RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
CASP8	1	1.120	-1.090
HSP90AB1	1	1.280	-1.050	0.283	0.786	-1.175	0.317	0.463
HMGCS1	1	-1.450	3.080	-0.209				0.030
SLC16A1	1	-0.560	0.200				0.052	0.242
SLC16A1	1	-0.560	0.200	0.565			-1.615	-0.618
MEF2C	0	-0.980	1.550
MEF2C	0	-0.980	1.550
ITGA6	0	-0.530	0.420	-0.133			-0.561	-0.048
EP300	0	-1.210	1.320	-1.089			-1.694	-0.723
RAE1	0	-0.470	0.400
RAE1	0	-0.470	0.400	0.149	-0.423	0.500	0.036	0.464
TGFB1	0	-0.550	1.050
SMAD5	0	0.640	-0.430
CCNB1	0			-0.410	-0.128	0.212	-0.166	-0.523
MDM2	0	-0.210	0.080
TMF1	0	1.240	-1.110				0.028	0.252
BTRC	0	-0.780	0.690	0.532			-1.791	0.313
CTNNB1	0	0.490	-0.230
CTNNB1	0	0.490	-0.230	-0.415			0.628	0.215
MGMT	0	-0.490	1.130		-0.643	0.047
LRRK2	0	0.530	-0.620	-0.240

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
BTRC	Ubiquitylation	K466		0.325	_IVSGAYDGKIK(gl)_
CASP8	Ubiquitylation	K183	1.917		_IINDYEEFSK(gl)ER_
CASP8	Ubiquitylation	K461		-2.031	_NMGK(gl)QMPQPTFTLR_
CCNB1	Ubiquitylation	K18		-0.455	_AK(gl)INMAGAK_
CCNB1	Ubiquitylation	K36	-1.833	-2.301	_VPTAPAATSK(gl)PGLRPR_
CCNB1	Ubiquitylation	K59		-0.659	_VSEQLQAK(gl)MPMK_
CCNB1	Ubiquitylation	K288		0.578	_QMEMK(gl)ILR_
CTNNB1	Ubiquitylation	K158		-1.265	_AIPELTK(gl)LLNDEDQVVVNK_
CTNNB1	Ubiquitylation	K180	-0.546	-0.636	_AAVM(ox)VHQLSK(gl)K_
CTNNB1	Ubiquitylation	K181	-0.717	-0.729	_AAVMVHQLSKK(gl)_
CTNNB1	Phosphorylation	S191	-0.024	0.129	_S(ph)PQMVSAIVR_
CTNNB1	Ubiquitylation	K435		-0.350	_NK(gl)MM(ox)VCQVGGIEALVR_
CTNNB1	Ubiquitylation	K496		-1.262	_LHYGLPVVVK(gl)_
CTNNB1	Phosphorylation	S552	1.233	1.224	_RTS(ph)MGGTQQQFVEGVR_
CTNNB1	Phosphorylation	T556	1.275	0.995	_RTSM(ox)GGT(ph)QQQFVEGVR_
CTNNB1	Ubiquitylation	K671	-0.941	-0.934	_MSEDKPQDYK(gl)K_
EP300	Phosphorylation	S1038	-0.672	-0.349	_TEIKEEEDQPSTSATQSS(ph)PAPGQSK_
EP300	Phosphorylation	S1726	0.994	0.627	_LGLGLDDESNNQQAAATQS(ph)PGDSRR_
EP300	Phosphorylation	S2328	-1.092	0.725	_PQSQPPHSSPS(ph)PR_
HMGCS1	Phosphorylation	S4	-1.161	-1.052	_PGS(ph)LPLNAEACWPK_
HMGCS1	Ubiquitylation	K100		-0.673	_LEVGTETIIDK(gl)SK_
HMGCS1	Ubiquitylation	K102	-1.761	-0.427	_LEVGTETIIDKSK(gl)_
HMGCS1	Ubiquitylation	K273	-0.550	-0.790	_LVQK(gl)SLAR_
HMGCS1	Ubiquitylation	K321	-0.588	-0.833	_AFMK(gl)ASSELFSQK_
HMGCS1	Ubiquitylation	K330		-0.934	_ASSELFSQK(gl)TK_
HMGCS1	Ubiquitylation	K332	-0.326		_ASSELFSQKTK(gl)_
HMGCS1	Ubiquitylation	K409		-0.898	_ITASLCDLK(gl)SR_
HMGCS1	Ubiquitylation	K428		-1.720	_TGVAPDVFAENMK(gl)LR_
HMGCS1	Phosphorylation	S495	-1.763	-1.842	_RPTPNDDTLDEGVGLVHSNIATEHIPS(ph)PAKK_
HSP90AB1	Ubiquitylation	K64	0.829	-0.090	_YESLTDPSK(gl)LDSGKELK_
HSP90AB1	Ubiquitylation	K69	0.661	0.380	_LDSGK(gl)ELK_
HSP90AB1	Ubiquitylation	K72	-1.242	-0.130	_ELK(gl)IDIIPNPQER_
HSP90AB1	Phosphorylation	S226	0.404	0.704	_EKEIS(ph)DDEAEEEK_
HSP90AB1	Phosphorylation	S255	0.525	0.628	_IEDVGS(ph)DEEDDSGKDKK_
HSP90AB1	Phosphorylation	S261	0.520	0.624	_IEDVGSDEEDDS(ph)GKDK_
HSP90AB1	Ubiquitylation	K347	0.110		_RAPFDLFENK(gl)K_
HSP90AB1	Ubiquitylation	K348	-0.096		_RAPFDLFENKK(gl)_
HSP90AB1	Ubiquitylation	K428	0.308		_K(gl)FYEAFSK_
HSP90AB1	Ubiquitylation	K435	0.847	0.933	_FYEAFSK(gl)NLK_
HSP90AB1	Ubiquitylation	K438	1.021	-0.058	_NLK(gl)LGIHEDSTNR_
HSP90AB1	Ubiquitylation	K481	0.811		_MKETQK(gl)SIYYITGESK_
HSP90AB1	Ubiquitylation	K491	0.982	1.512	_SIYYITGESK(gl)EQVANSAFVER_
HSP90AB1	Ubiquitylation	K531	0.745	1.350	_EFDGK(gl)SLVSVTK_
HSP90AB1	Ubiquitylation	K559	0.847	1.549	_AK(gl)FENLCK_
HSP90AB1	Ubiquitylation	K565	-0.066		_FENLCK(gl)LMK_
HSP90AB1	Ubiquitylation	K573	0.243	0.360	_EILDK(gl)KVEK_
HSP90AB1	Ubiquitylation	K574	0.241	0.550	_EILDKK(gl)VEK_
HSP90AB1	Ubiquitylation	K623	0.520	1.081	_DNSTMGYM(ox)MAK(gl)K_
ITGA6	Ubiquitylation	K1116	0.715		_YIDNLEK(gl)K_
ITGA6	Ubiquitylation	K1117		1.453	_YIDNLEKK(gl)_
MDM2	Phosphorylation	S166	0.576	1.068	_AIS(ph)ETEENSDELSGER_
MDM2	Ubiquitylation	K334		-0.872	_ENWLPEDK(gl)GK_
MDM2	Ubiquitylation	K336		-0.872	_ENWLPEDK(gl)GK_
MDM2	Ubiquitylation	K363		0.883	_LENSTQAEEGFDVPDCK(gl)K_
MDM2	Ubiquitylation	K364		0.883	_LENSTQAEEGFDVPDCK(gl)K_
MDM2	Ubiquitylation	K473		0.806	_NK(gl)PCPVCR_
MEF2C	Ubiquitylation	K23		-0.140	_QVTFTK(gl)R_
MEF2C	Phosphorylation	S240	0.008	0.302	_NS(ph)PGLLVSPGNLNK_
MEF2C	Phosphorylation	S406	0.272	0.338	_SEPVS(ph)PPRDR_
MGMT	Ubiquitylation	K39	1.069	0.395	_(ac)MDKDCEMK(gl)R_
MGMT	Ubiquitylation	K209	0.024	-0.353	_LGK(gl)PGLGGSSGLAGAWLK_
RAE1	Ubiquitylation	K108	1.276	0.238	_VFTASCDK(gl)TAK_
RAE1	Ubiquitylation	K111		0.238	_VFTASCDKTAK(gl)_
RAE1	Ubiquitylation	K212	-0.029		_IESPLK(gl)HQHR_
RAE1	Ubiquitylation	K350	-0.657		_GHEFYNPQKK(gl)_
RAE1	Ubiquitylation	K363	-0.288	-1.880	_NAAEELK(gl)PR_
SLC16A1	Ubiquitylation	K191	1.643		_SK(gl)ASLEK(gl)AGK_
SLC16A1	Ubiquitylation	K196	1.643	1.317	_SK(gl)ASLEK(gl)AGK_
SLC16A1	Ubiquitylation	K203	1.190		_SGVK(gl)KDLHDANTDLIGR_
SLC16A1	Ubiquitylation	K204	1.669	0.701	_K(gl)DLHDANTDLIGR_
SLC16A1	Phosphorylation	S441	0.146	0.548	_ES(ph)KEEETSIDVAGKPNEVTK_
SLC16A1	Ubiquitylation	K442	0.797		_ESK(gl)EEETSIDVAGKPNEVTK_
SLC16A1	Phosphorylation	T446	-0.042	0.522	_EEET(ph)SIDVAGKPNEVTK_
SLC16A1	Phosphorylation	S447	0.593	0.575	_EEETS(ph)IDVAGKPNEVTK_
SLC16A1	Ubiquitylation	K453	0.905	-0.086	_ESKEEETSIDVAGK(gl)PNEVTK_
SLC16A1	Ubiquitylation	K459	-0.015		_ESKEEETSIDVAGKPNEVTK(gl)AAESPDQK_
SLC16A1	Phosphorylation	S463	-0.317	-0.135	_AAES(ph)PDQKDTEGGPKEEESPV_
SLC16A1	Ubiquitylation	K467		-0.697	_AAESPDQK(gl)DTEGGPKEEESPV_
SLC16A1	Ubiquitylation	K474		-1.372	_AAESPDQKDTEGGPK(gl)EEESPV_
SLC16A1	Phosphorylation	S478	-0.316	-0.157	_DTEGGPKEEES(ph)PV_
SLC16A1	Phosphorylation	S483	0.251	0.140	_AAES(ph)PDQKDTDGGPKEEESPV_
SLC16A1	Ubiquitylation	K487		-2.206	_AAESPDQK(gl)DTDGGPKEEESPV_
SLC16A1	Ubiquitylation	K494		-2.206	_AAESPDQK(gl)DTDGGPKEEESPV_
SLC16A1	Phosphorylation	S498	-0.205	-0.098	_DTDGGPKEEES(ph)PV_
SMAD5	Ubiquitylation	K64	-2.082	-1.647	_ALSSPGQPSK(gl)CVTIPR_
TGFB1	Ubiquitylation	K50		-0.557	_GQILSK(gl)LR_
TMF1	Phosphorylation	S160		-1.216	_DSSLCVS(ph)GETLAAGTSSPK_
TMF1	Phosphorylation	S344	0.779	-0.050	_SVSEINS(ph)DDELSGK_
TMF1	Phosphorylation	S399	-0.276	-0.307	_S(ph)ATPVNCEQPDILVSSTPINEGQTVLDK_
TMF1	Phosphorylation	T401	-0.276	-0.307	_S(ph)ATPVNCEQPDILVSSTPINEGQTVLDK_