RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
HDAC1	1	-1.980	4.450
HDAC1	1	-1.980	4.450	-0.122	0.307	0.969	0.094	0.191
RBBP4	1	2.110	-1.240	0.533	-0.610	0.648
MTA1	1	0.420	-0.750	0.270	0.038	0.594	0.680	0.342
HDAC2	1	-2.390	4.970
HDAC2	1	-2.390	4.970	0.187	-0.007	0.825
MTA3	0	-0.430	1.040
MTA3	0	-0.430	1.040	0.282	0.258	0.926	0.072	0.430
MBD3	0	0.730	-1.260	0.210	0.189	0.976	0.079	0.453
CSNK2A1	0	0.050	-0.020	0.030	-0.550	1.362	0.022	-0.045
RBBP7	0	-0.080	-0.020	0.602	0.336	0.890	0.363	0.402
RBBP7	0	-0.080	-0.020	0.397	0.000	0.776
RBBP7	0	-0.080	-0.020
SALL1	0			-0.080	0.063	0.213	0.247	0.009
CHD4	0	0.740	-0.710	-2.910			-0.998	-0.326
CHD4	0	0.740	-0.710	0.187	0.222	0.572	0.098	0.155
APPL2	0	0.480	-0.340
MTA2	0	-1.360	1.910	0.507	0.478	0.899	0.023	0.072
APPL1	0	1.130	-0.340
SALL2	0	0.260	-0.270	-0.080	0.063	0.213	0.247	0.009
SALL2	0	0.260	-0.270	-1.479			-1.326	-0.737
GATAD2A	0	0.970	-0.980	-0.231	0.039	0.770	-0.463	-0.544
CHD3	0	-1.560	2.320	-2.910			-0.998	-0.326
CHD3	0	-1.560	2.320	0.225	0.227	0.558
CHD3	0	-1.560	2.320				0.549	0.482

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
APPL1	Ubiquitylation	K66	-1.174	0.359	_LLK(gl)EYEK_
APPL1	Ubiquitylation	K124		-0.697	_DLK(gl)EILTLK_
APPL1	Ubiquitylation	K289		0.154	_NK(gl)TGLVSSTWDR_
APPL1	Ubiquitylation	K351	-0.236	0.892	_YCFQITSFDGKK(gl)_
APPL1	Phosphorylation	T399	-0.185		_VNQSALEAVT(ph)PSPSFQQR_
APPL1	Phosphorylation	S401	-0.233	-0.423	_VNQSALEAVTPS(ph)PSFQQR_
APPL1	Ubiquitylation	K638	-0.311	0.401	_ASEK(gl)QKEIER_
APPL2	Ubiquitylation	K226		0.352	_GAEMFSK(gl)R_
CHD3	Phosphorylation	S402		0.539	_EGIQWEAKEDNS(ph)EGEEILEEVGGDLEEEDDHHMEFCR_
CHD3	Phosphorylation	S489	-1.030	-2.127	_WGQPPS(ph)PTPVPRPPDADPNTPSPK_
CHD3	Phosphorylation	T491		-2.659	_WGQPPS(ph)PTPVPRPPDADPNTPSPK_
CHD3	Phosphorylation	S772	-0.647	-1.419	_KELQGDGPPSS(ph)PTNDPTVK_
CHD3	Phosphorylation	T774		-0.442	_ELQGDGPPSSPT(ph)NDPTVK_
CHD3	Phosphorylation	S1509	-0.565	-0.704	_MSQPGS(ph)PSPK_
CHD3	Phosphorylation	T1514		-1.082	_T(ph)PTPSTPGDTQPNTPAPVPPAEDGIK_
CHD3	Phosphorylation	T1519		-1.446	_TPTPST(ph)PGDTQPNTPAPVPPAEDGIK_
CHD3	Phosphorylation	T1527	-2.218	-2.475	_TPTPS(ph)TPGDTQPNT(ph)PAPVPPAEDGIK_
CHD3	Phosphorylation	S1544	1.206	1.130	_IEENS(ph)LKEEESIEGEK_
CHD3	Phosphorylation	S1660	-0.273	-0.515	_METEADAPS(ph)PAPSLGER_
CHD4	Phosphorylation	S402		0.539	_EGIQWEAKEDNS(ph)EGEEILEEVGGDLEEEDDHHMEFCR_
CHD4	Phosphorylation	S489	-1.030	-2.127	_WGQPPS(ph)PTPVPRPPDADPNTPSPK_
CHD4	Phosphorylation	T491		-2.659	_WGQPPS(ph)PTPVPRPPDADPNTPSPK_
CHD4	Ubiquitylation	K884		0.702	_NNQSK(gl)FFR_
CHD4	Ubiquitylation	K959	-0.609		_LK(gl)ADVFK_
CHD4	Phosphorylation	S1509	-0.565	-0.704	_MSQPGS(ph)PSPK_
CHD4	Phosphorylation	T1514		-1.082	_T(ph)PTPSTPGDTQPNTPAPVPPAEDGIK_
CHD4	Phosphorylation	T1519		-1.446	_TPTPST(ph)PGDTQPNTPAPVPPAEDGIK_
CHD4	Phosphorylation	T1527	-2.218	-2.475	_TPTPS(ph)TPGDTQPNT(ph)PAPVPPAEDGIK_
CHD4	Phosphorylation	S1544	1.206	1.130	_IEENS(ph)LKEEESIEGEK_
CHD4	Ubiquitylation	K1778		0.999	_GNFLEIK(gl)NK_
CHD4	Ubiquitylation	K1780		0.999	_GNFLEIK(gl)NK_
CHD4	Ubiquitylation	K1844	-0.796		_ESMAGNK(gl)PANAVLHK_
CHD4	Ubiquitylation	K1865	-0.216		_QLEELLSDMK(gl)ADVTR_
CSNK2A1	Ubiquitylation	K71	0.008		_ILK(gl)PVKK_
CSNK2A1	Ubiquitylation	K329	-0.661	-0.889	_EAMEHPYFYTVVK(gl)DQAR_
GATAD2A	Phosphorylation	T68	-0.595		_GLLASDLNTDGDM(ox)RVT(ph)PEPGAGPTQGLLR_
GATAD2A	Phosphorylation	S119	-0.992	-0.978	_RPPS(ph)PDVIVLSDNEQPSSPR_
GATAD2A	Phosphorylation	S132	-0.919		_RPPS(ph)PDVIVLSDNEQPS(ph)SPR_
GATAD2A	Phosphorylation	S133	-0.992		_RPPS(ph)PDVIVLSDNEQPSS(ph)PR_
GATAD2A	Phosphorylation	T194	-0.162	0.323	_EAT(ph)AQKPTGSVGSTVTTPPPLVR_
GATAD2A	Phosphorylation	T208		0.247	_EATAQKPTGSVGSTVTT(ph)PPPLVR_
GATAD2A	Phosphorylation	S359	-1.184	-0.716	_GTTATSAQANSTPTSVASVVTSAES(ph)PASR_
HDAC1	Ubiquitylation	K50	0.036		_K(gl)MEIYRPHK_
HDAC1	Ubiquitylation	K66		-0.593	_ANAEEMTK(gl)YHSDDYIK_
HDAC1	Ubiquitylation	K74	0.620	-1.473	_YHSDDYIK(gl)FLR_
HDAC1	Ubiquitylation	K89	0.749	-0.241	_SIRPDNMSEYSK(gl)QMQR_
HDAC1	Phosphorylation	S393	-1.133	-1.144	_M(ox)LPHAPGVQM(ox)QAIPEDAIPEES(ph)GDEDEDDPDKR_
HDAC1	Phosphorylation	S409	1.326	1.144	_ISICS(ph)SDKR_
HDAC1	Phosphorylation	S410	1.326	1.144	_ISICS(ph)SDKR_
HDAC1	Ubiquitylation	K412	0.642	-0.744	_ISICSSDK(gl)R_
HDAC2	Ubiquitylation	K50	0.036		_K(gl)MEIYRPHK_
HDAC2	Ubiquitylation	K67		-0.467	_ATAEEMTK(gl)YHSDEYIK_
HDAC2	Ubiquitylation	K89	0.749	-0.241	_SIRPDNMSEYSK(gl)QMQR_
HDAC2	Ubiquitylation	K284	0.749		_GHAK(gl)CVEVVK_
HDAC2	Phosphorylation	S394	-0.865	-0.997	_M(ox)LPHAPGVQM(ox)QAIPEDAVHEDS(ph)GDEDGEDPDKR_
HDAC2	Phosphorylation	S422	0.482	0.781	_IACDEEFS(ph)DSEDEGEGGR_
MBD3	Ubiquitylation	K42	-0.711		_DVFYYSPSGKK(gl)_
MBD3	Phosphorylation	S56	0.663	0.474	_YLGGS(ph)MDLSTFDFR_
MBD3	Phosphorylation	S85	0.574	0.485	_VRYDS(ph)SNQVK_
MBD3	Ubiquitylation	K92	-0.542		_GK(gl)PDLNTALPVR_
MBD3	Ubiquitylation	K124	0.195		_ITNHPSNKVK(gl)_
MBD3	Ubiquitylation	K129	-0.498		_SDPQK(gl)AVDQPR_
MTA1	Ubiquitylation	K164		-1.108	_TLLADK(gl)GEIR_
MTA1	Ubiquitylation	K340	1.655		_TTDRYVQQK(gl)R_
MTA1	Ubiquitylation	K352		-0.839	_AAEAESKLK(gl)_
MTA1	Phosphorylation	S446	-0.199		_S(ph)NM(ox)SPHGLPAR_
MTA1	Phosphorylation	S449	0.341	0.243	_SNMS(ph)PHGLPAR_
MTA1	Ubiquitylation	K462	-0.047		_SSGSPK(gl)FAMK_
MTA1	Phosphorylation	S520	-0.126		_LPEAS(ph)QSPLVLK_
MTA1	Phosphorylation	S522	0.104	0.178	_LPEASQS(ph)PLVLK_
MTA1	Ubiquitylation	K527	-0.182	-0.384	_LPEASQSPLVLK(gl)QAVR_
MTA1	Phosphorylation	T564	-0.749	-1.930	_SVSSVLSSLT(ph)PAK_
MTA1	Phosphorylation	S576	-1.765	-1.404	_VAPVINNGS(ph)PTILGK_
MTA2	Ubiquitylation	K32	0.007		_RIEELNK(gl)TANGNVEAK_
MTA2	Phosphorylation	S54	0.469	0.399	_DISSS(ph)LNSLADSNAR_
MTA2	Ubiquitylation	K71	0.012		_EFEEESK(gl)QPGVSEQQR_
MTA2	Ubiquitylation	K152	0.194	0.043	_VGCK(gl)YQAEIPDRLVEGESDNR_
MTA2	Ubiquitylation	K173	-0.127		_LVEGESDNRNQQK(gl)MEMK_
MTA2	Ubiquitylation	K177	-0.885		_MEMK(gl)VWDPDNPLTDR_
MTA2	Ubiquitylation	K320	0.565		_TTDRYIQQK(gl)R_
MTA2	Ubiquitylation	K405	-0.377		_YGGLK(gl)TPTQLEGATR_
MTA2	Phosphorylation	S435		-0.289	_GHLSRPEAQSLS(ph)PYTTSANR_
MTA2	Ubiquitylation	K508	-0.512		_TPLK(gl)IHPLVR_
MTA2	Ubiquitylation	K531	-0.796		_DLVAQAPLK(gl)PK_
MTA2	Phosphorylation	T534		-0.765	_DLVAQAPLKPKT(ph)PR_
MTA2	Ubiquitylation	K559	0.516		_GLGGIMVK(gl)R_
MTA2	Ubiquitylation	K611	-1.680		_LNPADAPNPVVFVATK(gl)DTR_
MTA3	Ubiquitylation	K32	-0.505		_RIEELNK(gl)TASGNVEAK_
MTA3	Phosphorylation	S428		0.030	_MPTQSEEEKLS(ph)PSPTTEDPR_
MTA3	Ubiquitylation	K509	-0.005	-0.041	_AECK(gl)MLLNS_
MTA3	Phosphorylation	S519	0.339	-0.158	_HAELSGS(ph)PLK_
RBBP4	Ubiquitylation	K4	0.699	0.574	_(ac)ADK(gl)EAAFDDAVEER_
RBBP4	Ubiquitylation	K160	-1.765		_HPSK(gl)PDPSGECNPDLR_
RBBP7	Phosphorylation	S3	1.036	1.447	_(ac)AS(ph)KEMFEDTVEER_
RBBP7	Ubiquitylation	K4	0.122	-0.804	_(ac)ASK(gl)EMFEDTVEER_
RBBP7	Ubiquitylation	K21	0.081	-0.004	_VINEEYK(gl)IWK_
RBBP7	Phosphorylation	S145	0.319	1.248	_TPS(ph)SDVLVFDYTK_
RBBP7	Ubiquitylation	K159	-1.249	-3.808	_HPAK(gl)PDPSGECNPDLR_
RBBP7	Ubiquitylation	K214		-0.021	_EGK(gl)IVDAK_
RBBP7	Ubiquitylation	K236		0.469	_DSSVK(gl)LYQTR_
SALL1	Phosphorylation	S1119	-1.156	-1.235	_DTPTSHVPSGPLSSSATS(ph)PVLLPALPR_
SALL2	Ubiquitylation	K515	-1.115		_FVLMK(gl)AVEPK_
SALL2	Ubiquitylation	K522	-1.318	-1.842	_NK(gl)ADENTPPGSEGSAISGVAESSTATR_
SALL2	Ubiquitylation	K598	0.186	-0.445	_LQQLVEK(gl)IDR_
SALL2	Phosphorylation	S802	0.187	0.081	_GDS(ph)EEASGAEEEVGTVAAAATAGK_
SALL2	Phosphorylation	S806	0.101	0.212	_GDSEEAS(ph)GAEEEVGTVAAAATAGK_
SALL2	Phosphorylation	S1119	-1.156	-1.235	_DTPTSHVPSGPLSSSATS(ph)PVLLPALPR_