RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
GOLGA5	1	-0.670	0.800					1.692
CIT	1	-1.740	3.570				-1.113	0.349
GOLGB1	1	-1.020	1.510
GOLGB1	1	-1.020	1.510				0.400	0.360
FBXW8	1	2.140	-1.050		-0.439	0.088
HTT	1	-0.200	-0.360	0.632			0.847	0.550
CUL7	0	1.580	-1.240	-1.778	-0.501	-0.333	-0.058	0.103
ARFGEF1	0
CDC42	0	-0.170	0.490	-0.597			-1.527	-1.013
CDC42	0	1.240	-0.940	-0.597			-1.527	-1.013
LMAN1	0						0.562	0.393
LMAN1	0
TMED2	0	0.150	-0.370				1.086	0.949
COG4	0	0.050	0.840
SEC23IP	0	1.130	-0.980
SEC23IP	0	1.130	-0.980
ARHGAP21	0	1.110	-0.680				0.484	0.639
GOLPH3	0	-0.460	0.270	-0.591
GORASP1	0	-0.370	0.290
PLEKHM2	0	0.070	-0.510
BLZF1	0	0.290	-0.530
ATL2	0	1.320	-0.730	0.122			-1.518	-0.009
ARL1	0	0.440	-0.340				0.333	0.219
ARL1	0	0.440	-0.340
ARL1	0	0.440	-0.340	-0.005
OPTN	0
OBSL1	0	1.180	-0.790			-0.334	0.980
SYNE1	0	-0.990	2.410				0.468
COG2	0	-0.970	1.420
STX17	0	-1.260	1.910
DYM	0	1.130	-0.370
USP6NL	0	1.020	-0.820
CTBP1	0	-0.410	0.390
CTBP1	0	-0.410	0.390	-0.293	-0.875	0.361	0.407	-0.049
CTBP1	0	-0.410	0.390	1.494	-0.398	0.504	0.897	-0.123
TMED10	0	0.230	0.210
VCPIP1	0	-0.620	1.050
NPLOC4	0	1.900	-1.110	0.105			-0.588	-0.098
PRKD1	0	1.050	0.130
PRKD1	0	1.050	0.130
PRKD1	0	1.050	0.130
ATL3	0	0.330	0.030	1.194			0.678	1.040
TMED9	0	-0.240	0.980	0.791			0.599	0.836
DYNC2H1	0	-1.530	1.820				-0.319	0.050
DYNC2H1	0	-1.530	1.820	0.313
MYO18A	0	0.100	-0.380				0.610	0.207

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ARFGEF1	Phosphorylation	T48	-0.052	-0.113	_ACEVALEEIKAET(ph)EKQSPPHGEAK_
ARFGEF1	Phosphorylation	S52	-0.014	-0.100	_AETEKQS(ph)PPHGEAK_
ARHGAP21	Phosphorylation	S318	-0.570	-0.616	_TTS(ph)PPLSIPTTHLIHQPAGSR_
ARHGAP21	Phosphorylation	S458		0.574	_SVS(ph)QERLEDSVLMK_
ARHGAP21	Phosphorylation	S474		0.062	_S(ph)ASQGALTSPSVSFSNHR_
ARHGAP21	Phosphorylation	S476		0.570	_SAS(ph)QGALTSPSVSFSNHR_
ARHGAP21	Phosphorylation	S1098	-0.283	0.103	_TQSPHS(ph)PKEESERK_
ARHGAP21	Phosphorylation	S1377		0.244	_TGVS(ph)PGDVSDSATSDSTK_
ARHGAP21	Phosphorylation	S1503	-0.718	-0.864	_ESTPSEEPS(ph)PPHNSK_
ARHGAP21	Phosphorylation	S1671	0.412		_RNSEGS(ph)ELSCTEGSLTSSLDSR_
ARHGAP21	Phosphorylation	S1674	1.136		_RNSEGSELS(ph)CTEGSLTSSLDSR_
ARHGAP21	Phosphorylation	S1860	0.454	0.616	_LRTS(ph)TSDLSR_
ARL1	Ubiquitylation	K157	-0.303	-0.196	_WQIFK(gl)TSATK_
ATL2	Phosphorylation	S24	0.308		_RRTS(ph)DPSAAVNHVSSTTSLGENYEDDDLVNSDEVM(ox)K_
ATL2	Phosphorylation	S27	0.452	0.451	_RRTSDPS(ph)AAVNHVSSTTSLGENYEDDDLVNSDEVM(ox)K_
ATL2	Ubiquitylation	K270		-0.836	_LQVK(gl)QNQHEELQNVR_
ATL2	Ubiquitylation	K346		0.278	_EISGSK(gl)VTCR_
ATL2	Ubiquitylation	K427	-0.252	0.249	_EVAIK(gl)QFR_
BLZF1	Ubiquitylation	K77	0.563	1.076	_AMEVK(gl)AVR_
CDC42	Ubiquitylation	K173	-1.839		_DDPSTIEK(gl)LAK_
CDC42	Ubiquitylation	K178	-0.801	-0.716	_NK(gl)QKPITPETAEK_
CDC42	Ubiquitylation	K180	-1.806		_QK(gl)PITPETAEK(gl)LAR_
CDC42	Ubiquitylation	K189	-1.082		_QKPITPETAEK(gl)LAR_
CDC42	Ubiquitylation	K198	0.550	1.159	_AVK(gl)YVECSALTQK_
CDC42	Ubiquitylation	K208	-0.937	0.038	_YVECSALTQK(gl)GLK_
CDC42	Ubiquitylation	K228	-2.488		_NVFDEAILAALEPPEPK(gl)K_
CDC42	Ubiquitylation	K229	-1.254		_NVFDEAILAALEPPEPKK(gl)_
CIT	Phosphorylation	S440	0.108	-0.025	_SESVVSGLDS(ph)PAK_
CIT	Phosphorylation	S1940		-2.591	_VASS(ph)PAPPEGPSHPR_
CIT	Phosphorylation	S1971		0.032	_DKS(ph)PGRPLER_
COG2	Ubiquitylation	K119		-0.811	_MSK(gl)QEDIR_
COG2	Ubiquitylation	K239		-0.373	_TYATIDK(gl)TR_
COG4	Phosphorylation	S6	-0.321	-0.137	_(ac)ADLDS(ph)PPKLSGVQQPSEGVGGGR_
COG4	Ubiquitylation	K176		0.222	_QGK(gl)EGSMIDANLK_
COG4	Ubiquitylation	K196		0.787	_LK(gl)AIVAEK_
COG4	Ubiquitylation	K208	-0.540	0.572	_FAIATK(gl)EGDLPQVER_
CTBP1	Ubiquitylation	K279	0.443		_GGLVDEK(gl)ALAQALK_
CTBP1	Ubiquitylation	K286	0.130	0.008	_ALAQALK(gl)EGR_
CTBP1	Phosphorylation	S492		-1.548	_YPPGIVGVAPGGLPAAM(ox)EGIIPGGIPVTHNLPTVAHPS(ph)QAPSPNQPTK_
CUL7	Ubiquitylation	K651	1.265	0.880	_DLINCHVYKK(gl)_
DYM	Ubiquitylation	K213		-0.934	_GPCLPYTSK(gl)LVK_
DYNC2H1	Ubiquitylation	K158		0.457	_SDTNLTK(gl)LK_
DYNC2H1	Ubiquitylation	K398		-0.876	_IIAPAEQK(gl)IAGK_
DYNC2H1	Ubiquitylation	K1248		-0.579	_AADLK(gl)DLNSR_
DYNC2H1	Ubiquitylation	K2608		-1.364	_LNSTDLK(gl)DVIKK_
DYNC2H1	Ubiquitylation	K2613		-1.117	_LNSTDLKDVIKK(gl)_
GOLGA5	Phosphorylation	S116	0.749	1.030	_KKS(ph)EPDDELLFDFLNSSQK_
GOLGA5	Ubiquitylation	K672	-0.736	-0.621	_NVPVLFNDTETNLAGMYGK(gl)VR_
GOLGB1	Phosphorylation	S6	0.891	0.541	_LS(ph)GLANVVLHELSGDDDTDQNMR_
GOLGB1	Phosphorylation	S542		2.256	_S(ph)SSAEESGQDVLENTFSQK_
GOLGB1	Ubiquitylation	K3007		0.500	_SSSSQTQPLK(gl)VQYQR_
GORASP1	Ubiquitylation	K169	-0.209	-0.035	_LMVYNSK(gl)SDSCR_
GORASP1	Phosphorylation	T216	-2.224	-1.869	_KPPGT(ph)PPPSALPLGAPPPDALPPGPTPEDSPS(ph)LETGSR_
HTT	Ubiquitylation	K260		-0.128	_AFIANLK(gl)_
HTT	Phosphorylation	S419	0.595	0.531	_SGS(ph)IVELIAGGGSSCS(ph)PVLSR_
HTT	Phosphorylation	S430	0.402	0.494	_SGSIVELIAGGGSS(ph)CSPVLSR_
HTT	Phosphorylation	S432	0.317	0.640	_SGSIVELIAGGGSSCS(ph)PVLSR_
HTT	Phosphorylation	S1195	-0.222	0.264	_EKEPGEQAS(ph)VPLSPK_
HTT	Phosphorylation	S1199	-0.456	-0.970	_GKEKEPGEQASVPLS(ph)PK_
HTT	Ubiquitylation	K1402	0.169	-0.538	_VSTQLK(gl)TNLTSVTK_
HTT	Phosphorylation	S1874	1.994	1.028	_LLSPQMS(ph)GEEEDSDLAAK_
LMAN1	Ubiquitylation	K96		0.601	_GSVWTK(gl)TK_
LMAN1	Ubiquitylation	K346	-0.443		_IHLEIK(gl)QLNR_
LMAN1	Ubiquitylation	K372	1.187	0.921	_YVSSLTEEISK(gl)R_
LMAN1	Ubiquitylation	K407		0.987	_QVNEMK(gl)NSMSETVR_
LMAN1	Ubiquitylation	K463		-0.810	_NMPSNEK(gl)PK_
LMAN1	Ubiquitylation	K465		-0.810	_NMPSNEK(gl)PK_
MYO18A	Phosphorylation	S140	0.894	0.905	_RFS(ph)FSQR_
MYO18A	Phosphorylation	S728	-0.154	-0.108	_STS(ph)FRQGPEESGLGDGTGPK_
MYO18A	Phosphorylation	S2020		-0.376	_SLAPDRS(ph)DDEHDPLDNTSRPR_
NPLOC4	Ubiquitylation	K31	0.434		_ETAATFLK(gl)K_
NPLOC4	Ubiquitylation	K32		0.249	_ETAATFLKK(gl)_
NPLOC4	Ubiquitylation	K52	1.485		_NK(gl)TGEITASSNK_
NPLOC4	Ubiquitylation	K68	0.309	1.149	_SLNLLK(gl)IK_
NPLOC4	Ubiquitylation	K70		0.626	_SLNLLKIK(gl)_
NPLOC4	Ubiquitylation	K191		-0.694	_FVALENISCKIK(gl)_
NPLOC4	Ubiquitylation	K243		0.275	_K(gl)TGNQHFGYLYGR_
NPLOC4	Ubiquitylation	K260		-0.573	_YTEHK(gl)DIPLGIR_
NPLOC4	Ubiquitylation	K544		-0.244	_TRNEELAQTWK(gl)R_
OBSL1	Phosphorylation	S10		1.129	_ASSGDQGS(ph)PPCFLR_
OBSL1	Ubiquitylation	K312	-0.172	-0.016	_VLYCQAK(gl)DR_
OBSL1	Ubiquitylation	K337	-0.584	-0.485	_NSAGQTLSAVQLHVK(gl)EPR_
OBSL1	Ubiquitylation	K427	-0.059		_TVANVTVK(gl)GPILK_
OPTN	Ubiquitylation	K448	-0.263	0.596	_QLQMDEMK(gl)QTIAK_
PLEKHM2	Phosphorylation	T439	-0.541	-0.417	_T(ph)GSPGDAPERPPLCDFSEGLSAPMDFYR_
PLEKHM2	Phosphorylation	S441	-0.541	-0.417	_T(ph)GSPGDAPERPPLCDFSEGLSAPMDFYR_
PLEKHM2	Ubiquitylation	K554	-1.456		_EGPVSEPEPGTQEVLCQLK(gl)R_
PRKD1	Phosphorylation	S207	0.941	1.048	_RLS(ph)NVSLTGVSTIR_
PRKD1	Phosphorylation	T219	-0.068	-0.162	_T(ph)SSAELSTSAPDEPLLQK_
PRKD1	Phosphorylation	S221	-0.662	-0.500	_TSS(ph)AELSTSAPDEPLLQK_
PRKD1	Phosphorylation	S225	-0.970	-0.919	_TSSAELSTS(ph)APDEPLLSPVSPGFEQK_
PRKD1	Phosphorylation	S236		-0.132	_TSSAELSTSAPDEPLLSPVS(ph)PGFEQK_
PRKD1	Phosphorylation	S251	0.474	0.751	_SNS(ph)QSYIGRPIHLDK_
PRKD1	Phosphorylation	S399	0.023	0.162	_TIS(ph)PSTSNNIPLMR_
PRKD1	Ubiquitylation	K730		1.177	_IIGEK(gl)SFR_
PRKD1	Phosphorylation	S744	-0.226	-0.287	_S(ph)VVGTPAYLAPEVLR_
SEC23IP	Ubiquitylation	K477		0.473	_VVSLK(gl)LLR_
SEC23IP	Ubiquitylation	K491	0.029	0.164	_SLDDGK(gl)VSR_
SEC23IP	Ubiquitylation	K723	0.169	0.567	_AVAATSTK(gl)GQEQSAQK_
SEC23IP	Ubiquitylation	K733	-1.878		_TK(gl)DMASLPSESNEPK_
SEC23IP	Ubiquitylation	K871	0.027		_MGSDLK(gl)QGFISSLK_
SEC23IP	Phosphorylation	S926	0.301	0.235	_VVES(ph)PDFSKDEDYLGK_
SEC23IP	Ubiquitylation	K931	-0.299		_VVESPDFSK(gl)DEDYLGK_
STX17	Ubiquitylation	K299	-0.023	-0.044	_LTSSCPDLPSQTDK(gl)K_
STX17	Ubiquitylation	K300	-0.023	-0.044	_LTSSCPDLPSQTDK(gl)K_
SYNE1	Phosphorylation	S8305	0.804	0.456	_ALPS(ph)EDEEGQDDKDFYLR_
SYNE1	Phosphorylation	T8360	0.406	0.397	_SKT(ph)PTGPELDTSYK_
TMED10	Ubiquitylation	K146		-0.149	_NYEEIAK(gl)VEK_
TMED9	Ubiquitylation	K71		0.655	_TQLYDK(gl)QR_
TMED9	Ubiquitylation	K180	0.163	1.074	_QLVEQVEQIQK(gl)EQNYQR_
USP6NL	Ubiquitylation	K10	0.472	-0.742	_(ac)MNSDQDVALK(gl)LAQER_
USP6NL	Phosphorylation	S396	-0.213	-0.319	_SVGRPS(ph)PLASGR_
USP6NL	Phosphorylation	S714	-0.115	0.036	_IEVLPVDTGAGGYSGNS(ph)GSPK_
USP6NL	Phosphorylation	S716	0.006	-0.090	_IEVLPVDTGAGGYSGNSGS(ph)PK_
VCPIP1	Phosphorylation	S747	-0.399	-0.410	_TVS(ph)PSTIR_
VCPIP1	Phosphorylation	S756	-1.060		_DGPS(ph)SAPATPTK_
VCPIP1	Phosphorylation	S757	-0.916	-0.655	_DGPSS(ph)APATPTK_