RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
GSK3B	2	1.020	-0.870				-1.128	1.091
PML	1	-0.420	0.350		-0.244	0.322
KAT5	1	3.690	-1.200
RUVBL1	1	-2.280	5.280	0.726	0.246	0.680	0.325	0.277
RUVBL2	1	-2.210	5.080	0.796	0.479	0.807	0.364	0.491
TRRAP	1	0.160	-0.850	-0.022			-0.416	0.113
PPP2R5A	0	-0.210	0.930
AK6	0	1.570	-1.340	0.364
TAF9B	0	0.230	-0.620	0.364
HBP1	0	-1.130	1.580
PPP2CA	0	0.160	-0.540	0.194			0.044	0.215
PPP2CA	0	0.160	-0.540		0.650	1.189
ZBTB17	0	0.670	-0.540
SUPT7L	0	-1.260	1.420
TAF12	0	-0.620	-0.070	0.042
MAX	0	-0.780	0.530		-0.276	0.290
MAX	0	-0.780	0.530
PIN1	0	-0.060	-0.440		-1.204	-0.594
ACTL6A	0	1.180	-1.200	-0.232	-0.204	0.672	-0.015	0.126
MYC	0	0.170	0.550	-2.443	-0.949	-0.454		-1.290
SKP2	0	0.030	0.690
SKP2	0	0.030	0.690
CDKN2A	0	-0.080	-0.260	-0.556		-1.080	-3.270	-1.110
PAK2	0	-0.760	1.040

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ACTL6A	Phosphorylation	S233		0.000	_EGS(ph)PANWK_
ACTL6A	Ubiquitylation	K238		-0.635	_EGSPANWK(gl)R_
ACTL6A	Ubiquitylation	K242		-0.676	_EK(gl)LPQVTR_
ACTL6A	Ubiquitylation	K371		-0.788	_ELSQK(gl)TPPSMR_
ACTL6A	Ubiquitylation	K379	0.076	-0.470	_LK(gl)LIANNTTVER_
AK6	Ubiquitylation	K5		-0.683	_(ac)MESGK(gl)TASPK_
AK6	Ubiquitylation	K10		-0.576	_TASPK(gl)SMPK_
GSK3B	Phosphorylation	S9	-0.483	0.010	_TTS(ph)FAESCKPVQQPSAFGSMK_
GSK3B	Ubiquitylation	K85		-0.204	_LCDSGELVAIK(gl)K_
GSK3B	Ubiquitylation	K86		-0.204	_LCDSGELVAIK(gl)K_
GSK3B	Phosphorylation	S215	0.296	0.477	_GEPNVS(ph)YICSR_
GSK3B	Phosphorylation	Y216	0.356	0.376	_GEPNVSY(ph)ICSR_
GSK3B	Phosphorylation	T390	2.800	2.527	_IQAAAST(ph)PTNATAASDANTGDR_
HBP1	Ubiquitylation	K426		-1.246	_NCGSPGSSQLSSNSLYAK(gl)AVK_
KAT5	Ubiquitylation	K230		-0.079	_MK(gl)NIECIELGR_
KAT5	Ubiquitylation	K274		-0.149	_SLK(gl)CLQR_
MAX	Phosphorylation	S2	0.341	-0.060	_(ac)S(ph)DNDDIEVES(ph)DEEQPR_
MAX	Phosphorylation	S2	0.510	0.568	_(ac)S(ph)DNDDIEVESDADKR_
MAX	Phosphorylation	S11	0.341	-0.060	_(ac)S(ph)DNDDIEVES(ph)DEEQPR_
MAX	Phosphorylation	S11	-0.408	0.069	_(ac)S(ph)DNDDIEVES(ph)DADKR_
MAX	Ubiquitylation	K57	-0.903	0.246	_DSVPSLQGEK(gl)ASR_
MYC	Phosphorylation	S20	-1.444	-1.145	_PLNVS(ph)FTNR_
MYC	Phosphorylation	T72	-1.699	-1.813	_FELLPT(ph)PPLS(ph)PSRR_
MYC	Phosphorylation	S76	-1.777	-1.435	_FELLPTPPLS(ph)PSR_
MYC	Phosphorylation	S81		0.459	_S(ph)GLCSPSYVAVTPFSLR_
MYC	Phosphorylation	S85	0.199	0.073	_SGLCS(ph)PSYVAVTPFSLR_
MYC	Ubiquitylation	K162	-2.475	-1.259	_LVSEK(gl)LASYQAAR_
MYC	Phosphorylation	S295		-0.903	_SESGS(ph)PSAGGHSKPPHSPLVLK_
MYC	Phosphorylation	S307		-1.486	_SES(ph)GSPSAGGHSKPPHS(ph)PLVLK_
MYC	Ubiquitylation	K340		-2.449	_VK(gl)LDSVR_
MYC	Ubiquitylation	K403		-3.432	_DQIPELENNEK(gl)APK_
PAK2	Phosphorylation	S2	-1.228	-0.902	_(ac)S(ph)DNGELEDKPPAPPVR_
PAK2	Ubiquitylation	K136	1.213		_FYDSNTVK(gl)QK_
PAK2	Phosphorylation	S141	-0.294	-0.321	_YLS(ph)FTPPEK_
PAK2	Ubiquitylation	K370	-0.565		_DIK(gl)SDNVLLGMEGSVK_
PIN1	Ubiquitylation	K13	-0.216	-0.516	_(ac)ADEEKLPPGWEK(gl)R_
PIN1	Ubiquitylation	K117	0.117		_SGEEDFESLASQFSDCSSAK(gl)AR_
PML	Ubiquitylation	K394	0.515	0.360	_LQDLSSCITQGK(gl)DAAVSKK_
PML	Phosphorylation	S403		3.141	_KAS(ph)PEAASTPRDPIDVDLPEEAER_
PML	Ubiquitylation	K476	-0.403	-0.735	_GPSYGEDVSNTTTAQK(gl)R_
PML	Phosphorylation	S504	-0.198	-0.109	_S(ph)SPEQPRPSTSK_
PML	Phosphorylation	S505	-0.198	-0.109	_S(ph)SPEQPRPSTSK_
PML	Phosphorylation	S518	-1.632	-1.605	_AVS(ph)PPHLDGPPS(ph)PR_
PML	Phosphorylation	S527	-1.392	-1.605	_AVS(ph)PPHLDGPPS(ph)PR_
PML	Phosphorylation	S530	0.466	0.093	_S(ph)PVIGSEVFLPNSNHVASGAGEAEER_
PML	Ubiquitylation	K623		-0.784	_IDNETQK(gl)ISQLAAVNR_
PPP2CA	Ubiquitylation	K4	-0.788	-0.378	_(ac)MDDK(gl)AFTK_
PPP2CA	Ubiquitylation	K4	-0.450	-0.016	_(ac)M(ox)DEK(gl)VFTK_
PPP2CA	Ubiquitylation	K8	-0.522		_VFTK(gl)ELDQWIEQLNECK_
PPP2CA	Ubiquitylation	K21	-1.370		_ELDQWVEQLNECK(gl)QLNENQVR_
PPP2CA	Ubiquitylation	K21	-1.106		_ELDQWIEQLNECK(gl)QLSESQVK_
PPP2CA	Ubiquitylation	K29	0.211	0.122	_QLSESQVK(gl)SLCEK_
PPP2CA	Ubiquitylation	K36	-0.455	0.187	_AK(gl)EILTK_
PPP2CA	Ubiquitylation	K36	-0.455	0.187	_AK(gl)EILTK_
PPP2CA	Ubiquitylation	K41	-0.049	0.003	_EILTK(gl)ESNVQEVR_
PPP2CA	Ubiquitylation	K74	-0.316	-0.316	_IGGK(gl)SPDTNYLFMGDYVDR_
PPP2R5A	Phosphorylation	S5		-0.414	_(ac)SSSS(ph)PPAGAASAAISASEK_
RUVBL1	Ubiquitylation	K7	0.148	0.466	_MKIEEVK(gl)STTK_
RUVBL1	Ubiquitylation	K171	0.030	-0.502	_QLK(gl)LDPSIFESLQK_
RUVBL1	Ubiquitylation	K201	0.095		_VEAGDVIYIEANSGAVK(gl)R_
RUVBL2	Ubiquitylation	K9	-0.203	-0.294	_(ac)ATVTATTK(gl)VPEIRDVTR_
RUVBL2	Ubiquitylation	K160	0.331		_VGK(gl)LTLK_
RUVBL2	Ubiquitylation	K186	-0.554		_DK(gl)VQAGDVITIDK_
RUVBL2	Ubiquitylation	K234	-0.191	-0.742	_FVQCPDGELQK(gl)R_
RUVBL2	Ubiquitylation	K365	-0.355	-0.601	_LLIVSTTPYSEK(gl)DTK_
RUVBL2	Ubiquitylation	K368		-0.345	_LLIVSTTPYSEKDTK(gl)QILR_
RUVBL2	Ubiquitylation	K417		-1.196	_K(gl)GTEVQVDDIK(gl)R_
RUVBL2	Ubiquitylation	K427	0.479	0.403	_K(gl)GTEVQVDDIK(gl)R_
SKP2	Phosphorylation	S8	-1.062		_SNLGHPES(ph)PPRK_
SKP2	Phosphorylation	S64	-1.144	-1.189	_EEPDSENIPQELLSNLGHPES(ph)PPR_
SKP2	Phosphorylation	S75	0.512	0.657	_SKGS(ph)DKDFVIVR_
SKP2	Ubiquitylation	K228		-0.475	_LSDPIVNTLAK(gl)NSNLVR_
SKP2	Ubiquitylation	K420		-1.178	_LTLQK(gl)PSCL_
SUPT7L	Phosphorylation	S108	-1.774	-2.007	_TEESEPLPSCPGS(ph)PPLPDDLLPLDCKNPNAPFQIR_
SUPT7L	Phosphorylation	S323	0.036	-0.394	_FPSNLEVEAS(ph)PQASSAEVNASPLWNLAHVK_
TAF12	Phosphorylation	S51	0.073	-0.035	_LS(ph)PENNQVLTK_
TAF9B	Ubiquitylation	K5		-0.683	_(ac)MESGK(gl)TASPK_
TAF9B	Ubiquitylation	K10		-0.576	_TASPK(gl)SMPK_
ZBTB17	Phosphorylation	T119	-0.130	-0.375	_SLAEPAT(ph)SPGGNAEALATEGGDK_
ZBTB17	Phosphorylation	S120	-0.091	-0.316	_SLAEPATS(ph)PGGNAEALATEGGDK_