RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
NEDD1	2	-0.540	1.020
IFT80	1	-1.610	2.740
EZR	1	-0.240	-0.210		2.501	-2.209	0.246	0.091
CBY1	1	-1.700	3.270
BBS2	1	-0.810	0.820
CEP290	1	1.020	-0.690
CEP290	1	2.010	-1.090
MKS1	0
OFD1	0	1.920	-1.210				-0.269
PTPN23	0	0.800	-0.570
IFT57	0	-0.190	0.050
ALMS1	0	0.100	-0.080
WDR35	0	0.320	-0.150
CEP250	0	-0.780	0.750	-0.268
RAB3IP	0	-1.200	1.610
DYNC2LI1	0
BBS4	0	0.310	0.160
CETN3	0	0.230	-0.460
WDR19	0	-0.150	-0.220
BBS5	0	-0.760	-0.060
BBS5	0	-0.090	0.120
BBS5	0	-0.030	0.000
IFT122	0	0.590	-0.240
IFT122	0	1.590	-0.690
TMEM67	0	-0.480	0.280
TTC8	0	0.800	-1.070
RAB8A	0	-0.300	0.550				0.568	0.278
RAB8A	0	-0.300	0.550		1.641	-1.484	0.560	0.491
C2CD3	0	-0.390	-0.010
TCTN2	0	0.150	-0.580
TCTN1	0	1.100	-1.080

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ALMS1	Ubiquitylation	K4131	-6.338		_RIYEQLPEVQKK(gl)R_
BBS2	Ubiquitylation	K231		-0.482	_FGYALSNGTVGVYDK(gl)TSR_
BBS2	Ubiquitylation	K360		-1.721	_NYEENAK(gl)AELASPLNEADGHR_
BBS2	Phosphorylation	S365		2.366	_AELAS(ph)PLNEADGHR_
BBS2	Ubiquitylation	K659		-0.582	_DLLNGYK(gl)IR_
BBS4	Ubiquitylation	K28		-0.615	_TQFPVSTESQK(gl)PR_
BBS4	Ubiquitylation	K302		-2.331	_YVAAISCLK(gl)R_
BBS4	Ubiquitylation	K408		-2.242	_NALAQYQEMEK(gl)K_
BBS4	Ubiquitylation	K409		-2.242	_NALAQYQEMEK(gl)K_
BBS5	Ubiquitylation	K150		-1.116	_SALIQNK(gl)QLR_
C2CD3	Ubiquitylation	K86	-0.837		_DALQTEPK(gl)AVR_
C2CD3	Phosphorylation	S2111	-1.046	-1.043	_EGPS(ph)CPSPGPFCR_
C2CD3	Phosphorylation	S2114		-1.200	_EGPSCPS(ph)PGPFCR_
CBY1	Phosphorylation	S9	-0.597	-0.810	_PFFGNTFS(ph)PK_
CBY1	Phosphorylation	S20	0.383	0.563	_SAS(ph)LSNLHSLDR_
CEP250	Ubiquitylation	K1254	1.110		_LHQDLWK(gl)TQQTR_
CEP250	Ubiquitylation	K1574	0.155	1.217	_MECQQK(gl)LIK_
CEP250	Phosphorylation	S2229	0.282	0.334	_LHS(ph)PGATSTAELGSR_
CEP250	Phosphorylation	S2322	-0.190		_AAQAGS(ph)LEISK_
CEP290	Ubiquitylation	K593	-1.125		_K(gl)LDLLSLK_
CEP290	Ubiquitylation	K735	-1.199		_KEAINYSQQLAK(gl)ANLK_
CEP290	Ubiquitylation	K830	0.626		_EYLSEK(gl)ETWK_
CEP290	Ubiquitylation	K1178	-1.408		_DK(gl)EVESLR_
CEP290	Ubiquitylation	K1336	-0.794		_GLEELISTLK(gl)DTK_
CEP290	Ubiquitylation	K1552	-0.135		_LNQK(gl)EEVLKK_
CEP290	Ubiquitylation	K1682	0.578		_LQLQENHEDEVKK(gl)_
CETN3	Ubiquitylation	K62		0.026	_ALGFDVK(gl)K_
CETN3	Ubiquitylation	K63	-1.435	0.026	_ALGFDVKK(gl)_
CETN3	Ubiquitylation	K117	-0.835		_LFDDDDSGK(gl)ISLR_
DYNC2LI1	Ubiquitylation	K151		-1.054	_TNAK(gl)AVSEMR_
EZR	Ubiquitylation	K3	-0.313	-0.251	_PK(gl)PINVR_
EZR	Ubiquitylation	K79	0.172	-0.032	_ENPLQFK(gl)FR_
EZR	Ubiquitylation	K139	1.519	0.361	_FGDYNK(gl)EVHK_
EZR	Ubiquitylation	K162	1.580	0.660	_VMDQHK(gl)LTR_
EZR	Ubiquitylation	K253	-0.069		_NISFNDK(gl)K_
EZR	Ubiquitylation	K263	-0.786		_K(gl)APDFVFYAPR_
EZR	Ubiquitylation	K344	0.598	0.235	_EK(gl)EELMLR_
EZR	Ubiquitylation	K357	-0.003		_LQDYEEK(gl)TK_
EZR	Ubiquitylation	K359	0.051		_LQDYEEK(gl)TK_
EZR	Ubiquitylation	K450	0.393	0.174	_AK(gl)EAQDDLVK_
IFT122	Ubiquitylation	K804		-0.101	_MLITK(gl)QADWAR_
IFT122	Ubiquitylation	K1084	-0.071		_FQK(gl)SIELGTLTIR_
IFT57	Ubiquitylation	K360		-0.753	_AAQAQLSEAK(gl)ER_
IFT80	Ubiquitylation	K665		-0.641	_DLCITSVK(gl)R_
MKS1	Ubiquitylation	K178	-0.574	0.716	_GMEGGILK(gl)SR_
MKS1	Ubiquitylation	K469		-0.213	_IPGSFK(gl)GER_
MKS1	Ubiquitylation	K507	0.137	-0.095	_AFMESSSLQK(gl)R_
NEDD1	Phosphorylation	S418	2.570	2.332	_SSLGDMFS(ph)PIRDDAVVNK_
NEDD1	Phosphorylation	T522		0.255	_LVTSGAESGNLNT(ph)SPSSNQTR_
NEDD1	Phosphorylation	S523	0.186	0.129	_LVTSGAESGNLNTS(ph)PSSNQTR_
OFD1	Ubiquitylation	K218		0.010	_AEMCQK(gl)LK_
OFD1	Ubiquitylation	K256		-0.642	_ACQAK(gl)SEALVLR_
OFD1	Ubiquitylation	K533		-0.930	_ASVK(gl)SLTTQVADLK_
OFD1	Phosphorylation	S669	-0.349	-0.888	_S(ph)PPSLHLLEAFK_
OFD1	Phosphorylation	S735	0.482	-0.458	_RLS(ph)STPLPK_
OFD1	Phosphorylation	S762	-0.735	-0.990	_SHIAS(ph)PSPCPDR_
OFD1	Phosphorylation	S774	-0.145	-0.111	_MPLPS(ph)PTESR_
OFD1	Phosphorylation	S788		-0.298	_HSLSIPPVS(ph)SPPEQK_
OFD1	Phosphorylation	S789		-0.909	_HSLSIPPVSS(ph)PPEQK_
OFD1	Phosphorylation	S899		-0.092	_RQS(ph)NLQEVLER_
PTPN23	Ubiquitylation	K215	-0.317		_ISAQVVDYYK(gl)EACR_
PTPN23	Ubiquitylation	K288	-0.754	-0.795	_LAK(gl)GQPDTVQDALR_
PTPN23	Ubiquitylation	K500	-0.529		_EWAK(gl)YMEVHEK_
PTPN23	Phosphorylation	S1123	-1.317	-0.838	_GAAAADLLSSS(ph)PESQHGGTQSPGGGQPLLQPTK_
RAB3IP	Phosphorylation	S266	0.229	0.337	_TLVLSSSPTS(ph)PTQEPLPGGK_
RAB3IP	Phosphorylation	T268		0.061	_TLVLSSSPTSPT(ph)QEPLPGGK_
RAB3IP	Phosphorylation	S288	0.935	0.734	_NKS(ph)TSSAM(ox)SGSHQDLSVIQPIVK_
RAB8A	Ubiquitylation	K3	0.848		_(ac)AK(gl)TYDYLFK_
RAB8A	Ubiquitylation	K138	1.091		_ERGEK(gl)LALDYGIK_
RAB8A	Ubiquitylation	K163		0.199	_LLLGNK(gl)CDMEAK_
RAB8A	Ubiquitylation	K174	-0.188		_VQK(gl)EQADKLAR_
RAB8A	Phosphorylation	S185	0.117	0.264	_KLEGNSPQGS(ph)NQGVK_
RAB8A	Ubiquitylation	K190	-0.573		_LEGNSPQGSNQGVK(gl)ITPDQQK_
RAB8A	Ubiquitylation	K213	-0.059	0.420	_DILLK(gl)SGGR_
TCTN1	Ubiquitylation	K459		1.010	_LTGALPCQLVAQKVK(gl)_
TCTN2	Ubiquitylation	K337		0.250	_DGIINAK(gl)IK_
TMEM67	Ubiquitylation	K650	1.063	0.642	_VLK(gl)AVEGEGGVR_
TMEM67	Ubiquitylation	K986		0.268	_NLASK(gl)TLVDQR_
TTC8	Ubiquitylation	K184		-0.765	_LNLTK(gl)YSQKPK_
TTC8	Ubiquitylation	K259		0.324	_VQIGK(gl)CYYR_
WDR19	Ubiquitylation	K475		0.103	_LFPAVDDK(gl)CR_
WDR35	Ubiquitylation	K51		0.094	_LETQTDDAK(gl)LR_
WDR35	Ubiquitylation	K590		0.254	_VTDSTGQQVVGELLK(gl)LER_
WDR35	Ubiquitylation	K680		-0.600	_ALIEK(gl)VGIK_
WDR35	Ubiquitylation	K1086		0.785	_AFGTCSK(gl)AFIK_