bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »

bioLOGIC Data

bioLOGIC Data


Exact search


Query: LIMS1

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
W
[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
LIMS1 0 -0.322 -0.640 0.490 -0.812

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence

Background Information for LIMS1:


Pubmed-LIMS1 »
Uniprot-LIMS1 »
Biogrid-LIMS1 »
ProteomicsDB-LIMS1 »

Tumorportal-LIMS1 »
COSMIC-LIMS1 »
GenomeRNAi-LIMS1 »
Genecards-LIMS1


Protein-protein Interactions for LIMS1
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait ASPM Cat. description Hein, Mann, Cell 2015
Category members IP bait CCT4 Cat. description Hein, Mann, Cell 2015
Category members IP bait ILK Cat. description Hein, Mann, Cell 2015
Category members IP bait KIF22 Cat. description Hein, Mann, Cell 2015
Category members IP bait MYH10 Cat. description Hein, Mann, Cell 2015
Category members IP bait SGOL1 Cat. description Hein, Mann, Cell 2015
Category members IP bait SIDT2 Cat. description Hein, Mann, Cell 2015
Category members IP bait TMEM132A Cat. description Hein, Mann, Cell 2015
Category members IP bait XRCC5 Cat. description Hein, Mann, Cell 2015
Category members IP bait LIMS1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait PARVG Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait RSU1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in LIMS1
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members Znf_LIM IPR001781 0


Protein complexes (CORUM database) featuring LIMS1
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring LIMS1
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005515 protein binding Database INF
Category members GO Category GO:0005829 cytosol Database INF
Category members Pathway Pathway_924 PID_ILK_PATHWAY 0 1.75
Category members GO Category GO:0005886 plasma membrane Database 1.21
Category members GO Category GO:0045892 negative regulation of transcription, DNA-dependent Database 1.15
Category members GO Category GO:0005925 focal adhesion Database 0.68
Category members GO Category GO:0048471 perinuclear region of cytoplasm Database 0.39
Category members GO Category GO:0008270 zinc ion binding Database 0.29
Category members GO Category GO:0034329 cell junction assembly Database 0.29
Category members Pathway Pathway_560 REACTOME_CELL_CELL_COMMUNICATION 0 0.25
Category members Pathway Pathway_923 REACTOME_CELL_EXTRACELLULAR_MATRIX_INTERACTIONS 0 0.18
Category members GO Category GO:0007569 cell aging Database 0.03
Category members Pathway Pathway_925 REACTOME_CELL_JUNCTION_ORGANIZATION 0 0


.

© Copyright Svejstrup Laboratory 2015