RNAi screen result	RNAPII IP (MG132)	CSB IP	CSB IP (MG132)	Chrom.	Chrom. (MG132)	Ubi /Phospo	Ubi /Phospho (MG132)
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Gene name	MGoogle Score	RNAi high	RNAi low	RNAPII-IP (MG132)	CSB-IP	CSB-IP (MG132)	Chrom.	Chrom. (MG132)
ATP6V1H	2	-1.810	2.860				0.325
ATP6V1H	2	-1.810	2.860	-0.409
COX7A2L	2	2.010	-0.800				0.968	1.562
ATP5B	1	2.320	-1.410	0.568	0.424	-1.201
COX7A2	1	-0.430	0.430				0.943	2.309
NDUFA8	1	0.870	-0.830	-0.305			-0.739	-0.548
PPA2	1	-0.030	-0.180	1.652	-0.677	-2.027	0.607	1.273
ATP6V1B2	1	-1.700	3.610				-0.526	0.143
ATP6V0D1	1	-0.960	0.640
ATP6V0D1	1	-0.960	0.640	-0.252			-0.493	2.836
UQCRQ	1	-2.130	4.340				0.883	0.707
NDUFS5	1	2.110	-0.840				0.239	0.358
PPA1	1	-1.290	2.930
UQCRC1	0	-0.810	1.500	1.170
COX15	0	0.370	-0.560				0.378	0.563
NDUFS1	0	-0.550	0.770	0.388	-0.330	-1.498	0.368	0.186
ATP6V0A1	0	-0.580	0.460				-0.439	0.009
NDUFB4	0	-0.070	-0.540	-0.250			-0.592	-0.035
SDHA	0	1.350	-1.030	0.223			0.787	0.745
SDHA	0	1.350	-1.030	0.602	0.333	-0.951	0.718	0.496
ATP12A	0	0.590	-0.960	-0.520
ATP5D	0	-0.180	0.130				0.149	0.224
NDUFB7	0	0.910	-0.950				-0.061	0.245
ATP6V1D	0	1.770	-0.910				0.833	0.523
ATP4A	0	-0.340	0.120	0.377	0.914	-1.883	0.083	0.031
NDUFS8	0	0.480	0.100	0.556			0.300	0.534
COX6A1	0	-0.090	0.070					0.157
ATP6V1A	0	-0.790	0.280	0.981			0.151	0.014
NDUFS7	0	1.220	-0.670	-0.853			-0.390	-1.647
NDUFS7	0	1.220	-0.670		0.036	-0.063
ATP6V1B1	0	1.440	-1.080				-0.526	0.143
ATP5F1	0						0.721	0.419
SDHB	0	-0.720	0.810	-0.156	-0.332	-1.201	0.467	0.434
NDUFB3	0	0.030	0.250				0.049	0.067
NDUFA1	0	-0.970	0.750
COX6B1	0	0.040	0.480				0.423
NDUFA5	0	1.050	-0.770	0.227	0.106	-0.698	0.331	-0.137
NDUFA10	0	-0.010	-0.040	-0.338			0.377	0.103
NDUFA10	0	-0.010	-0.040		-0.348
ATP6V1E1	0	-0.180	0.310				-0.346	-2.246
COX4I1	0	-0.180	0.210	-0.141			0.051	-0.199
NDUFB5	0	1.580	-0.160	-1.253			0.429	1.250
ATP6V1G1	0	0.090	-0.400
ATP6V1G1	0	0.090	-0.400
ATP6V1G2	0	-0.040	0.160
ATP6V1G2	0	-0.040	0.160
ATP6V1G2-D	0
ATP6V1G2-D	0
NDUFA9	0	0.390	-0.190	0.726			-0.609	0.138
UQCRC2	0	-1.200	1.760	1.190			0.712	0.578
NDUFB10	0	-0.540	0.240	0.655			-0.439	0.217
SDHC	0	0.700	-0.920				0.734
NDUFS6	0	-1.180	1.230				0.083	0.081
NDUFB9	0	1.320	-1.130				-0.198	-0.162
NDUFC2	0	0.170	-0.110				-1.212	-0.980
ATP5A1	0	-0.100	0.190	0.149	0.419	-0.743
ATP6V1C1	0
UQCRB	0	0.760	-0.590				0.932	0.013
NDUFS2	0	0.150	0.060	0.489	-0.323	-1.479
NDUFV3	0	0.760	-0.640
NDUFS4	0	0.190	-0.590				-0.148	-0.106
COX6C	0	-1.210	1.800				-0.502	0.239
NDUFB6	0	-1.020	1.120					-0.183
ATP5C1	0	0.380	-0.440	0.381	-0.025	-0.749	0.379	0.339
NDUFV1	0	-0.620	0.680				-0.032	0.387
ATP5H	0	0.790	-0.660				-0.180	-0.220
ATP5I	0	0.040	1.110				-1.015
UQCRFS1	0	0.580	-0.380
UQCRFS1	0	0.580	-0.380		0.455	-1.390
UQCRH	0
NDUFA11	0	0.800	-0.540				0.209	-0.530
NDUFV2	0	1.600	-1.130				0.165	0.361
COX5A	0	0.630	-0.700				-0.118	0.366
CYC1	0	0.160	-0.180				0.985	0.521
NDUFB1	0	0.580	-0.030				-0.368
UQCR10	0	-0.360	0.450				0.768	0.390
ATP6V0A2	0	1.190	-0.740				0.137	-0.457
ATP4B	0	0.870	-0.660
NDUFA4	0	1.070	-0.860	0.219			0.286
NDUFS3	0	0.810	-0.670	0.563	-0.004	-0.643	0.049	-0.093
ATP5J2	0	-0.450	0.140	0.429	-0.169	-0.273	-0.094	-0.322
ATP5J2	0	-0.450	0.140				-0.905
ATP5O	0	0.140	-0.360	-0.208			0.202	0.472
ATP6V1E2	0	-0.020	-0.010

Gene name	PTM type	PTM site	UV	UV (MG132)	Sequence
ATP4A	Ubiquitylation	K9	0.245	0.226	_DK(gl)YEPAAVSEQGDKK_
ATP4A	Phosphorylation	S16	-0.121	0.100	_DKYEPAAVS(ph)EQGDKK_
ATP4A	Ubiquitylation	K22	0.726		_DKYEPAAVSEQGDKK(gl)_
ATP4A	Ubiquitylation	K24	0.135		_YEPAAVSEQGDKKGK(gl)_
ATP4A	Ubiquitylation	K36	1.089	0.875	_DMDELK(gl)K_
ATP4A	Ubiquitylation	K37	1.220		_DMDELK(gl)KEVSMDDHK_
ATP4A	Ubiquitylation	K45	-0.107		_EVSMDDHK(gl)LSLDELHR_
ATP4A	Ubiquitylation	K54	-1.233	0.206	_K(gl)YGTDLSR_
ATP4A	Ubiquitylation	K156	-1.024	0.552	_SSK(gl)IMESFK_
ATP4A	Ubiquitylation	K162	-0.474	0.225	_IMESFK(gl)NMVPQQALVIR_
ATP4A	Ubiquitylation	K212	-0.693	-0.230	_IISANGCK(gl)VDNSSLTGESEPQTR_
ATP4A	Ubiquitylation	K377	-1.676	-0.190	_NLEAVETLGSTSTICSDK(gl)TGTLTQNR_
ATP4A	Ubiquitylation	K444	-0.592	-0.292	_AVFQANQENLPILK(gl)R_
ATP4A	Ubiquitylation	K468	-0.291	0.462	_CIELCCGSVK(gl)EMR_
ATP4A	Ubiquitylation	K476		1.195	_YAK(gl)IVEIPFNSTNK_
ATP4A	Ubiquitylation	K508		-1.151	_NPNTSEPQHLLVMK(gl)GAPER_
ATP4A	Ubiquitylation	K605	0.393	0.204	_AAVPDAVGK(gl)CR_
ATP4A	Ubiquitylation	K625	-2.291	-0.674	_VIMVTGDHPITAK(gl)AIAK_
ATP4A	Ubiquitylation	K629		0.204	_AIAK(gl)GVGIISEGNETVEDIAAR_
ATP4A	Ubiquitylation	K661	-1.060	-0.037	_DAK(gl)ACVVHGSDLK_
ATP4A	Ubiquitylation	K698	-1.846	-0.336	_TSPQQK(gl)LIIVEGCQR_
ATP4A	Ubiquitylation	K726	-1.405	-0.328	_QGAIVAVTGDGVNDSPALK(gl)K_
ATP4A	Ubiquitylation	K727	-1.257	-0.518	_QGAIVAVTGDGVNDSPALKK(gl)_
ATP4A	Ubiquitylation	K773		0.165	_LIFDNLK(gl)K_
ATP4A	Ubiquitylation	K840	-1.467	-0.964	_NPK(gl)TDKLVNER_
ATP4A	Ubiquitylation	K843		0.143	_TDK(gl)LVNER_
ATP4A	Ubiquitylation	K950		0.029	_NSVFQQGMK(gl)NK_
ATP4A	Ubiquitylation	K952	-1.917	0.295	_NSVFQQGMKNK(gl)_
ATP4B	Ubiquitylation	K8	0.834	-0.818	_AALQEKK(gl)_
ATP5A1	Ubiquitylation	K161		-1.608	_VVDALGNAIDGK(gl)GPIGSK_
ATP5A1	Ubiquitylation	K175		-0.184	_VGLK(gl)APGIIPR_
ATP5A1	Ubiquitylation	K261		-0.997	_STVAQLVK(gl)R_
ATP5B	Ubiquitylation	K55		-1.344	_DYAAQTSPSPK(gl)AGAATGR_
ATP5B	Ubiquitylation	K426		-0.601	_GVQK(gl)ILQDYK_
ATP5B	Phosphorylation	S465		-1.223	_FLS(ph)QPFQVAEVFTGHMGK_
ATP5C1	Ubiquitylation	K29		-0.071	_NMATLK(gl)DITR_
ATP5I	Ubiquitylation	K34	-2.285		_YNYLK(gl)PR_
ATP5O	Ubiquitylation	K84	-1.113	1.074	_VAASVLNPYVK(gl)R_
ATP6V0A1	Ubiquitylation	K119		0.578	_EINTNQEALK(gl)R_
ATP6V0A1	Ubiquitylation	K235		0.326	_K(gl)ICEGFR_
ATP6V0A1	Ubiquitylation	K255	0.143		_K(gl)EMASGVNTR_
ATP6V0A1	Ubiquitylation	K366		-0.441	_MQTNQTPPTYNK(gl)TNK_
ATP6V0A1	Ubiquitylation	K369	-1.113	-0.322	_MQTNQTPPTYNKTNK(gl)_
ATP6V0A2	Ubiquitylation	K136	0.287		_VTK(gl)TFVKR_
ATP6V0A2	Ubiquitylation	K290	0.039	-0.079	_QVLCK(gl)AAESVYSR_
ATP6V0A2	Phosphorylation	S695	0.705	0.859	_KDS(ph)EEEVSLLGSQDIEEGNHQVEDGCR_
ATP6V0D1	Ubiquitylation	K384	0.065	-0.172	_AK(gl)IDNYIPIF_
ATP6V1A	Ubiquitylation	K5	-0.075	-0.921	_(ac)MDFSK(gl)LPK_
ATP6V1A	Ubiquitylation	K132		0.567	_DIK(gl)WDFTPCK_
ATP6V1A	Ubiquitylation	K139	-1.426	-0.412	_WDFTPCK(gl)NLR_
ATP6V1A	Ubiquitylation	K393		-0.894	_VK(gl)CLGNPER_
ATP6V1A	Ubiquitylation	K516		-0.571	_LIK(gl)DDFLQQNGYTPYDR_
ATP6V1C1	Ubiquitylation	K28	-0.393		_LHAATSK(gl)NNNLAVTSK_
ATP6V1E1	Ubiquitylation	K10	0.069	-0.101	_(ac)ALSDADVQK(gl)QIK_
ATP6V1E1	Ubiquitylation	K145	-2.187	-0.725	_KQDFPLVK(gl)AAVQK_
ATP6V1E1	Ubiquitylation	K150		-0.749	_AAVQK(gl)AIPMYK_
ATP6V1E1	Ubiquitylation	K156		-1.382	_AIPMYK(gl)IATK_
ATP6V1E2	Ubiquitylation	K10	0.468		_ALSDVDVKK(gl)_
ATP6V1G1	Phosphorylation	S3		1.440	_(ac)AS(ph)QSQGIQQLLQAEK_
ATP6V1G1	Ubiquitylation	K16	0.071		_(ac)ASQSQGIQQLLQAEK(gl)R_
ATP6V1G2	Phosphorylation	S3		1.440	_(ac)AS(ph)QSQGIQQLLQAEK_
ATP6V1G2	Ubiquitylation	K16	0.071		_(ac)ASQSQGIQQLLQAEK(gl)R_
ATP6V1G2-DDX39B	Phosphorylation	S3		1.440	_(ac)AS(ph)QSQGIQQLLQAEK_
ATP6V1G2-DDX39B	Ubiquitylation	K16	0.071		_(ac)ASQSQGIQQLLQAEK(gl)R_
ATP6V1H	Ubiquitylation	K176	1.541	0.958	_TQLSSQK(gl)LR_
COX6B1	Ubiquitylation	K13	-1.330	0.150	_NYK(gl)TAPFDSR_
COX6B1	Ubiquitylation	K47	-0.072		_AMTAK(gl)GGDISVCEWYQR_
CYC1	Ubiquitylation	K50		-1.489	_TPQAVALSSK(gl)SGLSR_
NDUFA1	Ubiquitylation	K64	-2.721	-0.183	_YYVSK(gl)GLENID_
NDUFA8	Ubiquitylation	K65	0.281	1.896	_LVNK(gl)CALDFFR_
NDUFA8	Ubiquitylation	K106	-0.122		_KQQAK(gl)FDECVLDK_
NDUFB10	Ubiquitylation	K121		-0.555	_EGQNYQQNCIK(gl)EVEQFTQVAK_
NDUFB10	Ubiquitylation	K131		-0.444	_EVEQFTQVAK(gl)AYQDR_
NDUFB4	Ubiquitylation	K5		-1.281	_(ac)SFPK(gl)YKPSSLR_
NDUFB4	Ubiquitylation	K120		-0.825	_LIQEGK(gl)LDR_
NDUFB6	Ubiquitylation	K9	-2.576	-0.600	_TGYTPDEK(gl)LR_
NDUFB6	Ubiquitylation	K54	-1.501	-0.723	_FLENK(gl)SPWR_
NDUFB7	Ubiquitylation	K81	-1.497	-0.471	_DSFPNFLACK(gl)QER_
NDUFS1	Ubiquitylation	K298		-1.134	_FAYDGLK(gl)R_
NDUFS5	Ubiquitylation	K8		0.336	_PFLDIQK(gl)R_
NDUFS5	Ubiquitylation	K88	-0.635	1.381	_DKLIK(gl)EGK_
NDUFS8	Ubiquitylation	K88		-1.865	_EPATINYPFEK(gl)GPLSPR_
NDUFV3	Phosphorylation	S448		-0.878	_M(ox)PQPS(ph)SGRESPRH_
NDUFV3	Phosphorylation	S449	-0.292		_M(ox)PQPSS(ph)GRESPRH_
NDUFV3	Phosphorylation	S453	-0.918	-0.698	_M(ox)PQPSSGRES(ph)PRH_
PPA1	Ubiquitylation	K25		0.720	_VFLKNEK(gl)_
PPA1	Ubiquitylation	K70	-0.316		_DPLNPIK(gl)QDVKK_
PPA1	Ubiquitylation	K253	-0.140		_GISCMNTTLSESPFK(gl)CDPDAAR_
PPA2	Phosphorylation	S317	0.152	0.108	_SLVESVSSS(ph)PNKESNEEEQVWHFLGK_
SDHA	Ubiquitylation	K341		-1.790	_YAPVAK(gl)DLASR_
UQCRC2	Ubiquitylation	K250		-0.825	_GGLGLSGAK(gl)ANYR_
UQCRC2	Ubiquitylation	K377		-1.458	_TIAQGNLSNTDVQAAKNK(gl)_
UQCRFS1	Ubiquitylation	K110		-0.915	_RLEVLDSTK(gl)SSR_
UQCRFS1	Ubiquitylation	K172		-0.698	_LSDIPEGK(gl)NMAFK_
UQCRH	Ubiquitylation	K42	-0.522	1.440	_EQCEQLEK(gl)CVK_