RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
MORC3	2	-0.280	-0.100	0.309			0.499	0.162
PML	1	-0.420	0.350		-0.244	0.322
PDCD4	1	-0.500	1.310	0.149
PDCD4	1	-0.500	1.310
ILK	1	-1.560	3.680				-0.463	-0.527
NPM1	1	1.010	-0.750	0.063	-0.066	-0.259
HTT	1	-0.200	-0.360	0.632			0.847	0.550
SIRT1	0	0.910	-0.910
DNAJA3	0	-0.010	-0.240	0.786	0.226	-0.161	-0.800	-0.347
ZMIZ1	0	1.370	-0.740
TBX3	0	-0.160	0.160
TP53	0	-1.070	1.050	-2.808	0.076	-0.094	0.436	0.497
SOD1	0	1.450	-1.250
WRN	0	-0.320	-0.170					0.180
LIMS1	0	-0.640	0.490	-0.812
LIMS3L	0			-0.812
CDK1	0	-0.370	0.080	-0.202	-0.884	-0.107	-0.097	-0.501
BCL2	0	0.910	-0.740
HRAS	0	1.470	-0.520
NUP62	0						1.019	0.665
MIF	0	1.480	-0.910		-0.887	-0.872	-1.709	0.653

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
BCL2	Ubiquitylation	K22	1.480		_YIHYK(gl)LSQR_
CDK1	Ubiquitylation	K6	0.011	-0.784	_(ac)M(ox)EDYTK(gl)IEK_
CDK1	Ubiquitylation	K20	-0.327	-0.270	_IGEGTYGVVYK(gl)GR_
CDK1	Ubiquitylation	K33	0.736	0.239	_TTGQVVAMK(gl)K_
CDK1	Ubiquitylation	K34		-0.306	_TTGQVVAMKK(gl)_
CDK1	Ubiquitylation	K58	0.312	-0.262	_EISLLK(gl)ELR_
CDK1	Ubiquitylation	K136		-0.468	_DLK(gl)PQNLLIDDK(gl)GTIK_
CDK1	Ubiquitylation	K145	0.161	-0.954	_DLKPQNLLIDDK(gl)GTIK_
CDK1	Ubiquitylation	K149		-0.038	_GTIK(gl)LADFGLAR_
CDK1	Ubiquitylation	K251	-0.047	-1.236	_WK(gl)PGSLASHVK_
CDK1	Ubiquitylation	K280	0.179	-1.210	_MLIYDPAK(gl)R_
HRAS	Ubiquitylation	K170	-1.005		_K(gl)LNPPDESGPGCMSCK_
HTT	Ubiquitylation	K260		-0.128	_AFIANLK(gl)_
HTT	Phosphorylation	S419	0.595	0.531	_SGS(ph)IVELIAGGGSSCS(ph)PVLSR_
HTT	Phosphorylation	S430	0.402	0.494	_SGSIVELIAGGGSS(ph)CSPVLSR_
HTT	Phosphorylation	S432	0.317	0.640	_SGSIVELIAGGGSSCS(ph)PVLSR_
HTT	Phosphorylation	S1195	-0.222	0.264	_EKEPGEQAS(ph)VPLSPK_
HTT	Phosphorylation	S1199	-0.456	-0.970	_GKEKEPGEQASVPLS(ph)PK_
HTT	Ubiquitylation	K1402	0.169	-0.538	_VSTQLK(gl)TNLTSVTK_
HTT	Phosphorylation	S1874	1.994	1.028	_LLSPQMS(ph)GEEEDSDLAAK_
ILK	Ubiquitylation	K85		-0.777	_DIVQK(gl)LLQYK_
ILK	Ubiquitylation	K426		-0.300	_LMK(gl)ICMNEDPAK_
ILK	Ubiquitylation	K435		-2.732	_ICMNEDPAK(gl)RPK_
MIF	Ubiquitylation	K78	0.018	0.329	_SYSK(gl)LLCGLLAER_
MORC3	Phosphorylation	S514		0.420	_HLS(ph)EGTNSYATR_
MORC3	Ubiquitylation	K555	-1.251		_SSILNAK(gl)NRR_
MORC3	Phosphorylation	S560	2.304	1.301	_RLS(ph)SQFENSVYK_
MORC3	Ubiquitylation	K785	0.929		_K(gl)QCSALQHVK_
MORC3	Ubiquitylation	K825	0.523	0.398	_QLDK(gl)CSIERDQYK_
MORC3	Ubiquitylation	K844	0.024		_SEVELLEMEK(gl)SQIR_
MORC3	Ubiquitylation	K855		1.663	_SQCEELK(gl)TEVEQLK_
MORC3	Ubiquitylation	K891	0.406		_STNQQTATDVSTSSNIEESVNHMDGESLK(gl)LR_
NPM1	Phosphorylation	S4	-0.102	0.205	_(ac)MEDS(ph)MDMDMSPLRPQNYLFGCELK_
NPM1	Phosphorylation	S10	0.493	0.606	_(ac)MEDSMDM(ox)DM(ox)S(ph)PLRPQNYLFGCELK_
NPM1	Phosphorylation	Y67	0.604	0.383	_TVSLGAGAKDELHIVEAEAMNY(ph)EGSPIKVTLATLK_
NPM1	Phosphorylation	S70	0.285	0.333	_TVSLGAGAKDELHIVEAEAMNYEGS(ph)PIK_
NPM1	Phosphorylation	T75	0.611	0.229	_DELHIVEAEAMNYEGSPIKVT(ph)LATLK_
NPM1	Phosphorylation	T78		0.397	_TVSLGAGAKDELHIVEAEAMNYEGSPIKVTLAT(ph)LK_
NPM1	Phosphorylation	S125	0.202	0.017	_CGSGPVHISGQHLVAVEEDAES(ph)EDEEEEDVK_
NPM1	Phosphorylation	S139		-0.611	_LLSIS(ph)GKR_
NPM1	Ubiquitylation	K141	0.568	1.699	_LLSISGK(gl)R_
NPM1	Ubiquitylation	K150	-1.308	0.669	_SAPGGGSK(gl)VPQKK_
NPM1	Ubiquitylation	K202	0.335	0.204	_SIRDTPAK(gl)NAQK_
NPM1	Phosphorylation	S227		0.788	_SKGQES(ph)FKK_
NPM1	Phosphorylation	S243	-0.070	0.063	_GPSS(ph)VEDIK_
NPM1	Ubiquitylation	K248	0.294	1.847	_GPSSVEDIK(gl)AK_
NPM1	Ubiquitylation	K250	0.931	1.267	_AK(gl)MQASIEK_
NPM1	Phosphorylation	S254	-0.677	0.371	_MQAS(ph)IEK_
NPM1	Ubiquitylation	K257	0.236	0.753	_MQASIEK(gl)GGSLPK_
NPM1	Phosphorylation	S260	-0.202	0.203	_GGS(ph)LPKVEAK_
NPM1	Ubiquitylation	K267	0.954	1.794	_VEAK(gl)FINYVK_
NUP62	Phosphorylation	S408	1.068	1.163	_ELEDLLS(ph)PLEELVK_
NUP62	Ubiquitylation	K445	-0.151	-0.030	_LAENIDAQLK(gl)R_
NUP62	Ubiquitylation	K504	0.340	-0.091	_K(gl)VEEVTK(gl)VCEGR_
PDCD4	Phosphorylation	S76	1.091	0.816	_GDS(ph)VSDSGSDALR_
PDCD4	Phosphorylation	T93	-0.214	0.036	_SGLTVPT(ph)SPK_
PDCD4	Phosphorylation	S94	-0.407	-0.022	_SGLTVPTS(ph)PK_
PDCD4	Ubiquitylation	K242		1.242	_SFDK(gl)LLK_
PDCD4	Ubiquitylation	K245	-0.529		_LLK(gl)DLPELALDTPR_
PDCD4	Ubiquitylation	K309	1.505		_ATVLLSMSKGGK(gl)_
PDCD4	Phosphorylation	S457	0.751	0.699	_RFVS(ph)EGDGGR_
PML	Ubiquitylation	K394	0.515	0.360	_LQDLSSCITQGK(gl)DAAVSKK_
PML	Phosphorylation	S403		3.141	_KAS(ph)PEAASTPRDPIDVDLPEEAER_
PML	Ubiquitylation	K476	-0.403	-0.735	_GPSYGEDVSNTTTAQK(gl)R_
PML	Phosphorylation	S504	-0.198	-0.109	_S(ph)SPEQPRPSTSK_
PML	Phosphorylation	S505	-0.198	-0.109	_S(ph)SPEQPRPSTSK_
PML	Phosphorylation	S518	-1.632	-1.605	_AVS(ph)PPHLDGPPS(ph)PR_
PML	Phosphorylation	S527	-1.392	-1.605	_AVS(ph)PPHLDGPPS(ph)PR_
PML	Phosphorylation	S530	0.466	0.093	_S(ph)PVIGSEVFLPNSNHVASGAGEAEER_
PML	Ubiquitylation	K623		-0.784	_IDNETQK(gl)ISQLAAVNR_
SIRT1	Phosphorylation	S14	-0.369	-0.246	_(ac)ADEAALALQPGGS(ph)PSAAGADR_
SIRT1	Phosphorylation	S16	-0.306	-1.665	_(ac)ADEAALALQPGGS(ph)PS(ph)AAGADREAASSPAGEPLR_
SIRT1	Phosphorylation	S26	-1.047	-0.245	_EAAS(ph)SPAGEPLR_
SIRT1	Phosphorylation	S27	0.351	-0.363	_EAASS(ph)PAGEPLR_
SIRT1	Phosphorylation	S47	-0.574	-0.607	_S(ph)PGEPGGAAPER_
SIRT1	Ubiquitylation	K238	-1.641		_RK(gl)DINTIEDAVK_
SIRT1	Ubiquitylation	K499	-2.138	-0.204	_LGGEYAK(gl)LCCNPVK_
SIRT1	Ubiquitylation	K578	-2.782		_GCMEEK(gl)PQEVQTSR_
SIRT1	Ubiquitylation	K601	-3.051		_NVESIAEQMENPDLK(gl)NVGSSTGEK_
SOD1	Ubiquitylation	K4	-0.329		_(ac)ATK(gl)AVCVLK_
SOD1	Ubiquitylation	K10	0.211	0.582	_AVCVLK(gl)GDGPVQGIINFEQK_
SOD1	Ubiquitylation	K24	-0.435	-0.086	_GDGPVQGIINFEQK(gl)ESNGPVK_
SOD1	Ubiquitylation	K31	-0.109	0.332	_ESNGPVK(gl)VWGSIK_
SOD1	Phosphorylation	S99		0.405	_HVGDLGNVTADKDGVADVS(ph)IEDSVISLSGDHCIIGR_
SOD1	Ubiquitylation	K123	0.352	0.004	_TLVVHEK(gl)ADDLGK_
SOD1	Ubiquitylation	K129	0.143		_ADDLGK(gl)GGNEESTK_
SOD1	Ubiquitylation	K137	0.464	0.934	_ADDLGKGGNEESTK(gl)TGNAGSR_
TBX3	Ubiquitylation	K466	-2.519		_EGTAPAK(gl)VEEAR_
TP53	Ubiquitylation	K120	-0.188		_LGFLHSGTAK(gl)SVTCTYSPALNK_
TP53	Ubiquitylation	K164	0.157	-1.260	_AMAIYK(gl)QSQHMTEVVR_
TP53	Phosphorylation	S314	-0.695	-1.000	_ALPNNTSS(ph)SPQPK_
TP53	Phosphorylation	S315	-0.762	-0.959	_RALPNNTSSS(ph)PQPK_
TP53	Ubiquitylation	K320	-0.978		_ALPNNTSSSPQPKK(gl)_
TP53	Ubiquitylation	K357	-0.231	-0.823	_ELNEALELKDAQAGK(gl)EPGGSR_
WRN	Ubiquitylation	K134		0.717	_MLLENKAVK(gl)_
WRN	Phosphorylation	S1133	0.363	0.023	_SIMVQS(ph)PEK_
ZMIZ1	Ubiquitylation	K559	-0.155		_SVLQGLLKK(gl)_