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Query: VPS13A

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
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[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
VPS13A 2 7.910 -2.100 4.280 0.799 -0.026

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
VPS13A Ubiquitylation K2228 1.347 1.510 _MLQYK(gl)ADGIHR_
VPS13A Ubiquitylation K2944 1.033 0.232 _GVAAMTMDEDYQQK(gl)R_
VPS13A Ubiquitylation K1748 -1.291 _TVPMLLAK(gl)SR_
VPS13A Ubiquitylation K1825 -0.339 _MAIVESDPEEENYK(gl)VPEYK_
VPS13A Ubiquitylation K2930 0.903 _ITGAMAK(gl)GVAAMTMDEDYQQK_
VPS13A Ubiquitylation K2951 0.490 _EAMNK(gl)QPAGFR_
VPS13A Ubiquitylation K2988 0.895 _GAQK(gl)GGAAGFFK_
VPS13A Ubiquitylation K3152 0.349 _IINFK(gl)TPEDAR_

Background Information for VPS13A:


Pubmed-VPS13A »
Uniprot-VPS13A »
Biogrid-VPS13A »
ProteomicsDB-VPS13A »

Tumorportal-VPS13A »
COSMIC-VPS13A »
GenomeRNAi-VPS13A »
Genecards-VPS13A


Protein-protein Interactions for VPS13A
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait DNAJC7 Cat. description Hein, Mann, Cell 2015
Category members IP bait ARPC5 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait CRTAC1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait DNAJC7 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait FAF2 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait PPIAL4G Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait RNF19B Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait UBXN4 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait VAPA Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait VAPB Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait XKRX Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in VPS13A
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members VPSAP_dom IPR009543 0.17
Category members Autophagy-rel_C IPR015412 0


Protein complexes (CORUM database) featuring VPS13A
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring VPS13A
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005515 protein binding Database INF
Category members GO Category GO:0015031 protein transport Database 3.48
Category members GO Category GO:0008104 protein localization Database 0.5
Category members GO Category GO:0005622 intracellular Database 0.32
Category members GO Category GO:0006895 Golgi to endosome transport Database 0.25
Category members GO Category GO:0008219 cell death Database 0.08
Category members GO Category GO:0007399 nervous system development Database 0
Category members GO Category GO:0007626 locomotory behavior Database 0
Category members GO Category GO:0031045 dense core granule Database 0
Category members GO Category GO:0035176 social behavior Database 0


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