bioLOGIC Data » bioLOGIC CategoryView » bioLOGIC VennView » Experimental Details »

bioLOGIC Data

bioLOGIC Data


Exact search


Query: PPA1

RNAi screen result RNAPII IP (PI) CSB IP CSB IP (PI) Chrom. Chrom. (PI) Phosphorylation Ubiquitylation
W
[Click on the plots to view the data selection in the respective scatterplot]

Protein Results:

 Results for post-translational modifications: see below | Red/green: hit at lower/upper end of the respective screen
Gene name Point score Z-score sums RNAi high RNAi low RNAPII-IP (PI) CSB-IP CSB-IP (PI) Chrom. Chrom. (PI)
PPA1 1 3.510 -1.290 2.930

PTM Sites:

 Back to Protein Results | Red/green: hit at lower/upper end of the respective screen
Gene name PTM type PTM site UV UV (PI) Sequence
PPA1 Ubiquitylation K25 0.720 _VFLKNEK(gl)_
PPA1 Ubiquitylation K70 -0.316 _DPLNPIK(gl)QDVKK_
PPA1 Ubiquitylation K253 -0.140 _GISCMNTTLSESPFK(gl)CDPDAAR_

Background Information for PPA1:


Pubmed-PPA1 »
Uniprot-PPA1 »
Biogrid-PPA1 »
ProteomicsDB-PPA1 »

Tumorportal-PPA1 »
COSMIC-PPA1 »
GenomeRNAi-PPA1 »
Genecards-PPA1


Protein-protein Interactions for PPA1
Show screen data for Category Name and Description Link to cat description Data Source


Protein Domains in PPA1
Domain name Domain Description TC-NER relevance -log10(p-value)
Category members Pyrophosphatase IPR008162 0


Protein complexes (CORUM database) featuring PPA1
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)


Categories featuring PPA1
Category Type Category ID Category Name Data Source TC-NER relevance -log10(p-value)
Category members GO Category GO:0005829 cytosol Database INF
Category members GO Category GO:0010467 gene expression Database INF
Category members GO Category GO:0005737 cytoplasm Database 12.81
Category members Pathway Pathway_201 REACTOME_CYTOSOLIC_TRNA_AMINOACYLATION 0 3.57
Category members Pathway Pathway_202 REACTOME_TRNA_AMINOACYLATION 0 1.34
Category members GO Category GO:0006418 tRNA aminoacylation for protein translation Database 0.91
Category members GO Category GO:0006796 phosphate-containing compound metabolic process Database 0.07
Category members Pathway Pathway_30 KEGG_OXIDATIVE_PHOSPHORYLATION 0 0
Category members GO Category GO:0000287 magnesium ion binding Database 0
Category members GO Category GO:0004427 inorganic diphosphatase activity Database 0
Category members GO Category GO:0016462 pyrophosphatase activity Database 0
Category members GO Category GO:0071344 diphosphate metabolic process Database 0


.

© Copyright Svejstrup Laboratory 2015