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Query: SMARCD2

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
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[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
SMARCD2 1 2.625 1.610 -1.190 0.105 0.359 0.644 0.148 0.282

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
SMARCD2 Phosphorylation T217 1.626 0.539 _AEGDSAGTAGT(ph)PGGTPAGDK_
SMARCD2 Ubiquitylation K451 -0.755 _IHETIESINQLK(gl)TQR_
SMARCD2 Ubiquitylation K168 -1.058 _K(gl)LDQTIAR_
SMARCD2 Ubiquitylation K237 -0.079 -1.110 _VEGK(gl)LLDDPSK_
SMARCD2 Phosphorylation S199 -0.485 _IYIS(ph)NTFSPSKAEGDSAGTAGTPGGTPAGDK_
SMARCD2 Ubiquitylation K244 0.036 _LLDDPSK(gl)QK_
SMARCD2 Ubiquitylation K246 0.036 _LLDDPSK(gl)QK_

Background Information for SMARCD2:


Pubmed-SMARCD2 »
Uniprot-SMARCD2 »
Biogrid-SMARCD2 »
ProteomicsDB-SMARCD2 »

Tumorportal-SMARCD2 »
COSMIC-SMARCD2 »
GenomeRNAi-SMARCD2 »
Genecards-SMARCD2


Protein-protein Interactions for SMARCD2
Show screen data for Category Name and Description Link to cat description Data Source
Category members IP bait BCL7C Cat. description Hein, Mann, Cell 2015
Category members IP bait KPNA1 Cat. description Hein, Mann, Cell 2015
Category members IP bait NUP153 Cat. description Hein, Mann, Cell 2015
Category members IP bait PTPN1 Cat. description Hein, Mann, Cell 2015
Category members IP bait SAMHD1 Cat. description Hein, Mann, Cell 2015
Category members IP bait SMARCC1 Cat. description Hein, Mann, Cell 2015
Category members IP bait BCL7A Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait BCL7C Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait DPF2 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait DPF3 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait NUP50 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait QPRT Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait RELB Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait SMARCC2 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait SMARCD1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait SMARCE1 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait SS18 Cat. description BioPlex, Huttlin, Gygi, Cell 2015
Category members IP bait TEX13A Cat. description BioPlex, Huttlin, Gygi, Cell 2015


Protein Domains in SMARCD2
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members SWIB_MDM2_domain IPR003121 0.6
Category members SWIB_domain IPR019835 0.6


Protein complexes (CORUM database) featuring SMARCD2
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members Corum 778 LARC complex (LCR-associated remodeling complex) Database 5.04
Category members Corum 714 BRM-SIN3A complex Database 4.02
Category members Corum 713 BRG1-SIN3A complex Database 3.51
Category members Corum 1252 EBAFa complex Database 2.5
Category members Corum 806 BRM-SIN3A-HDAC complex Database 2.48
Category members Corum 555 BAF complex Database 2.03
Category members Corum 564 BAF complex Database 2.03
Category members Corum 1239 EBAFb complex Database 1.57
Category members Corum 238 SWI-SNF chromatin remodeling-related-BRCA1 complex Database 1.57
Category members Corum 554 PBAF complex (Polybromo- and BAF containing complex) Database 1.57
Category members Corum 565 PBAF complex (Polybromo- and BAF containing complex) Database 1.57
Category members Corum 566 BAF complex Database 1.57
Category members Corum 710 Brg1-associated complex I Database 1.57
Category members Corum 711 Brm-associated complex Database 1.57
Category members Corum 808 BRM-associated complex Database 1.57
Category members Corum 3065 RNA polymerase II complex, chromatin structure modifying Database 1.26
Category members Corum 3064 RNA polymerase II complex, chromatin structure modifying Database 0.64


Categories featuring SMARCD2
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005515 protein binding Database INF
Category members GO Category GO:0006338 chromatin remodeling Database 4.95
Category members GO Category GO:0003713 transcription coactivator activity Database 3.68
Category members DDR Literature pubmedid:19647519 Paulsen et al., 2009 siRNA screen for g-H2A.x phosphorylation 3.6
Category members GO Category GO:0006337 nucleosome disassembly Database 3
Category members GO Category GO:0016514 SWI/SNF complex Database 2.12
Category members GO Category GO:0006351 transcription, DNA-templated Database 1.07
Category members GO Category GO:0006357 regulation of transcription from RNA polymerase II promoter Database 0.19


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