RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
W

Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
ARF5	1	0.360	-0.510	1.771
ARF5	1	0.360	-0.510		0.702	-1.163
ARF5	1	0.360	-0.510	-0.334			0.348	-0.014
RHOT1	1	-1.960	3.470				0.712	0.810
ARL8A	1	-1.930	3.380
RAB6B	1	-1.790	3.450				0.752	0.721
RAB6B	1	-1.790	3.450		1.078	-1.682
RAB6B	1	-1.790	3.450				-0.345	0.336
ARF1	0	0.020	0.040	-0.334			0.348	-0.014
ARF3	0	-0.710	0.680	-0.334			0.348	-0.014
ARF4	0	0.190	-0.710	-0.334			0.348	-0.014
RRAGD	0	-0.870	0.980
RRAGD	0	-0.870	0.980
SAR1A	0	0.350	-0.660	-0.088			0.687	0.548
SAR1A	0	0.350	-0.660
MTIF2	0	0.630	-0.750	-0.350	0.783	-0.267	0.657	0.874
ARFRP1	0	0.410	-0.350
TRIM23	0	-0.430	-0.320
RRAGC	0	-0.530	0.100
RRAGC	0	-0.530	0.100
ARL1	0	0.440	-0.340				0.333	0.219
ARL1	0	0.440	-0.340
ARL1	0	0.440	-0.340	-0.005
IFT22	0	0.350	0.000
ARL8B	0	0.400	-0.100	0.105			0.781	-0.457
ARF3	0	-0.710	0.680		0.702	-1.163
RAB33A	0	-0.490	0.540				0.261	-0.091
RAB15	0	0.710	-0.750		1.641	-1.484	0.560	0.491
RAB1A	0	0.980	-0.460				-0.532
ARL3	0	0.820	-0.590
RAB10	0	-0.280	-0.200		1.641	-1.484	0.560	0.491
ARF1	0	0.020	0.040		0.702	-1.163
RALB	0	-0.960	2.060
SRPRB	0	0.920	-0.400	-0.155			-0.328	0.005
SAR1B	0	-1.030	1.290	-0.088			0.687	0.548
RAB3C	0	-1.560	1.830				-0.216
GTPBP8	0	-0.220	-0.060				-2.624
ARF6	0	0.210	-0.560				0.456
ARL5B	0	0.730	-0.650
RAB8B	0	-0.070	0.130	-0.051			0.529	0.549
RAB8B	0	-0.070	0.130		1.641	-1.484	0.560	0.491
RAB8B	0	-0.070	0.130				-0.216
ARF4	0	0.190	-0.710	0.363			0.377	0.309
ARL13B	0	-1.420	2.270
RAB33B	0	-1.210	1.500				0.261	-0.091
RAB1B	0	0.810	-0.570		1.641	-1.484	0.560	0.491
RAB1B	0	0.810	-0.570	-0.279			0.069	0.147
RAB6A	0	-1.080	1.980				0.752	0.721
RAB6A	0	-1.080	1.980		1.078	-1.682
ARL4D	0	0.450	0.320
ARL15	0	-0.680	0.300
RAB12	0	0.390	0.030
ARL2	0	0.770	-1.100
ARL2	0	0.770	-1.100		1.072	-1.021

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ARFRP1	Ubiquitylation	K157	-0.107	0.475	_TAFSDCTSK(gl)IGRR_
ARFRP1	Ubiquitylation	K174	0.422		_DCLTQACSALTGK(gl)GVR_
ARL1	Ubiquitylation	K157	-0.303	-0.196	_WQIFK(gl)TSATK_
ARL13B	Ubiquitylation	K57	0.070		_GIQGEYPEDVAPTVGFSK(gl)INLR_
ARL15	Ubiquitylation	K157	0.908	1.344	_K(gl)YFELEPLAR_
ARL2	Ubiquitylation	K9	-0.349		_GLLTILKK(gl)_
ARL2	Ubiquitylation	K71	-0.521		_LNIWDVGGQK(gl)SLR_
ARL3	Ubiquitylation	K9	0.216		_K(gl)LKSAPDQEVR_
ARL3	Ubiquitylation	K11	-0.579		_LK(gl)SAPDQEVR_
ARL4D	Ubiquitylation	K150	0.255	1.490	_QDQPGALSAAEVEK(gl)R_
ARL5B	Ubiquitylation	K103	-0.284	-0.128	_LAITK(gl)EELYR_
ARL5B	Ubiquitylation	K117	-0.485		_K(gl)AAVLIFANK_
ARL5B	Ubiquitylation	K130	-0.149	-0.080	_QDMK(gl)GCMTAAEISK_
ARL8A	Ubiquitylation	K141	-0.106	-0.468	_DLPGALDEK(gl)ELIEK_
ARL8B	Ubiquitylation	K114	-0.375		_KVTK(gl)GNVTIK_
ARL8B	Ubiquitylation	K193	0.027	-0.061	_DLPNALDEK(gl)QLIEK_
ARL8B	Ubiquitylation	K198	0.185		_QLIEK(gl)MNLSAIQDR_
IFT22	Ubiquitylation	K166		0.816	_YLK(gl)SIINSMSESR_
RAB10	Ubiquitylation	K163		0.199	_LLLGNK(gl)CDMEAK_
RAB10	Ubiquitylation	K174	-0.188		_VQK(gl)EQADKLAR_
RAB10	Ubiquitylation	K213	-0.059	0.420	_DILLK(gl)SGGR_
RAB12	Phosphorylation	S21	-0.451	0.146	_RAGGGGGLGAGS(ph)PALSGGQGR_
RAB12	Ubiquitylation	K172	0.251	0.981	_QQGEK(gl)FAQQITGMR_
RAB15	Ubiquitylation	K163		0.199	_LLLGNK(gl)CDMEAK_
RAB15	Ubiquitylation	K174	-0.188		_VQK(gl)EQADKLAR_
RAB15	Ubiquitylation	K213	-0.059	0.420	_DILLK(gl)SGGR_
RAB1A	Phosphorylation	S2	-0.429	0.634	_(ac)S(ph)SM(ox)NPEYDYLFK_
RAB1A	Phosphorylation	S3	-0.429	0.634	_(ac)S(ph)SM(ox)NPEYDYLFK_
RAB1A	Ubiquitylation	K58	-0.012	-0.593	_TIELDGK(gl)TIK_
RAB1A	Ubiquitylation	K61		-0.593	_TIELDGK(gl)TIK_
RAB1A	Ubiquitylation	K119	0.581	0.444	_YASENVNK(gl)LLVGNK_
RAB1A	Ubiquitylation	K131		0.790	_LLVGNKCDLTTK(gl)K_
RAB1A	Ubiquitylation	K132	-0.154		_LLVGNKCDLTTKK(gl)_
RAB1A	Ubiquitylation	K187	0.229	0.152	_MGPGATAGGAEK(gl)SNVK_
RAB1A	Ubiquitylation	K191	-0.108	0.036	_SNVK(gl)IQSTPVK_
RAB1B	Ubiquitylation	K163		0.199	_LLLGNK(gl)CDMEAK_
RAB1B	Ubiquitylation	K174	-0.188		_VQK(gl)EQADKLAR_
RAB1B	Ubiquitylation	K213	-0.059	0.420	_DILLK(gl)SGGR_
RAB6A	Phosphorylation	S2	-0.159	-0.138	_(ac)S(ph)TGGDFGNPLRK_
RAB6A	Phosphorylation	T3	-0.614	-0.138	_(ac)ST(ph)GGDFGNPLR_
RAB6A	Ubiquitylation	K144	0.298	0.546	_EEAEK(gl)LSADCGMK_
RAB6A	Ubiquitylation	K180	-0.955		_DIYELIK(gl)K_
RAB6B	Phosphorylation	S2	-0.159	-0.138	_(ac)S(ph)TGGDFGNPLRK_
RAB6B	Phosphorylation	T3	-0.614	-0.138	_(ac)ST(ph)GGDFGNPLR_
RAB6B	Ubiquitylation	K144	0.298	0.546	_EEAEK(gl)LSADCGMK_
RAB6B	Ubiquitylation	K180	-0.955		_DIYELIK(gl)K_
RAB8B	Ubiquitylation	K102	-0.105		_SFENISK(gl)WLR_
RAB8B	Ubiquitylation	K163		0.199	_LLLGNK(gl)CDMEAK_
RAB8B	Ubiquitylation	K174	-0.188		_VQK(gl)EQADKLAR_
RAB8B	Ubiquitylation	K213	-0.059	0.420	_DILLK(gl)SGGR_
RALB	Ubiquitylation	K29	0.645		_SK(gl)GQSSLALHK_
RHOT1	Ubiquitylation	K107	-0.322		_TDK(gl)DSRLPLILVGNK_
RHOT1	Ubiquitylation	K187	0.526	0.319	_EMKPACIK(gl)ALTR_
RRAGC	Phosphorylation	S2		0.163	_(ac)S(ph)LQYGAEETPLAGSYGAADSFPK_
RRAGC	Phosphorylation	S15	0.224	-0.282	_(ac)SLQYGAEETPLAGS(ph)YGAADSFPK_
RRAGC	Ubiquitylation	K80	0.785	0.962	_SSIQK(gl)VVFHK_
RRAGC	Phosphorylation	S95		0.296	_MSPNETLFLES(ph)TNK_
RRAGD	Ubiquitylation	K80	0.785	0.962	_SSIQK(gl)VVFHK_
RRAGD	Phosphorylation	S95		0.296	_MSPNETLFLES(ph)TNK_
SAR1A	Ubiquitylation	K146	-0.516	-0.910	_TDAISEEK(gl)LR_
SAR1A	Ubiquitylation	K166	-0.970		_GNVTLK(gl)ELNAR_
SRPRB	Ubiquitylation	K191	-0.160	0.940	_SAK(gl)LIQQQLEK_
SRPRB	Phosphorylation	T214	0.004	0.792	_SAAPST(ph)LDSSSTAPAQLGK_
SRPRB	Ubiquitylation	K227		0.280	_SAAPSTLDSSSTAPAQLGK(gl)K_
SRPRB	Ubiquitylation	K228	-1.460	0.280	_SAAPSTLDSSSTAPAQLGKK(gl)_
TRIM23	Ubiquitylation	K8		-1.906	_(ac)ATLVVNK(gl)LGAGVDSGR_
TRIM23	Ubiquitylation	K357		0.933	_VVLAK(gl)QEITR_
TRIM23	Ubiquitylation	K501		0.711	_LLTEK(gl)ELR_