RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
TRIM28	4	-0.250	-0.030	-0.451	-1.012	0.467	-0.209	-0.279
TRIM28	4	-0.250	-0.030
PFKL	1	-0.440	0.680	0.869			1.217	0.915
BCL10	1	0.000	0.200
RRM1	1			0.717	1.039	0.509
RRM2	1
NPM1	1	1.010	-0.750	0.063	-0.066	-0.259
BAX	0	1.590	-1.170				0.811	0.359
SLC9A1	0	1.000	-1.310
SH3GLB1	0	-0.270	0.970
DGKH	0	-1.220	0.820
QPRT	0	0.070	-0.410
CAV1	0	1.150	-0.150
CAV1	0	1.150	-0.150
CAV1	0	1.150	-0.150
TNFAIP3	0	0.760	-0.500
HACL1	0	0.570	-0.190				0.582	-0.243
GRHPR	0	-0.600	0.670				-1.778	-0.778
GRHPR	0	-0.600	0.670	0.454
PFKM	0	-0.290	-0.020	-0.313
PFKM	0	-0.290	-0.020
GJA1	0	-0.410	0.430
AMFR	0	0.190	0.100				-0.357	-0.016
STOML2	0	-1.000	1.080	0.526			0.025	-0.128
TMED10	0	0.230	0.210
DPAGT1	0	0.010	-0.380
CHP1	0	0.130	0.190				-0.105	0.192
NBR1	0	0.470	-0.040	-2.408
BLM	0	1.270	-0.830	-0.850	-0.141	0.144	0.151	0.149
BLM	0	1.270	-0.830

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
AMFR	Phosphorylation	S523		0.058	_SDSIRPALNSPVERPSS(ph)DQEEGETSAQTER_
AMFR	Ubiquitylation	K573		0.073	_FSK(gl)SADER_
BAX	Ubiquitylation	K57		-1.174	_MGGEAPELALDPVPQDASTK(gl)K_
BAX	Ubiquitylation	K58	-1.718	-1.174	_MGGEAPELALDPVPQDASTKK(gl)_
BAX	Ubiquitylation	K64	0.708	1.306	_LSECLK(gl)R_
BCL10	Phosphorylation	S138	1.515	1.393	_SNS(ph)DESNFSEK_
BLM	Phosphorylation	S144		1.234	_KLEFSSS(ph)PDSLSTINDWDDMDDFDTSETSK_
CAV1	Ubiquitylation	K5	0.591	0.963	_(ac)SGGK(gl)YVDSEGHLYTVPIR_
CAV1	Phosphorylation	S6	0.836	0.688	_(ac)ADELS(ph)EKQVYDAHTK_
CAV1	Ubiquitylation	K8	0.244	0.734	_(ac)ADELSEK(gl)QVYDAHTK_
CAV1	Ubiquitylation	K26	0.724	0.894	_EQGNIYK(gl)PNNK_
CAV1	Ubiquitylation	K30	-0.008	0.317	_EQGNIYKPNNK(gl)AMADELSEK_
CAV1	Ubiquitylation	K39	0.690	1.170	_AMADELSEK(gl)QVYDAHTK_
CAV1	Phosphorylation	S76	0.607	0.527	_AMADELS(ph)EK_
CAV1	Ubiquitylation	K176		-0.259	_INLQK(gl)EI_
DGKH	Phosphorylation	S56	0.319	0.732	_KVS(ph)TSGQIR_
DPAGT1	Ubiquitylation	K48	-0.796	0.883	_LCGQDLNK(gl)TSR_
DPAGT1	Ubiquitylation	K310		0.397	_LNIK(gl)TGK_
DPAGT1	Ubiquitylation	K313		0.255	_TGK(gl)LEMSYSK_
DPAGT1	Ubiquitylation	K320		0.794	_LEMSYSK(gl)FK_
DPAGT1	Ubiquitylation	K322		0.794	_LEMSYSK(gl)FK_
GJA1	Ubiquitylation	K109	0.099		_LNKK(gl)EEELK_
GJA1	Ubiquitylation	K128	0.209	1.057	_VAQTDGVNVDMHLK(gl)QIEIK_
GJA1	Ubiquitylation	K136	-0.888		_FK(gl)YGIEEHGK_
GJA1	Ubiquitylation	K243	0.152	0.237	_GK(gl)SDPYHATSGALSPAK_
GJA1	Ubiquitylation	K258	-0.280	0.063	_SDPYHATSGALSPAK(gl)DCGSQK_
GJA1	Ubiquitylation	K303	-0.106	0.280	_NYNK(gl)QASEQNWANYSAEQNR_
GJA1	Ubiquitylation	K345		-0.464	_MGQAGSTISNSHAQPFDFPDDNQNSK(gl)K_
GJA1	Ubiquitylation	K346	-1.004	-0.300	_MGQAGSTISNSHAQPFDFPDDNQNSKK(gl)_
GJA1	Phosphorylation	S364		-0.300	_LAAGHELQPLAIVDQRPS(ph)SR_
GJA1	Phosphorylation	S365		-0.300	_LAAGHELQPLAIVDQRPS(ph)SR_
GJA1	Phosphorylation	S372	0.940	1.430	_AS(ph)SRPRPDDLEI_
GJA1	Phosphorylation	S373	0.664	0.467	_ASS(ph)RPRPDDLEI_
HACL1	Ubiquitylation	K234		-0.466	_GAAYAHAEESIK(gl)K_
HACL1	Ubiquitylation	K365		-0.881	_SNEAASK(gl)ELASKK_
HACL1	Ubiquitylation	K540	-1.467		_GYFVQTPEELQK(gl)SLR_
NBR1	Ubiquitylation	K464	-0.807	-2.087	_LSHK(gl)GQQFGPR_
NBR1	Ubiquitylation	K515	-0.852		_TDDLTCQQEETFLLAK(gl)EER_
NBR1	Ubiquitylation	K539	-0.515	-0.635	_QLGEVTEQTEGTAACIPQKAK(gl)_
NBR1	Ubiquitylation	K627	-0.779	-1.425	_ALPDSMVSVK(gl)R_
NBR1	Ubiquitylation	K767	-1.436		_GAEGK(gl)PGVEAGQEPAEAGER_
NPM1	Phosphorylation	S4	-0.102	0.205	_(ac)MEDS(ph)MDMDMSPLRPQNYLFGCELK_
NPM1	Phosphorylation	S10	0.493	0.606	_(ac)MEDSMDM(ox)DM(ox)S(ph)PLRPQNYLFGCELK_
NPM1	Phosphorylation	Y67	0.604	0.383	_TVSLGAGAKDELHIVEAEAMNY(ph)EGSPIKVTLATLK_
NPM1	Phosphorylation	S70	0.285	0.333	_TVSLGAGAKDELHIVEAEAMNYEGS(ph)PIK_
NPM1	Phosphorylation	T75	0.611	0.229	_DELHIVEAEAMNYEGSPIKVT(ph)LATLK_
NPM1	Phosphorylation	T78		0.397	_TVSLGAGAKDELHIVEAEAMNYEGSPIKVTLAT(ph)LK_
NPM1	Phosphorylation	S125	0.202	0.017	_CGSGPVHISGQHLVAVEEDAES(ph)EDEEEEDVK_
NPM1	Phosphorylation	S139		-0.611	_LLSIS(ph)GKR_
NPM1	Ubiquitylation	K141	0.568	1.699	_LLSISGK(gl)R_
NPM1	Ubiquitylation	K150	-1.308	0.669	_SAPGGGSK(gl)VPQKK_
NPM1	Ubiquitylation	K202	0.335	0.204	_SIRDTPAK(gl)NAQK_
NPM1	Phosphorylation	S227		0.788	_SKGQES(ph)FKK_
NPM1	Phosphorylation	S243	-0.070	0.063	_GPSS(ph)VEDIK_
NPM1	Ubiquitylation	K248	0.294	1.847	_GPSSVEDIK(gl)AK_
NPM1	Ubiquitylation	K250	0.931	1.267	_AK(gl)MQASIEK_
NPM1	Phosphorylation	S254	-0.677	0.371	_MQAS(ph)IEK_
NPM1	Ubiquitylation	K257	0.236	0.753	_MQASIEK(gl)GGSLPK_
NPM1	Phosphorylation	S260	-0.202	0.203	_GGS(ph)LPKVEAK_
NPM1	Ubiquitylation	K267	0.954	1.794	_VEAK(gl)FINYVK_
PFKL	Ubiquitylation	K365		-0.860	_AMDDK(gl)RFDEATQLR_
PFKL	Ubiquitylation	K469		0.001	_GGSMLGTK(gl)R_
PFKL	Ubiquitylation	K616	0.588	-0.447	_MK(gl)TDIQR_
PFKL	Ubiquitylation	K677	0.140	-0.035	_NYGTK(gl)LGVK_
PFKL	Phosphorylation	S775	1.454	1.553	_RTLS(ph)MDKGF_
PFKM	Ubiquitylation	K178		-0.734	_AAYNLVK(gl)R_
PFKM	Ubiquitylation	K215	-0.787	-0.246	_AGK(gl)ITDEEATK_
PFKM	Ubiquitylation	K427		-0.699	_LPLMECVQVTK(gl)DVTK_
PFKM	Ubiquitylation	K431		-0.696	_DVTK(gl)AMDEK_
QPRT	Ubiquitylation	K183	-0.856	0.122	_DNHVVAAGGVEK(gl)AVR_
QPRT	Ubiquitylation	K288	-0.425	-1.002	_LFAK(gl)EVAPVPK_
RRM1	Ubiquitylation	K158	0.366	0.759	_SYLLK(gl)INGK_
RRM1	Ubiquitylation	K376	0.409	0.370	_LYASYEK(gl)QGR_
RRM1	Ubiquitylation	K414		0.015	_K(gl)SNQQNLGTIK_
RRM1	Ubiquitylation	K465	-0.049	0.272	_K(gl)LAEVTK_
RRM1	Ubiquitylation	K471	1.117	1.347	_LAEVTK(gl)VVVR_
RRM1	Ubiquitylation	K496	0.699	1.559	_IIDINYYPVPEACLSNK(gl)R_
RRM1	Ubiquitylation	K587		0.487	_VLKEK(gl)IAK_
RRM1	Ubiquitylation	K590	-0.395	0.551	_IAK(gl)YGIR_
RRM1	Ubiquitylation	K689		0.606	_TVWEISQK(gl)TVLK_
RRM1	Ubiquitylation	K693		0.427	_TVLK(gl)MAAER_
RRM1	Ubiquitylation	K733		0.748	_QGLK(gl)TGMYYLR_
RRM1	Ubiquitylation	K754	-0.746	-1.217	_TRPAANPIQFTLNK(gl)EK_
RRM1	Ubiquitylation	K756	-0.746	-1.217	_TRPAANPIQFTLNK(gl)EK_
RRM2	Phosphorylation	S80	-1.483	-1.780	_VPLAPITDPQQLQLS(ph)PLK_
RRM2	Phosphorylation	T93	-1.284	-0.534	_GLSLVDKENT(ph)PPALSGTR_
RRM2	Ubiquitylation	K106		-0.247	_VLASK(gl)TAR_
RRM2	Ubiquitylation	K121	-2.427	-0.884	_TK(gl)AAAPGVEDEPLLR_
RRM2	Ubiquitylation	K424	2.394	-0.588	_TNFFEK(gl)R_
SH3GLB1	Ubiquitylation	K10	-0.072		_(ac)MNIMDFNVKK(gl)_
SLC9A1	Phosphorylation	S693	0.458	0.404	_INNYLTVPAHKLDS(ph)PTM(ox)SR_
SLC9A1	Phosphorylation	S703	-0.097	0.010	_IGS(ph)DPLAYEPK_
SLC9A1	Phosphorylation	S785	-0.871	-0.971	_ETSSPGTDDVFTPAPSDS(ph)PSSQR_
STOML2	Ubiquitylation	K222		-0.107	_ESAINVAEGKK(gl)_
STOML2	Phosphorylation	T327	-0.188	-0.227	_APVPGT(ph)PDSLSSGSSR_
TMED10	Ubiquitylation	K146		-0.149	_NYEEIAK(gl)VEK_
TNFAIP3	Ubiquitylation	K722	0.496	0.176	_ASCK(gl)NILACR_
TRIM28	Phosphorylation	S4		-0.337	_(ac)AAS(ph)AAAASAAAASAASGSPGPGEGSAGGEK_
TRIM28	Phosphorylation	S14	-0.154		_(ac)AASAAAASAAAAS(ph)AASGSPGPGEGSAGGEK_
TRIM28	Phosphorylation	S17	-0.227	-0.026	_(ac)AASAAAASAAAASAAS(ph)GSPGPGEGSAGGEK_
TRIM28	Phosphorylation	S19	-0.068	-0.189	_(ac)AASAAAASAAAASAASGS(ph)PGPGEGSAGGEK_
TRIM28	Phosphorylation	S26		0.197	_(ac)AASAAAASAAAASAASGSPGPGEGS(ph)AGGEK_
TRIM28	Phosphorylation	S41		0.373	_RSTAPSAAAS(ph)ASASAAASSPAGGGAEALELLEHCGVCR_
TRIM28	Phosphorylation	S43	0.010		_RSTAPSAAASAS(ph)ASAAASSPAGGGAEALELLEHCGVCR_
TRIM28	Phosphorylation	S49	-0.388	-0.110	_STAPSAAASASASAAAS(ph)SPAGGGAEALELLEHCGVCR_
TRIM28	Phosphorylation	S50	-0.113	0.075	_RSTAPSAAASASASAAASS(ph)PAGGGAEALELLEHCGVCR_
TRIM28	Ubiquitylation	K254	0.323	0.381	_K(gl)LLASLVK_
TRIM28	Ubiquitylation	K261	1.520	0.923	_LLASLVK(gl)R_
TRIM28	Ubiquitylation	K266	0.465	-0.005	_LGDK(gl)HATLQK_
TRIM28	Ubiquitylation	K272	1.576	-0.085	_LGDKHATLQK(gl)STK_
TRIM28	Ubiquitylation	K319	0.332	0.451	_VLVNDAQK(gl)VTEGQQER_
TRIM28	Ubiquitylation	K337	0.976		_QHWTM(ox)TK(gl)IQK_
TRIM28	Ubiquitylation	K340	0.112	-0.105	_IQK(gl)HQEHILR_
TRIM28	Ubiquitylation	K407	-2.105		_SAEAFGK(gl)IVAERPGTNSTGPAPMAPPR_
TRIM28	Phosphorylation	S471	3.215	2.215	_S(ph)RSGEGEVSGLM(ox)R_
TRIM28	Phosphorylation	S473	3.049	2.476	_S(ph)GEGEVSGLMR_
TRIM28	Phosphorylation	S489	0.264	0.043	_VS(ph)LERLDLDLTADSQPPVFK_
TRIM28	Phosphorylation	T498		0.265	_VSLERLDLDLT(ph)ADSQPPVFK_
TRIM28	Phosphorylation	T541	3.001	1.292	_GAAAAATGQPGTAPAGT(ph)PGAPPLAGMAIVK_
TRIM28	Phosphorylation	S594		1.033	_LAS(ph)PSGSTSSGLEVVAPEGTSAPGGGPGTLDDSATICR_
TRIM28	Phosphorylation	S624		-1.117	_LASPSGSTSSGLEVVAPEGTSAPGGGPGTLDDS(ph)ATICR_
TRIM28	Phosphorylation	S681		1.735	_EEDGS(ph)LSLDGADSTGVVAK_
TRIM28	Phosphorylation	S752	0.314	0.567	_LQEKLS(ph)PPYSSPQEFAQDVGR_
TRIM28	Phosphorylation	S756	-0.408		_LSPPYS(ph)SPQEFAQDVGR_
TRIM28	Ubiquitylation	K770		0.289	_MFK(gl)QFNK_
TRIM28	Ubiquitylation	K779	0.334	2.706	_LTEDK(gl)ADVQSIIGLQR_