiquitylation	K305		-1.570	_AVYPAFDK(gl)NNPSNK_
APBA2	Phosphorylation	S481		0.365	_S(ph)ASQDCIETTPGAQEGK_
APBA2	Phosphorylation	S483	-0.028	0.164	_SAS(ph)QDCIETTPGAQEGK_
APBA2	Ubiquitylation	K498	0.305		_SASQDCIETTPGAQEGKK(gl)_
APLP2	Ubiquitylation	K744	-1.204		_HLNK(gl)M(ox)QNHGYENPTYK_
APP	Ubiquitylation	K751	-1.778	-1.280	_HLSK(gl)M(ox)QQNGYENPTYK_
ATP2B2	Ubiquitylation	K15	1.343		_(ac)GDMANNSVAYSGVK(gl)NSLK_
ATP2B2	Phosphorylation	S17	0.515	0.902	_NS(ph)LKEANHDGDFGITLAELR_
ATP2B2	Ubiquitylation	K19	1.343		_(ac)GDMANNSVAYSGVK(gl)NSLK_
ATP2B2	Ubiquitylation	K48	1.326		_K(gl)IQESYGDVYGICTK_
ATP2B2	Ubiquitylation	K62	0.733		_IQESYGDVYGICTK(gl)LK_
ATP2B2	Ubiquitylation	K64	0.642	0.801	_LK(gl)TSPNEGLSGNPADLER_
ATP2B2	Ubiquitylation	K193	-0.102	0.773	_IEQEQK(gl)FTVIR_
ATP2B2	Ubiquitylation	K365		0.997	_SVLQGK(gl)LTK_
ATP2B2	Ubiquitylation	K747	1.309		_NEK(gl)GEIEQER_
ATP2B2	Ubiquitylation	K773		-0.186	_SSPTDK(gl)HTLVK_
ATP2B2	Ubiquitylation	K807	0.010	1.083	_QVVAVTGDGTNDGPALKK(gl)_
ATP2B2	Ubiquitylation	K921	-0.811	0.202	_NK(gl)PLISR_
ATP2B2	Phosphorylation	S1177	0.214	0.537	_S(ph)SIHNFM(ox)THPEFR_
ATP2B2	Phosphorylation	S1178	0.214	0.537	_S(ph)SIHNFM(ox)THPEFR_
ATP2B2	Phosphorylation	S1193	-0.342	-0.629	_IEDS(ph)EPHIPLIDDTDAEDDAPTKR_
ATP7A	Ubiquitylation	K333	0.029		_K(gl)AIEAVSPGLYR_
CHD7	Phosphorylation	S557		-0.452	_VPVHQHS(ph)PSEPFLEKPVPDM(ox)TQVSGPNAQLVK_
CHD7	Phosphorylation	S1874	-0.088	-0.155	_TPFKDEIDEFANS(ph)PSEDKEESMEIHATGK_
CHD7	Phosphorylation	S2533		-0.792	_RTS(ph)LSAEDAEVTK_
CHD7	Phosphorylation	S2559	-0.345	-0.513	_NIPS(ph)PGQLDPDTR_
CHD7	Phosphorylation	S2956	0.383	-0.248	_DGETLEGS(ph)DAEESLDK_
ETV5	Phosphorylation	S136		-0.502	_RELHS(ph)PSSELSSCSHEQALGANYGEK_
GNAO1	Ubiquitylation	K29	0.529	-0.094	_NLREDGEK(gl)AAK_
GNAO1	Ubiquitylation	K92	1.569		_LK(gl)IDFGEAAR_
GNAO1	Ubiquitylation	K349	-0.221	-0.339	_NNLK(gl)ECGLY_
HPRT1	Phosphorylation	S5	-0.474		_S(ph)PGVVISDDEPGYDLDLFCIPNHYAEDLER_
HPRT1	Ubiquitylation	K103	0.354	-0.199	_LK(gl)SYCNDQSTGDIK_
HPRT1	Ubiquitylation	K159	0.923	0.525	_MVK(gl)VASLLVK_
HPRT1	Ubiquitylation	K166	-0.029	-0.428	_VASLLVK(gl)R_
HPRT1	Ubiquitylation	K175	-1.570		_SVGYK(gl)PDFVGFEIPDK_
HPRT1	Ubiquitylation	K215	0.354	-0.516	_DLNHVCVISETGKAK(gl)_
HTT	Ubiquitylation	K260		-0.128	_AFIANLK(gl)_
HTT	Phosphorylation	S419	0.595	0.531	_SGS(ph)IVELIAGGGSSCS(ph)PVLSR_
HTT	Phosphorylation	S430	0.402	0.494	_SGSIVELIAGGGSS(ph)CSPVLSR_
HTT	Phosphorylation	S432	0.317	0.640	_SGSIVELIAGGGSSCS(ph)PVLSR_
HTT	Phosphorylation	S1195	-0.222	0.264	_EKEPGEQAS(ph)VPLSPK_
HTT	Phosphorylation	S1199	-0.456	-0.970	_GKEKEPGEQASVPLS(ph)PK_
HTT	Ubiquitylation	K1402	0.169	-0.538	_VSTQLK(gl)TNLTSVTK_
HTT	Phosphorylation	S1874	1.994	1.028	_LLSPQMS(ph)GEEEDSDLAAK_
MCOLN3	Ubiquitylation	K529	0.845	0.686	_TFISECK(gl)DLPNSGK_
MCOLN3	Ubiquitylation	K536	0.911	0.553	_DLPNSGK(gl)YR_
MYO6	Phosphorylation	S266		0.008	_LHLS(ph)SPDNFR_
MYO6	Phosphorylation	S267	-0.106	0.501	_LHLSS(ph)PDNFR_
MYO6	Ubiquitylation	K285	0.079		_YFANK(gl)ETDKQILQNR_
MYO6	Ubiquitylation	K408	0.078		_GTVIK(gl)VPLKVEQANNAR_
MYO6	Ubiquitylation	K634	0.366		_ELFESSTNNNKDTKQK(gl)_
MYO6	Ubiquitylation	K993	-0.079	1.133	_QK(gl)EEESQQQAVLEQERR_
MYO6	Ubiquitylation	K1053		-1.790	_NDGTRPK(gl)MTPEQMAK_
MYO6	Ubiquitylation	K1077	-0.135	0.805	_GPAVLATK(gl)AAAGTK_
MYO6	Ubiquitylation	K1089	0.440	1.326	_YDLSK(gl)WK_
MYO6	Ubiquitylation	K1120	0.732	0.435	_LK(gl)VYHAWK_
MYO6	Ubiquitylation	K1126	0.296		_VYHAWK(gl)SK_
MYO6	Ubiquitylation	K1142	-1.182	-0.570	_NTETEQRAPK(gl)SVTDYAQQNPAAQIPAR_
MYO6	Ubiquitylation	K1184	-1.200	-0.624	_IPFIRPADQYK(gl)DPQSK_
SOD1	Ubiquitylation	K4	-0.329		_(ac)ATK(gl)AVCVLK_
SOD1	Ubiquitylation	K10	0.211	0.582	_AVCVLK(gl)GDGPVQGIINFEQK_
SOD1	Ubiquitylation	K24	-0.435	-0.086	_GDGPVQGIINFEQK(gl)ESNGPVK_
SOD1	Ubiquitylation	K31	-0.109	0.332	_ESNGPVK(gl)VWGSIK_
SOD1	Phosphorylation	S99		0.405	_HVGDLGNVTADKDGVADVS(ph)IEDSVISLSGDHCIIGR_
SOD1	Ubiquitylation	K123	0.352	0.004	_TLVVHEK(gl)ADDLGK_
SOD1	Ubiquitylation	K129	0.143		_ADDLGK(gl)GGNEESTK_
SOD1	Ubiquitylation	K137	0.464	0.934	_ADDLGKGGNEESTK(gl)TGNAGSR_
STRN	Phosphorylation	S369	-0.881		_DVDELPS(ph)LQPSVGSPSRPSSSR_
STRN	Phosphorylation	S376	-2.092	-2.120	_DVDELPSLQPSVGS(ph)PSRPSSSR_
VPS13A	Ubiquitylation	K1748		-1.291	_TVPMLLAK(gl)SR_
VPS13A	Ubiquitylation	K1825	-0.339		_MAIVESDPEEENYK(gl)VPEYK_
VPS13A	Ubiquitylation	K2228	1.347	1.510	_MLQYK(gl)ADGIHR_
VPS13A	Ubiquitylation	K2930	0.903		_ITGAMAK(gl)GVAAMTMDEDYQQK_
VPS13A	Ubiquitylation	K2944	1.033	0.232	_GVAAMTMDEDYQQK(gl)R_
VPS13A	Ubiquitylation	K2951	0.490		_EAMNK(gl)QPAGFR_
VPS13A	Ubiquitylation	K2988	0.895		_GAQK(gl)GGAAGFFK_
VPS13A	Ubiquitylation	K3152	0.349		_IINFK(gl)TPEDAR_
ZDHHC8	Ubiquitylation	K224	-0.661	0.509	_TTNEQVTGK(gl)FR_