RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
SEC61A1	2	1.170	-1.120				0.304	0.263
NOP58	1	-1.330	2.570	0.640			0.767	0.474
DGKD	1	-1.930	3.220
P3H1	1	-2.060	3.660			-0.329	0.349	0.449
LAMTOR1	1	0.700	-0.850	0.343			0.382
XRN2	0	1.050	-0.930	-2.506	-1.121	-0.161	-0.293	-0.304
SLC9A1	0	1.000	-1.310
TGFB1	0	-0.550	1.050
MTPN	0	-1.050	2.170
ERBB2IP	0	0.430	0.290	-0.247			-0.786	-0.105
CCNG1	0	0.760	-0.640
RRAGC	0	-0.530	0.100
RRAGC	0	-0.530	0.100
TGFB3	0	0.900	-0.540
PAK4	0	-0.700	0.980				0.206	-0.937
RPTOR	0	0.520	-1.030				0.623	0.466
ACTA1	0	-0.170	0.010		-0.189	0.025	-0.002	-0.165
ACTA1	0	-0.170	0.010	0.157
WHSC1L1	0	0.780	-0.870				-0.030	0.376
SLC3A2	0	-0.520	0.660	0.690	1.007	-1.149	0.607	0.589
BCL2	0	0.910	-0.740
ATAD3A	0	0.850	-0.370	-0.370			0.372	0.190
ATAD3A	0	0.850	-0.370		0.424	0.052
MTOR	0	-0.680	0.150	0.757			0.074	0.101

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
BCL2	Ubiquitylation	K22	1.480		_YIHYK(gl)LSQR_
CCNG1	Ubiquitylation	K187		0.399	_LEAQLK(gl)ACHCR_
DGKD	Phosphorylation	S56	0.319	0.732	_KVS(ph)TSGQIR_
ERBB2IP	Phosphorylation	S1133		-0.960	_TYS(ph)IDGPNASRPQSARPSINEIPER_
LAMTOR1	Ubiquitylation	K20	-0.365	-0.474	_K(gl)LLLDPSSPPTK_
LAMTOR1	Phosphorylation	S27	-0.440	-0.557	_KLLLDPSS(ph)PPTK_
LAMTOR1	Ubiquitylation	K31	-1.467		_KLLLDPSSPPTK(gl)ALNGAEPNYHSLPSAR_
MTOR	Ubiquitylation	K309	-0.762	0.065	_DLMGFGTK(gl)PR_
MTOR	Ubiquitylation	K1257	-1.167	-0.901	_SGQGDALASGPVETGPMKK(gl)_
MTOR	Ubiquitylation	K1395		-1.255	_AYAK(gl)ALHYK_
MTOR	Ubiquitylation	K2066		-1.004	_GPQTLK(gl)ETSFNQAYGR_
MTOR	Ubiquitylation	K2166		-1.304	_IQSIAPSLQVITSK(gl)QRPR_
MTOR	Phosphorylation	T2471		0.329	_KT(ph)GTTVPESIHSFIGDGLVKPEALNK_
MTPN	Ubiquitylation	K4	0.021		_(ac)CDK(gl)EFMWALK_
MTPN	Phosphorylation	T31		0.488	_GEDVNRT(ph)LEGGR_
MTPN	Ubiquitylation	K90	0.537	-0.107	_LLLSK(gl)GADK_
MTPN	Ubiquitylation	K97	-0.211		_TVK(gl)GPDGLTAFEATDNQAIK_
NOP58	Ubiquitylation	K99		0.941	_LGGVIK(gl)EK_
NOP58	Ubiquitylation	K101	0.257		_LGGVIKEK(gl)_
NOP58	Ubiquitylation	K206	0.689	0.952	_IISDNLTYCK(gl)CLQK_
NOP58	Phosphorylation	S502	0.165	0.048	_HIKEEPLS(ph)EEEPCTSTAIAS(ph)PEK_
NOP58	Phosphorylation	T508		-0.268	_HIKEEPLSEEEPCT(ph)STAIASPEKK_
NOP58	Phosphorylation	S509	-0.281	-0.419	_HIKEEPLS(ph)EEEPCTS(ph)TAIASPEKK_
NOP58	Phosphorylation	T510	1.105		_HIKEEPLSEEEPCTST(ph)AIASPEKK_
NOP58	Phosphorylation	S514	-0.770	-1.030	_EEPLS(ph)EEEPCTSTAIAS(ph)PEK_
PAK4	Phosphorylation	S104	-0.563	-0.422	_RDS(ph)PPPPAR_
PAK4	Phosphorylation	S181	-0.528	-0.724	_DKRPLS(ph)GPDVGTPQPAGLASGAK_
PAK4	Phosphorylation	T207	-0.287	-0.118	_LAAGRPFNT(ph)YPR_
PAK4	Phosphorylation	S291		-3.268	_GAPSPGVLGPHASEPQLAPPACTPAAPAVPGPPGPRS(ph)PQREPQR_
PAK4	Phosphorylation	S474	-0.003	0.050	_S(ph)LVGTPYWMAPELISR_
PAK4	Phosphorylation	T478	0.024		_RKSLVGT(ph)PYWM(ox)APELISR_
RPTOR	Phosphorylation	S722	0.393	1.196	_SVSS(ph)YGNIR_
RPTOR	Phosphorylation	T857	-0.348		_VLDTSSLT(ph)QSAPAS(ph)PTNK_
RPTOR	Phosphorylation	S859	-0.462	-0.346	_VLDTSSLTQS(ph)APASPT(ph)NK_
RPTOR	Phosphorylation	S863	-0.208	-0.001	_VLDTSSLTQS(ph)APAS(ph)PTNK_
RPTOR	Phosphorylation	T865		-0.317	_VLDTSSLTQS(ph)APASPT(ph)NK_
RPTOR	Phosphorylation	S877	-0.114	-0.074	_GVHIHQAGGS(ph)PPASSTSSSSLTNDVAK_
RPTOR	Ubiquitylation	K1008		-0.329	_QAQQVIQK(gl)GITR_
RRAGC	Phosphorylation	S2		0.163	_(ac)S(ph)LQYGAEETPLAGSYGAADSFPK_
RRAGC	Phosphorylation	S15	0.224	-0.282	_(ac)SLQYGAEETPLAGS(ph)YGAADSFPK_
RRAGC	Ubiquitylation	K80	0.785	0.962	_SSIQK(gl)VVFHK_
RRAGC	Phosphorylation	S95		0.296	_MSPNETLFLES(ph)TNK_
SEC61A1	Ubiquitylation	K113		-0.118	_IIEVGDTPK(gl)DR_
SEC61A1	Ubiquitylation	K394		1.586	_TWIEVSGSSAK(gl)DVAK_
SEC61A1	Ubiquitylation	K398		0.253	_DVAK(gl)QLK_
SEC61A1	Ubiquitylation	K401	-1.030	0.553	_QLK(gl)EQQMVMR_
SEC61A1	Phosphorylation	S414		0.827	_ETS(ph)MVHELNR_
SLC3A2	Phosphorylation	S103		0.947	_(ac)S(ph)QDTEVDMKEVELNELEPEK_
SLC3A2	Phosphorylation	T106		1.017	_(ac)S(ph)QDTEVDMKEVELNELEPEKQPMNAASGAAMSLAGAEK_
SLC3A2	Ubiquitylation	K145	1.389	0.982	_NGLVK(gl)IK_
SLC3A2	Ubiquitylation	K147	1.147	0.705	_IK(gl)VAEDEAEAAAAAK_
SLC3A2	Ubiquitylation	K160	-0.471		_VAEDEAEAAAAAK(gl)FTGLSK_
SLC3A2	Ubiquitylation	K166	-0.293	0.631	_FTGLSK(gl)EELLK_
SLC9A1	Phosphorylation	S693	0.458	0.404	_INNYLTVPAHKLDS(ph)PTM(ox)SR_
SLC9A1	Phosphorylation	S703	-0.097	0.010	_IGS(ph)DPLAYEPK_
SLC9A1	Phosphorylation	S785	-0.871	-0.971	_ETSSPGTDDVFTPAPSDS(ph)PSSQR_
TGFB1	Ubiquitylation	K50		-0.557	_GQILSK(gl)LR_
TGFB3	Ubiquitylation	K50		-0.557	_GQILSK(gl)LR_
WHSC1L1	Phosphorylation	S561		1.206	_NEKPTQSVSS(ph)PEATSGSTGSVEK_
XRN2	Ubiquitylation	K132		0.183	_EGMEAAVEK(gl)QR_
XRN2	Phosphorylation	T439	-0.332	-1.539	_RDQPAFTPSGILT(ph)PHALGSR_
XRN2	Phosphorylation	S448	0.425	0.037	_NS(ph)PGSQVASNPR_
XRN2	Phosphorylation	S473	0.104	-0.751	_MQNNSSPS(ph)ISPNTSFTSDGSPSPLGGIK_
XRN2	Phosphorylation	S475		0.436	_MQNNSSPSIS(ph)PNTSFTSDGSPSPLGGIK_
XRN2	Ubiquitylation	K493	-1.223		_MQNNSSPSISPNTSFTSDGSPSPLGGIK(gl)R_
XRN2	Phosphorylation	S499	-1.444		_AEDS(ph)DSEPEPEDNVR_
XRN2	Ubiquitylation	K533	0.431		_NKFDVDAADEK(gl)FR_