RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
MYBL2	2	-1.160	2.880
PCNA	2	-0.730	0.380	0.679	1.154	0.572	0.718	0.782
RBL1	1	0.270	-0.950
HDAC1	1	-1.980	4.450
HDAC1	1	-1.980	4.450	-0.122	0.307	0.969	0.094	0.191
RBBP4	1	2.110	-1.240	0.533	-0.610	0.648
CDC6	0	-1.190	2.070
RBL2	0	0.890	-0.800
CCNE1	0	0.460	-0.980
CDK2	0	-0.040	-0.300				-0.578	-0.797
CDK2	0	-0.040	-0.300	-0.202	-0.884	-0.107	-0.097	-0.501
CCNA2	0	-0.530	0.260
DYRK1A	0	-1.360	2.390
CDC25A	0	0.260	-0.100
CDK1	0	-0.370	0.080	-0.202	-0.884	-0.107	-0.097	-0.501
LIN9	0	-0.450	0.540	-1.325
LIN54	0	-1.290	1.530
TFDP1	0	-0.430	0.060		-1.111	0.446	-1.279	-0.496
E2F4	0	0.930	-0.810
LIN52	0	0.440	-0.120

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
CCNA2	Ubiquitylation	K54		-0.746	_AALAVLK(gl)SGNPR_
CCNA2	Ubiquitylation	K68		-1.274	_GLAQQQRPK(gl)TR_
CCNE1	Phosphorylation	S100		-0.765	_IIAPS(ph)RGSPLPVLSWANR_
CCNE1	Phosphorylation	S103		-0.765	_IIAPS(ph)RGSPLPVLSWANR_
CCNE1	Phosphorylation	S387	0.705	-0.922	_AS(ph)PLPSGLLTPPQSGK_
CDC25A	Ubiquitylation	K120		1.111	_LLGCSPALK(gl)R_
CDC6	Ubiquitylation	K33		1.448	_NSSDAK(gl)LEPTNVQTVTCSPR_
CDC6	Phosphorylation	S45		-0.996	_LEPTNVQTVTCS(ph)PR_
CDC6	Phosphorylation	S54		-0.860	_ALPLS(ph)PR_
CDC6	Phosphorylation	S106		-0.049	_LVFDNQLTIKS(ph)PSK_
CDC6	Ubiquitylation	K221		1.075	_ILQDLKK(gl)_
CDK1	Ubiquitylation	K6	0.011	-0.784	_(ac)M(ox)EDYTK(gl)IEK_
CDK1	Ubiquitylation	K20	-0.327	-0.270	_IGEGTYGVVYK(gl)GR_
CDK1	Ubiquitylation	K33	0.736	0.239	_TTGQVVAMK(gl)K_
CDK1	Ubiquitylation	K34		-0.306	_TTGQVVAMKK(gl)_
CDK1	Ubiquitylation	K58	0.312	-0.262	_EISLLK(gl)ELR_
CDK1	Ubiquitylation	K136		-0.468	_DLK(gl)PQNLLIDDK(gl)GTIK_
CDK1	Ubiquitylation	K145	0.161	-0.954	_DLKPQNLLIDDK(gl)GTIK_
CDK1	Ubiquitylation	K149		-0.038	_GTIK(gl)LADFGLAR_
CDK1	Ubiquitylation	K251	-0.047	-1.236	_WK(gl)PGSLASHVK_
CDK1	Ubiquitylation	K280	0.179	-1.210	_MLIYDPAK(gl)R_
CDK2	Ubiquitylation	K6	-0.130	-0.399	_(ac)MENFQK(gl)VEK_
CDK2	Ubiquitylation	K6	0.011	-0.784	_(ac)M(ox)EDYTK(gl)IEK_
CDK2	Phosphorylation	T14	0.429		_IGEGT(ph)YGVVYK_
CDK2	Phosphorylation	Y15	0.697	0.743	_IGEGTY(ph)GVVYK_
CDK2	Ubiquitylation	K20		0.272	_IGEGTYGVVYK(gl)AR_
CDK2	Ubiquitylation	K20	-0.327	-0.270	_IGEGTYGVVYK(gl)GR_
CDK2	Ubiquitylation	K24	0.366		_NK(gl)LTGEVVALKK_
CDK2	Ubiquitylation	K33		0.033	_NKLTGEVVALK(gl)K_
CDK2	Ubiquitylation	K33	0.736	0.239	_TTGQVVAMK(gl)K_
CDK2	Ubiquitylation	K34		0.542	_LTGEVVALKK(gl)_
CDK2	Ubiquitylation	K34		-0.306	_TTGQVVAMKK(gl)_
CDK2	Ubiquitylation	K58	0.312	-0.262	_EISLLK(gl)ELR_
CDK2	Ubiquitylation	K136		-0.468	_DLK(gl)PQNLLIDDK(gl)GTIK_
CDK2	Ubiquitylation	K145	0.161	-0.954	_DLKPQNLLIDDK(gl)GTIK_
CDK2	Ubiquitylation	K149		-0.038	_GTIK(gl)LADFGLAR_
CDK2	Ubiquitylation	K251	-0.047	-1.236	_WK(gl)PGSLASHVK_
CDK2	Ubiquitylation	K280	0.179	-1.210	_MLIYDPAK(gl)R_
CDK2	Ubiquitylation	K298	-1.907	-2.380	_QDFSK(gl)VVPPLDEDGR_
DYRK1A	Ubiquitylation	K11	-0.236		_(ac)MHTGGETSACK(gl)PSSVR_
DYRK1A	Phosphorylation	Y321	0.876	0.924	_IYQY(ph)IQSR_
E2F4	Phosphorylation	T14		-2.100	_(ac)AEAGPQAPPPPGT(ph)PSR_
E2F4	Phosphorylation	S16	-2.158	-1.655	_(ac)AEAGPQAPPPPGTPS(ph)R_
HDAC1	Ubiquitylation	K50	0.036		_K(gl)MEIYRPHK_
HDAC1	Ubiquitylation	K66		-0.593	_ANAEEMTK(gl)YHSDDYIK_
HDAC1	Ubiquitylation	K74	0.620	-1.473	_YHSDDYIK(gl)FLR_
HDAC1	Ubiquitylation	K89	0.749	-0.241	_SIRPDNMSEYSK(gl)QMQR_
HDAC1	Phosphorylation	S393	-1.133	-1.144	_M(ox)LPHAPGVQM(ox)QAIPEDAIPEES(ph)GDEDEDDPDKR_
HDAC1	Phosphorylation	S409	1.326	1.144	_ISICS(ph)SDKR_
HDAC1	Phosphorylation	S410	1.326	1.144	_ISICS(ph)SDKR_
HDAC1	Ubiquitylation	K412	0.642	-0.744	_ISICSSDK(gl)R_
LIN52	Phosphorylation	S28	-0.551	-0.759	_LDRAS(ph)PDLWPEQLPGVAEFAASFK_
LIN52	Phosphorylation	S52		-0.282	_SPITS(ph)SPPKWMAEIERDDIDMLK_
LIN52	Phosphorylation	S53	-0.687	-0.303	_SPITSS(ph)PPK_
LIN54	Phosphorylation	S182	-0.976	-0.217	_IAIS(ph)PLKS(ph)PNK_
LIN54	Phosphorylation	S186	0.379	0.446	_IAIS(ph)PLKS(ph)PNK_
LIN9	Phosphorylation	S459	0.135	-0.181	_LHYTPPLQS(ph)PIIDNDPLLGQSPWR_
LIN9	Ubiquitylation	K522	-0.825	-0.692	_EMNTEAEK(gl)LK_
MYBL2	Phosphorylation	S241	1.046	0.481	_EEENS(ph)EEELAAATTSK_
MYBL2	Phosphorylation	T266	-0.189	-0.901	_EQEPIGTDLDAVRT(ph)PEPLEEFPK_
MYBL2	Phosphorylation	S393	0.881	0.234	_GELIPIS(ph)PSTEVGGSGIGTPPSVLK_
MYBL2	Phosphorylation	S421		3.255	_VALS(ph)PVTENSTSLSFLDSCNSLTPK_
MYBL2	Phosphorylation	S452	-0.134	-1.114	_TLPFS(ph)PSQFLNFWNK_
PCNA	Ubiquitylation	K13	0.209	2.207	_LVQGSILK(gl)K_
PCNA	Ubiquitylation	K14	0.233	2.833	_LVQGSILKK(gl)_
PCNA	Ubiquitylation	K80	0.570	1.579	_ILK(gl)CAGNEDIITLR_
PCNA	Ubiquitylation	K164	2.309	2.671	_DLSHIGDAVVISCAK(gl)DGVK_
PCNA	Ubiquitylation	K168	2.484	2.645	_DLSHIGDAVVISCAKDGVK(gl)_
PCNA	Ubiquitylation	K248	0.226	0.515	_IADMGHLK(gl)YYLAPK_
RBBP4	Ubiquitylation	K4	0.699	0.574	_(ac)ADK(gl)EAAFDDAVEER_
RBBP4	Ubiquitylation	K160	-1.765		_HPSK(gl)PDPSGECNPDLR_
RBL1	Phosphorylation	S640	-0.916	-1.810	_DMQPLS(ph)PISVHER_
RBL1	Phosphorylation	S749	0.935	1.566	_VKS(ph)PVSLTAHSLIGASPK_
RBL1	Ubiquitylation	K885		-0.844	_SVLLK(gl)SIPR_
RBL2	Phosphorylation	S639		0.520	_ADEICIAGS(ph)PLTPR_
RBL2	Phosphorylation	S662	0.551	0.137	_SITS(ph)PTTLYDR_
RBL2	Phosphorylation	S981		-1.828	_SSSTLPVPQPS(ph)SAPPT(ph)PTR_
RBL2	Phosphorylation	S982		-2.152	_SSSTLPVPQPSS(ph)APPT(ph)PTR_
RBL2	Phosphorylation	T986	-1.219	-1.828	_SSSTLPVPQPSS(ph)APPT(ph)PTR_
RBL2	Phosphorylation	S1078	0.241	0.286	_IFYYFS(ph)NSPSK_
RBL2	Phosphorylation	S1080	-0.327	-0.297	_IFYYFSNS(ph)PSK_
RBL2	Phosphorylation	S1112	-0.598	-0.843	_RGILLEDGSES(ph)PAKR_
TFDP1	Phosphorylation	S23	-0.667	-0.353	_VFIDQNLS(ph)PGK_
TFDP1	Ubiquitylation	K320	-0.549	0.052	_MGMACGLESGSCSAEDLK(gl)MAR_