bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »

bioLOGIC Data

bioLOGIC Data


Exact search


Query: RRAGC

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
W
[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
RRAGC 0 2.367 -0.530 0.100

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
RRAGC Ubiquitylation K80 0.785 0.962 _SSIQK(gl)VVFHK_
RRAGC Phosphorylation S95 0.296 _MSPNETLFLES(ph)TNK_
RRAGC Phosphorylation S2 0.163 _(ac)S(ph)LQYGAEETPLAGSYGAADSFPK_
RRAGC Phosphorylation S15 0.224 -0.282 _(ac)SLQYGAEETPLAGS(ph)YGAADSFPK_

Background Information for RRAGC:


Pubmed-RRAGC »
Uniprot-RRAGC »
Biogrid-RRAGC »
ProteomicsDB-RRAGC »

Tumorportal-RRAGC »
COSMIC-RRAGC »
GenomeRNAi-RRAGC »
Genecards-RRAGC


Protein-protein Interactions for RRAGC
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait FPR2 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait LGALS3 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait LGALS8 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait LGALS9 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait LGALS9C Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait RRAGA Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in RRAGC
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members P-loop_NTPase IPR027417 2.83
Category members Small_GTPase_ARF/SAR IPR006689 0.8
Category members Gtr1_RagA IPR006762 0.63
Category members SRP_receptor_beta_su IPR019009 0.13


Protein complexes (CORUM database) featuring RRAGC
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring RRAGC
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005515 protein binding Database INF
Category members GO Category GO:0005634 nucleus Database INF
Category members GO Category GO:0005737 cytoplasm Database 12.81
Category members GO Category GO:0008380 RNA splicing Database 10.77
Category members GO Category GO:0006915 apoptotic process Database 2.12
Category members Pathway Pathway_724 PID_MTOR_4PATHWAY 0 2
Category members GO Category GO:0006351 transcription, DNA-templated Database 1.07
Category members GO Category GO:0007264 small GTPase mediated signal transduction Database 0.37
Category members GO Category GO:0006184 GTP catabolic process Database 0.29
Category members GO Category GO:0046982 protein heterodimerization activity Database 0.28
Category members GO Category GO:0019003 GDP binding Database 0.18
Category members GO Category GO:0005525 GTP binding Database 0.16
Category members GO Category GO:0003924 GTPase activity Database 0.16
Category members GO Category GO:0034613 cellular protein localization Database 0.04
Category members GO Category GO:0000287 magnesium ion binding Database 0
Category members GO Category GO:0005764 lysosome Database 0
Category members GO Category GO:0016049 cell growth Database 0
Category members GO Category GO:0071230 cellular response to amino acid stimulus Database 0


.

© Copyright Svejstrup Laboratory 2015