RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
GATAD2B	3	-0.530	-0.230	-1.157			-0.789	-0.828
GATAD2B	3	-0.530	-0.230		-0.147	0.600
HNRNPC	2						-1.880
HNRNPC	2
HNRNPC	2			0.393	-0.963	-0.202
HNRNPC	2			0.328
SMARCB1	1	0.850	-0.060	0.041	-0.003	0.699	0.354	-0.731
SMARCB1	1	0.850	-0.060		0.738	1.594
SMARCD2	1	1.610	-1.190	0.105	0.359	0.644	0.148	0.282
HDAC1	1	-1.980	4.450
HDAC1	1	-1.980	4.450	-0.122	0.307	0.969	0.094	0.191
ARID1A	1	0.360	-0.350	0.683	0.272	0.870	-0.131	0.043
RBBP4	1	2.110	-1.240	0.533	-0.610	0.648
HDAC2	1	-2.390	4.970
HDAC2	1	-2.390	4.970	0.187	-0.007	0.825
MBD3	0	0.730	-1.260	0.210	0.189	0.976	0.079	0.453
SMARCE1	0	-0.270	0.280	0.341
SMARCE1	0	-0.270	0.280		0.251	0.796	0.284	0.349
CHD4	0	0.740	-0.710	-2.910			-0.998	-0.326
CHD4	0	0.740	-0.710	0.187	0.222	0.572	0.098	0.155
SMARCA4	0	-0.810	1.520	0.629	-0.158	0.141	0.337	0.333
DPF2	0	-0.460	1.170	0.036	-0.321	0.192	0.300	0.128
MBD2	0	-1.430	2.250		0.312	1.033
ACTL6A	0	1.180	-1.200	-0.232	-0.204	0.672	-0.015	0.126
SMARCC2	0	-0.770	0.630
SMARCC2	0	-0.770	0.630	0.151	0.139	0.622	0.709	0.505
MTA2	0	-1.360	1.910	0.507	0.478	0.899	0.023	0.072
SMARCC1	0	0.140	0.090	0.553	0.112	0.584	0.137	0.136

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ACTL6A	Phosphorylation	S233		0.000	_EGS(ph)PANWK_
ACTL6A	Ubiquitylation	K238		-0.635	_EGSPANWK(gl)R_
ACTL6A	Ubiquitylation	K242		-0.676	_EK(gl)LPQVTR_
ACTL6A	Ubiquitylation	K371		-0.788	_ELSQK(gl)TPPSMR_
ACTL6A	Ubiquitylation	K379	0.076	-0.470	_LK(gl)LIANNTTVER_
ARID1A	Phosphorylation	S363	0.211	0.022	_SHHAPM(ox)S(ph)PGSSGGGGQPLAR_
ARID1A	Phosphorylation	S367	-0.142		_SHHAPMSPGSS(ph)GGGGQPLAR_
ARID1A	Phosphorylation	S381		0.335	_TPQPS(ph)SPMDQMGK_
ARID1A	Phosphorylation	S382	1.506	0.780	_TPQPSS(ph)PMDQMGK_
ARID1A	Phosphorylation	S696	-0.934	-0.737	_GPS(ph)PSPVGSPASVAQSR_
ARID1A	Phosphorylation	S702	0.267	-0.175	_GPS(ph)PSPVGS(ph)PASVAQSR_
ARID1A	Phosphorylation	S705	0.157		_GPS(ph)PSPVGSPAS(ph)VAQSR_
ARID1A	Phosphorylation	S772	-0.112	-0.485	_NPQMPQYSSPQPGSALS(ph)PR_
ARID1A	Phosphorylation	S1182	1.584	1.063	_S(ph)NSVGIQDAFNDGSDSTFQK_
ARID1A	Phosphorylation	S1184	1.732	1.114	_SNS(ph)VGIQDAFNDGSDSTFQK_
ARID1A	Phosphorylation	S1754	0.131	-0.654	_VS(ph)SPAPM(ox)EGGEEEEELLGPK_
ARID1A	Phosphorylation	S1755	-0.409	-0.587	_VSS(ph)PAPMEGGEEEEELLGPK_
ARID1A	Phosphorylation	S1944		-0.489	_FPFGIS(ph)PAQSHR_
CHD4	Phosphorylation	S402		0.539	_EGIQWEAKEDNS(ph)EGEEILEEVGGDLEEEDDHHMEFCR_
CHD4	Phosphorylation	S489	-1.030	-2.127	_WGQPPS(ph)PTPVPRPPDADPNTPSPK_
CHD4	Phosphorylation	T491		-2.659	_WGQPPS(ph)PTPVPRPPDADPNTPSPK_
CHD4	Ubiquitylation	K884		0.702	_NNQSK(gl)FFR_
CHD4	Ubiquitylation	K959	-0.609		_LK(gl)ADVFK_
CHD4	Phosphorylation	S1509	-0.565	-0.704	_MSQPGS(ph)PSPK_
CHD4	Phosphorylation	T1514		-1.082	_T(ph)PTPSTPGDTQPNTPAPVPPAEDGIK_
CHD4	Phosphorylation	T1519		-1.446	_TPTPST(ph)PGDTQPNTPAPVPPAEDGIK_
CHD4	Phosphorylation	T1527	-2.218	-2.475	_TPTPS(ph)TPGDTQPNT(ph)PAPVPPAEDGIK_
CHD4	Phosphorylation	S1544	1.206	1.130	_IEENS(ph)LKEEESIEGEK_
CHD4	Ubiquitylation	K1778		0.999	_GNFLEIK(gl)NK_
CHD4	Ubiquitylation	K1780		0.999	_GNFLEIK(gl)NK_
CHD4	Ubiquitylation	K1844	-0.796		_ESMAGNK(gl)PANAVLHK_
CHD4	Ubiquitylation	K1865	-0.216		_QLEELLSDMK(gl)ADVTR_
DPF2	Phosphorylation	S142	0.048	-0.592	_VDDDS(ph)LGEFPVTNSR_
DPF2	Phosphorylation	T176	-1.391	-0.682	_ILEPDDFLDDLDDEDYEEDT(ph)PKR_
GATAD2B	Ubiquitylation	K30	2.874		_SLDPADERDDVLAK(gl)R_
GATAD2B	Phosphorylation	T120	-1.102	1.781	_GRLT(ph)PS(ph)PDIIVLSDNEASSPR_
GATAD2B	Phosphorylation	S122	-0.663	-0.537	_GRLT(ph)PS(ph)PDIIVLSDNEASSPR_
GATAD2B	Phosphorylation	S129	-1.356	-0.779	_LTPSPDIIVLS(ph)DNEASSPR_
GATAD2B	Phosphorylation	S134		-0.320	_LTPS(ph)PDIIVLSDNEAS(ph)SPR_
GATAD2B	Phosphorylation	S135	-0.258	0.162	_GRLTPS(ph)PDIIVLSDNEASS(ph)PR_
GATAD2B	Phosphorylation	S333	-0.139		_VS(ph)SPLPSPSAMTDAANSQAAAK_
GATAD2B	Phosphorylation	S334	-0.045	-1.702	_VSS(ph)PLPSPSAMTDAANSQAAAK_
GATAD2B	Phosphorylation	S338	1.596	0.866	_VSSPLPS(ph)PSAMTDAANSQAAAK_
GATAD2B	Ubiquitylation	K467	0.219		_NAFVK(gl)ALQQEQEIEQR_
GATAD2B	Phosphorylation	S486	1.427	0.618	_LQQQAALS(ph)PTTAPAVSSVSK_
HDAC1	Ubiquitylation	K50	0.036		_K(gl)MEIYRPHK_
HDAC1	Ubiquitylation	K66		-0.593	_ANAEEMTK(gl)YHSDDYIK_
HDAC1	Ubiquitylation	K74	0.620	-1.473	_YHSDDYIK(gl)FLR_
HDAC1	Ubiquitylation	K89	0.749	-0.241	_SIRPDNMSEYSK(gl)QMQR_
HDAC1	Phosphorylation	S393	-1.133	-1.144	_M(ox)LPHAPGVQM(ox)QAIPEDAIPEES(ph)GDEDEDDPDKR_
HDAC1	Phosphorylation	S409	1.326	1.144	_ISICS(ph)SDKR_
HDAC1	Phosphorylation	S410	1.326	1.144	_ISICS(ph)SDKR_
HDAC1	Ubiquitylation	K412	0.642	-0.744	_ISICSSDK(gl)R_
HDAC2	Ubiquitylation	K50	0.036		_K(gl)MEIYRPHK_
HDAC2	Ubiquitylation	K67		-0.467	_ATAEEMTK(gl)YHSDEYIK_
HDAC2	Ubiquitylation	K89	0.749	-0.241	_SIRPDNMSEYSK(gl)QMQR_
HDAC2	Ubiquitylation	K284	0.749		_GHAK(gl)CVEVVK_
HDAC2	Phosphorylation	S394	-0.865	-0.997	_M(ox)LPHAPGVQM(ox)QAIPEDAVHEDS(ph)GDEDGEDPDKR_
HDAC2	Phosphorylation	S422	0.482	0.781	_IACDEEFS(ph)DSEDEGEGGR_
HNRNPC	Ubiquitylation	K8	0.732	1.200	_(ac)ASNVTNK(gl)TDPR_
HNRNPC	Ubiquitylation	K29	0.547	0.408	_VFIGNLNTLVVK(gl)K_
HNRNPC	Ubiquitylation	K30	1.835	0.526	_K(gl)SDVEAIFSK_
HNRNPC	Ubiquitylation	K39	1.567	1.654	_KSDVEAIFSK(gl)YGK_
HNRNPC	Ubiquitylation	K42	1.682	0.918	_YGK(gl)IVGCSVHK_
HNRNPC	Ubiquitylation	K89	2.190		_MIAGQVLDINLAAEPK(gl)VNR_
HNRNPC	Phosphorylation	S115	0.163	-0.604	_SAAEMYGSVTEHPSPS(ph)PLLSSSFDLDYDFQR_
HNRNPC	Ubiquitylation	K187	2.283		_SGK(gl)LKGDDLQAIK_
HNRNPC	Ubiquitylation	K189	2.864	2.924	_LK(gl)GDDLQAIKK_
HNRNPC	Ubiquitylation	K198	1.950	1.082	_K(gl)ELTQIK_
HNRNPC	Ubiquitylation	K204	1.166	1.091	_ELTQIK(gl)QK_
HNRNPC	Ubiquitylation	K206	1.658		_QK(gl)VDSLLENLEK_
HNRNPC	Phosphorylation	S219	1.346	1.180	_NDKS(ph)EEEQSSSSVKK_
HNRNPC	Ubiquitylation	K223	2.087	1.452	_EQSK(gl)QAVEMK_
HNRNPC	Phosphorylation	S227	-0.159	-0.194	_SEEEQSSSS(ph)VKKDETNVK_
HNRNPC	Ubiquitylation	K229	0.976		_QAVEMK(gl)NDKSEEEQSSSSVK_
HNRNPC	Ubiquitylation	K232	1.213		_QAVEMK(gl)NDKSEEEQSSSSVK_
HNRNPC	Phosphorylation	S239		0.162	_M(ox)ES(ph)EGGADDSAEEGDLLDDDDNEDR_
HNRNPC	Phosphorylation	S240	0.895	0.581	_M(ox)ES(ph)EGGADDSAEEGDLLDDDDNEDR_
HNRNPC	Ubiquitylation	K243	-0.143		_NDKSEEEQSSSSVK(gl)KDETNVK_
HNRNPC	Phosphorylation	S246	0.479	0.284	_M(ox)ESEGGADDS(ph)AEEGDLLDDDDNEDR_
HNRNPC	Phosphorylation	S247	0.551	0.433	_MESEGGADDS(ph)AEEGDLLDDDDNEDRGDDQVK_
HNRNPC	Phosphorylation	S253	0.514		_M(ox)ES(ph)EGGADDS(ph)AEEGGLLDDDDNEDRGDDQLELIK_
HNRNPC	Phosphorylation	S260	0.514		_M(ox)ES(ph)EGGADDS(ph)AEEGGLLDDDDNEDRGDDQLELIK_
HNRNPC	Phosphorylation	S285	0.568	0.403	_EAEEGEDDRDS(ph)ANGEDDS_
MBD2	Ubiquitylation	K185	0.919		_SDVYYFSPSGK(gl)K_
MBD3	Ubiquitylation	K42	-0.711		_DVFYYSPSGKK(gl)_
MBD3	Phosphorylation	S56	0.663	0.474	_YLGGS(ph)MDLSTFDFR_
MBD3	Phosphorylation	S85	0.574	0.485	_VRYDS(ph)SNQVK_
MBD3	Ubiquitylation	K92	-0.542		_GK(gl)PDLNTALPVR_
MBD3	Ubiquitylation	K124	0.195		_ITNHPSNKVK(gl)_
MBD3	Ubiquitylation	K129	-0.498		_SDPQK(gl)AVDQPR_
MTA2	Ubiquitylation	K32	0.007		_RIEELNK(gl)TANGNVEAK_
MTA2	Phosphorylation	S54	0.469	0.399	_DISSS(ph)LNSLADSNAR_
MTA2	Ubiquitylation	K71	0.012		_EFEEESK(gl)QPGVSEQQR_
MTA2	Ubiquitylation	K152	0.194	0.043	_VGCK(gl)YQAEIPDRLVEGESDNR_
MTA2	Ubiquitylation	K173	-0.127		_LVEGESDNRNQQK(gl)MEMK_
MTA2	Ubiquitylation	K177	-0.885		_MEMK(gl)VWDPDNPLTDR_
MTA2	Ubiquitylation	K320	0.565		_TTDRYIQQK(gl)R_
MTA2	Ubiquitylation	K405	-0.377		_YGGLK(gl)TPTQLEGATR_
MTA2	Phosphorylation	S435		-0.289	_GHLSRPEAQSLS(ph)PYTTSANR_
MTA2	Ubiquitylation	K508	-0.512		_TPLK(gl)IHPLVR_
MTA2	Ubiquitylation	K531	-0.796		_DLVAQAPLK(gl)PK_
MTA2	Phosphorylation	T534		-0.765	_DLVAQAPLKPKT(ph)PR_
MTA2	Ubiquitylation	K559	0.516		_GLGGIMVK(gl)R_
MTA2	Ubiquitylation	K611	-1.680		_LNPADAPNPVVFVATK(gl)DTR_
RBBP4	Ubiquitylation	K4	0.699	0.574	_(ac)ADK(gl)EAAFDDAVEER_
RBBP4	Ubiquitylation	K160	-1.765		_HPSK(gl)PDPSGECNPDLR_
SMARCA4	Ubiquitylation	K357	-0.934		_ITPIQK(gl)PR_
SMARCA4	Ubiquitylation	K405	0.109	1.148	_ATIELK(gl)ALR_
SMARCA4	Ubiquitylation	K437	-0.317		_DTALETALNAK(gl)AYKR_
SMARCA4	Ubiquitylation	K455	0.225		_ITEK(gl)LEK_
SMARCA4	Ubiquitylation	K496		0.923	_SVTGK(gl)IQK_
SMARCA4	Phosphorylation	S677	-0.880	-0.324	_KAENAEGQTPAIGPDGEPLDETSQMS(ph)DLPVK_
SMARCA4	Ubiquitylation	K1283	0.125		_ILAAAK(gl)YK_
SMARCA4	Phosphorylation	S1413	-0.265	0.515	_EVDYSDS(ph)LTEK_
SMARCA4	Phosphorylation	S1486	-0.713	-0.935	_LS(ph)PNPPNLTK_
SMARCB1	Ubiquitylation	K13	0.411	-0.949	_TFGQK(gl)PVK_
SMARCB1	Ubiquitylation	K208		-0.170	_LDMEIDGQK(gl)LR_
SMARCC1	Phosphorylation	S310	-0.047	0.123	_NEEPVRS(ph)PERR_
SMARCC1	Phosphorylation	S328	-0.755	-0.358	_KHS(ph)PS(ph)PPPPTPTESR_
SMARCC1	Phosphorylation	S330	-0.755	-1.491	_KHS(ph)PS(ph)PPPPTPTESR_
SMARCC1	Ubiquitylation	K588	-0.831		_SPQVPAAQQMLNFPEK(gl)NK_
SMARCC1	Ubiquitylation	K590	-0.737		_NK(gl)EKPVDLQNFGLR_
SMARCC1	Ubiquitylation	K592	-0.509		_EK(gl)PVDLQNFGLR_
SMARCC1	Ubiquitylation	K608	-0.342	0.588	_TDIYSK(gl)K_
SMARCC1	Ubiquitylation	K609	-0.053	0.520	_TDIYSKK(gl)_
SMARCC1	Ubiquitylation	K716	0.001		_VASAAAK(gl)AALEEFSR_
SMARCC1	Ubiquitylation	K882	0.402		_AK(gl)HLAAVEER_
SMARCC2	Ubiquitylation	K161	-0.199		_LKDIIK(gl)R_
SMARCC2	Phosphorylation	S283	0.602	0.869	_TLTDEVNS(ph)PDSDRR_
SMARCC2	Phosphorylation	S302	-0.755	-0.668	_RS(ph)PSPSPTPEAK_
SMARCC2	Phosphorylation	S347	-0.627	-0.862	_DMDEPS(ph)PVPNVEEVTLPK_
SMARCC2	Ubiquitylation	K455	-0.775		_ALPEFFNGKNK(gl)_
SMARCC2	Ubiquitylation	K694	0.389		_VASAAAK(gl)SALEEFSK_
SMARCC2	Ubiquitylation	K872	-0.712		_DIGEGNLSTAAAAALAAAAVK(gl)AK_
SMARCC2	Ubiquitylation	K874	0.402		_AK(gl)HLAAVEER_
SMARCC2	Ubiquitylation	K902	0.641	0.460	_KLEIK(gl)LR_
SMARCD2	Ubiquitylation	K168		-1.058	_K(gl)LDQTIAR_
SMARCD2	Phosphorylation	S199	-0.485		_IYIS(ph)NTFSPSKAEGDSAGTAGTPGGTPAGDK_
SMARCD2	Phosphorylation	T217	1.626	0.539	_AEGDSAGTAGT(ph)PGGTPAGDK_
SMARCD2	Ubiquitylation	K237	-0.079	-1.110	_VEGK(gl)LLDDPSK_
SMARCD2	Ubiquitylation	K244	0.036		_LLDDPSK(gl)QK_
SMARCD2	Ubiquitylation	K246	0.036		_LLDDPSK(gl)QK_
SMARCD2	Ubiquitylation	K451		-0.755	_IHETIESINQLK(gl)TQR_
SMARCE1	Ubiquitylation	K92	0.706		_ASNPDLK(gl)LWEIGK_
SMARCE1	Ubiquitylation	K271	-0.418	-0.010	_FLESTDSFNNELK(gl)R_