RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
KAT6A	1	0.100	-0.500				0.334	0.461
TCF7L1	1	-2.040	2.970	-0.741
SKI	1	-1.870	2.800		-1.139	-0.588
VPS72	1	2.120	-1.200				-0.447	-0.072
FGFR3	0	-1.120	1.390
HES1	0	-0.940	0.860
SOX4	0	1.610	-0.930
YAP1	0	1.010	-0.370
PRDM16	0	-1.320	2.300		-0.189	0.565		-1.171
TCF7L2	0	-0.550	0.790	-0.741
HMGA2	0	0.340	-0.490
VANGL2	0	-1.030	1.450
RBPJ	0	1.900	-0.160	-0.367	0.284	0.723	-0.090	0.134
LDB2	0			-1.168
ZHX2	0	-0.240	0.680		-0.053	0.857
SOX2	0	-0.250	0.870
LDB1	0	0.670	-0.650	-1.168

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
FGFR3	Ubiquitylation	K205		-0.115	_IGGIK(gl)LR_
HES1	Ubiquitylation	K66		0.212	_TLILDALK(gl)K_
HES1	Ubiquitylation	K67		0.212	_TLILDALK(gl)K_
HES1	Ubiquitylation	K109	-0.891		_AQMTAALSTDPSVLGK(gl)YR_
HMGA2	Phosphorylation	S44	-0.564	-0.762	_KQQQEPTGEPS(ph)PK_
HMGA2	Phosphorylation	S105	-0.055	-0.046	_KPAQEETEETSSQES(ph)AEED_
KAT6A	Phosphorylation	S473		2.569	_LFGS(ph)QEIMTEK_
KAT6A	Phosphorylation	S1001	-0.884	-0.411	_SSS(ph)PPILTKPTLK_
KAT6A	Phosphorylation	S1089	0.499	0.643	_RLS(ph)SQDVLR_
KAT6A	Phosphorylation	S1090	0.740	1.024	_RLSS(ph)QDVLR_
KAT6A	Phosphorylation	S1113		-0.700	_SKDEEEDEES(ph)DDADDTPILKPVSLLR_
LDB1	Ubiquitylation	K76		-0.052	_IFELNK(gl)R_
LDB1	Ubiquitylation	K271		-0.154	_DCLK(gl)TCLFQK_
LDB1	Ubiquitylation	K277	-1.611	-0.630	_TCLFQK(gl)WQR_
LDB1	Phosphorylation	S323	-0.402	-0.031	_KS(ph)PASTFALSSQVPDVMVVGEPTLMGGEFGDEDER_
LDB2	Ubiquitylation	K76		-0.052	_IFELNK(gl)R_
LDB2	Ubiquitylation	K271		-0.154	_DCLK(gl)TCLFQK_
LDB2	Ubiquitylation	K277	-1.611	-0.630	_TCLFQK(gl)WQR_
LDB2	Phosphorylation	S323	-0.402	-0.031	_KS(ph)PASTFALSSQVPDVMVVGEPTLMGGEFGDEDER_
PRDM16	Phosphorylation	S62	-1.041	-0.744	_EGS(ph)PYKAPIYIPDDIPIPAEFELR_
PRDM16	Phosphorylation	S1039	-0.074	0.136	_NFIGNSNHGSQS(ph)PR_
SKI	Ubiquitylation	K294	-0.126	-0.054	_AYILLSQDYTGK(gl)EEQAR_
SKI	Ubiquitylation	K365	-0.244	-0.390	_TLAGSSNK(gl)SLGCVHPR_
SKI	Phosphorylation	S431		-0.475	_VVS(ph)SPPCAAAVSR_
SKI	Phosphorylation	S432	-0.742	-0.438	_VVSS(ph)PPCAAAVSR_
SKI	Phosphorylation	S480	-1.160	-1.491	_LTVDTPGAPETLAPVAAPEEDKDS(ph)EAEVEVESR_
SOX2	Phosphorylation	S251	0.157	-0.109	_SEASSS(ph)PPVVTSSSHSR_
SOX4	Phosphorylation	S354		-0.003	_SSAASSPAAGRS(ph)PADHR_
TCF7L1	Ubiquitylation	K88	-0.867	-0.222	_ESLEEAAK(gl)R_
TCF7L2	Ubiquitylation	K88	-0.867	-0.222	_ESLEEAAK(gl)R_
VANGL2	Ubiquitylation	K379	0.582		_LQEEEQK(gl)NPR_
YAP1	Phosphorylation	S61	-0.064	0.017	_GDS(ph)ETDLEALFNAVMNPK_
YAP1	Phosphorylation	T63	-0.159	-0.257	_GDSET(ph)DLEALFNAVM(ox)NPK_
YAP1	Phosphorylation	T110		0.467	_QAST(ph)DAGTAGALTPQHVR_
YAP1	Phosphorylation	S127		-1.544	_AHS(ph)SPASLQLGAVSPGTLTPTGVVSGPAATPTAQHLR_
YAP1	Phosphorylation	S131	-1.256	-1.096	_AHSSPAS(ph)LQLGAVSPGTLTPTGVVSGPAATPTAQHLR_
YAP1	Ubiquitylation	K315	-0.002		_LQQLQMEK(gl)ER_
YAP1	Ubiquitylation	K321	-1.043		_LK(gl)QQELLR_
YAP1	Ubiquitylation	K342	-0.589		_NINPSTANSPK(gl)CQELALR_
YAP1	Phosphorylation	S367		0.272	_SQLPTLEQDGGTQNPVSS(ph)PGMSQELR_
YAP1	Phosphorylation	S397	-0.200		_DES(ph)TDSGLSM(ox)SSYSVPR_